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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_024670 | AC104593 | 79737326 | 3 | chr15 | NT_024670 | AC016180 | 79781969 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024670 | AC104593 | 79737326 | 3 |   |   | AC025841 | 79454602 | | 27768 | 0 | 0 | 27768 |
S/G/Y/R/B/O |
NT_024670 | AC016180 | 79781969 | 3 | chr15 | NT_024670 | AC107978 | 79966704 | 3 | 32973 | 0 | 0 | 32973 |
S/G/Y/R/B/O |
NT_024670 | AC016180 | 79781969 | 3 |   |   | AC025841 | 79454602 | | 82162 | 0 | 0 | 82162 |
S/G/Y/R/B/O |
NT_024670 | AC016180 | 79781969 | 3 |   |   | AC108711 | 79966704 | | 23922 | 0 | 8495 | 32417 |
S/G/Y/R/B/O |
NT_024670 | AC107978 | 79966704 | 3 | chr15 | NT_024670 | AC025842 | 80003042 | 3 | 15967 | 0 | 0 | 15967 |
S/G/Y/R/B/O |
NT_024670 | AC107978 | 79966704 | 3 |   |   | AC108711 | 80003042 | | 23936 | 0 | 44944 | 68880 |
S/G/Y/R/B/O |
NT_024670 | AC025842 | 80003042 | 3 | chr15 | NT_024670 | AC069197 | 80139967 | 3 | 29574 | 0 | 0 | 29574 |
S/G/Y/R/B/O |
NT_024670 | AC025842 | 80003042 | 3 |   |   | AC108711 | 79966704 | | 122323 | 0 | 0 | 122323 |
S/G/Y/R/B/O |
NT_024670 | AC069197 | 80139967 | 3 | chr15 | NT_024670 | AC022817 | 80227078 | 3 | 45846 | 0 | 0 | 45846 |
S/G/Y/R/B/O |
NT_024670 | AC069197 | 80139967 | 3 |   |   | AC011050 | 79966704 | | 77608 | 0 | 5224 | 82832 |
S/G/Y/R/B/O |
NT_024670 | AC022817 | 80227078 | 3 | chr15 | NT_024670 | AC012229 | 80354116 | 3 | 6295 | 0 | 0 | 6295 |
S/G/Y/R/B/O |
NT_024670 | AC022817 | 80227078 | 3 |   |   | AC011050 | 80003042 | | 59353 | 0 | 0 | 59353 |
S/G/Y/R/B/O |
NT_024670 | AC022817 | 80227078 | 3 |   |   | AC090176 | 80139967 | | 53849 | 5530 | 1296 | 60675 |
S/G/Y/R/B/O |
NT_024670 | AC012229 | 80354116 | 3 | chr15 | NT_024670 | AC018950 | 80467544 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024670 | AC012229 | 80354116 | 3 |   |   | AC021790 | 80139967 | | 29818 | 4262 | 42192 | 76272 |
S/G/Y/R/B/O |
NT_024670 | AC012229 | 80354116 | 3 |   |   | AC090176 | 80227078 | | 43679 | 2300 | 0 | 45979 |
S/G/Y/R/B/O |
NT_024670 | AC018950 | 80467544 | 3 | chr15 | NT_024670 | AC016987 | 80617260 | 3 | 0 | 0 | 2270 | 2270 |
S/G/Y/R/B/O |
NT_024670 | AC016987 | 80617260 | 3 | chr15 | NT_024670 | AC078905 | 80719810 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024670 | AC016987 | 80617260 | 3 |   |   | AC011629 | 80617260 | | 37307 | 0 | 25978 | 63285 |
S/G/Y/R/B/O |
NT_024670 | AC016987 | 80617260 | 3 |   |   | AC104589 | 80467544 | | 56304 | 0 | 0 | 56304 |
