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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_026446 | AC100720 | 17567678 | 2 | chr15 | NT_026446 | AC090983 | 17648795 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_026446 | AC100720 | 17567678 | 2 |   |   | AC019094 | 17173865 | | 15816 | 0 | 4871 | 20687 |
S/G/Y/R/B/O |
NT_026446 | AC100720 | 17567678 | 2 |   |   | AC019094 | 17173865 | | 15816 | 0 | 4871 | 20687 |
S/G/Y/R/B/O |
NT_026446 | AC090983 | 17648795 | 2 | chr15 | NT_026446 | AC090602 | 17830908 | 2 | 0 | 0 | 87590 | 