S/G/Y/R/B/O |
NT_024670 | AC078905 | 80719810 | 3 | chr15 | NT_024670 | AC105204 | 80888912 | 3 | 31739 | 0 | 0 | 31739 |
S/G/Y/R/B/O |
NT_024670 | AC078905 | 80719810 | 3 |   |   | AC011629 | 80467544 | | 45499 | 1943 | 74898 | 122340 |
S/G/Y/R/B/O |
NT_024670 | AC078905 | 80719810 | 3 |   |   | AC104589 | 80467544 | | 152472 | 0 | 0 | 152472 |
S/G/Y/R/B/O |
NT_024670 | AC105204 | 80888912 | 3 | chr15 | NT_024670 | AC079208 | 81067627 | 3 | 100196 | 0 | 0 | 100196 |
S/G/Y/R/B/O |
NT_024670 | AC105204 | 80888912 | 3 |   |   | AC011629 | 80888912 | | 15482 | 0 | 0 | 15482 |
S/G/Y/R/B/O |
NT_024670 | AC105204 | 80888912 | 3 |   |   | AC026297 | 80888912 | | 60171 | 14439 | 46132 | 120742 |
S/G/Y/R/B/O |
NT_024670 | AC105204 | 80888912 | 3 |   |   | AC087488 | 81067627 | | 159450 | 1686 | 1001 | 162137 |
S/G/Y/R/B/O |
NT_024670 | AC105204 | 80888912 | 3 |   |   | AC104589 | 81067627 | | 15444 | 0 | 0 | 15444 |
S/G/Y/R/B/O |
NT_024670 | AC105204 | 80888912 | 3 |   |   | AC124794 | 81067627 | | 77735 | 0 | 0 | 77735 |
S/G/Y/R/B/O |
NT_024670 | AC105204 | 80888912 | 3 |   |   | AC124795 | 81067627 | | 39266 | 2090 | 1327 | 42683 |
S/G/Y/R/B/O |
NT_024670 | AC079208 | 81067627 | 3 | chr15 | NT_024670 | AC018787 | 81135584 | 3 | 54835 | 0 | 0 | 54835 |
S/G/Y/R/B/O |
NT_024670 | AC079208 | 81067627 | 3 | chr15 | NT_024670 | AC090257 | 81171443 | 3 | 48825 | 0 | 0 | 48825 |
S/G/Y/R/B/O |
NT_024670 | AC079208 | 81067627 | 3 |   |   | AC015558 | 81067627 | | 52473 | 0 | 0 | 52473 |
S/G/Y/R/B/O |
NT_024670 | AC079208 | 81067627 | 3 |   |   | AC026297 | 81135584 | | 30493 | 2894 | 9715 | 43102 |
S/G/Y/R/B/O |
NT_024670 | AC079208 | 81067627 | 3 |   |   | AC124794 | 80888912 | | 140746 | 4196 | 0 | 144942 |
S/G/Y/R/B/O |
NT_024670 | AC079208 | 81067627 | 3 |   |   | AC124795 | 80888912 | | 107304 | 2090 | 1339 | 110733 |
S/G/Y/R/B/O |
NT_024670 | AC018787 | 81135584 | 3 | chr15 | NT_024670 | AC090257 | 81171443 | 3 | 84703 | 0 | 0 | 84703 |
S/G/Y/R/B/O |
NT_024670 | AC018787 | 81135584 | 3 |   |   | AC015558 | 80888912 | | 88354 | 0 | 0 | 88354 |
S/G/Y/R/B/O |
NT_024670 | AC018787 | 81135584 | 3 |   |   | AC124794 | 81171443 | | 50305 | 4196 | 0 | 54501 |
S/G/Y/R/B/O |
NT_024670 | AC018787 | 81135584 | 3 |   |   | AC124795 | 81171443 | | 54835 | 0 | 0 | 54835 |
S/G/Y/R/B/O |
NT_024670 | AC090257 | 81171443 | 3 | chr15 | NT_024670 | AC068206 | 81246039 | 3 | 63823 | 0 | 0 | 63823 |
S/G/Y/R/B/O |
NT_024670 | AC090257 | 81171443 | 3 | chr15 | NT_024670 | AC020687 | 81290265 | 3 | 25945 | 0 | 0 | 25945 |
S/G/Y/R/B/O |
NT_024670 | AC090257 | 81171443 | 3 | chr15 | NT_024670 | AC079208 | 81067627 | 3 | 48825 | 0 | 0 | 48825 |
S/G/Y/R/B/O |
NT_024670 | AC090257 | 81171443 | 3 |   |   | AC015558 | 81171443 | | 159295 | 0 | 0 | 159295 |
S/G/Y/R/B/O |
NT_024670 | AC090257 | 81171443 | 3 |   |   | AC124794 | 81067627 | | 44296 | 4196 | 0 | 48492 |
S/G/Y/R/B/O |
NT_024670 | AC090257 | 81171443 | 3 |   |   | AC124795 | 81067627 | | 48825 | 0 | 0 | 48825 |
S/G/Y/R/B/O |
NT_024670 | AC068206 | 81246039 | 3 | chr15 | NT_024670 | AC020687 | 81290265 | 3 | 70228 | 0 | 0 | 70228 |
S/G/Y/R/B/O |
NT_024670 | AC068206 | 81246039 | 3 |   |   | AC015558 | 81067627 | | 107886 | 0 | 0 | 107886 |
S/G/Y/R/B/O |
NT_024670 | AC020687 | 81290265 | 3 | chr15 | NT_024670 | AC107876 | 81389607 | 3 | 2585 | 0 | 0 | 2585 |
S/G/Y/R/B/O |
NT_024670 | AC020687 | 81290265 | 3 | chr15 | NT_024670 | AC090257 | 81171443 | 3 | 25945 | 0 | 0 | 25945 |
S/G/Y/R/B/O |
NT_024670 | AC020687 | 81290265 | 3 |   |   | AC015558 | 81171443 | | 72045 | 0 | 0 | 72045 |
S/G/Y/R/B/O |
NT_024670 | AC107876 | 81389607 | 3 | chr15 | NT_024670 | AC103871 | 81434095 | 3 | 46803 | 0 | 0 | 46803 |
S/G/Y/R/B/O |
NT_024670 | AC103871 | 81434095 | 3 | chr15 | NT_024670 | AC015463 | 81556811 | 3 | 20247 | 0 | 0 | 20247 |
S/G/Y/R/B/O |
NT_024670 | AC015463 | 81556811 | 3 | chr15 | NT_024670 | AC011966 | 81577349 | 3 | 20544 | 0 | 0 | 20544 |
S/G/Y/R/B/O |
NT_024670 | AC011966 | 81577349 | 3 | chr15 | NT_024670 | AC021677 | 81724667 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_024670 | AC011966 | 81577349 | 3 |   |   | AC023844 | 81724667 | | 14267 | 0 | 0 | 14267 |
S/G/Y/R/B/O |
NT_024670 | AC021677 | 81724667 | 3 | chr15 | NT_024670 | AC009711 | 81900428 | 3 | 38305 | 0 | 0 | 38305 |
S/G/Y/R/B/O |
NT_024670 | AC021677 | 81724667 | 3 |   |   | AC023844 | 81577349 | | 176520 | 0 | 0 | 176520 |
S/G/Y/R/B/O |
NT_024670 | AC009711 | 81900428 | 3 | chr15 | NT_024670 | AC087593 | 82068047 | 3 | 9706 | 0 | 0 | 9706 |
S/G/Y/R/B/O |
NT_024670 | AC009711 | 81900428 | 3 |   |   | AC015556 | 81577349 | | 37417 | 0 | 0 | 37417 |
S/G/Y/R/B/O |
NT_024670 | AC009711 | 81900428 | 3 |   |   | AC023844 | 81724667 | | 37065 | 0 | 0 | 37065 |
S/G/Y/R/B/O |
NT_024670 | AC087593 | 82068047 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_024670 | AC087593 | 82068047 | 3 |   |   | AC015556 | 81900428 | | 89083 | 0 | 0 | 89083 |
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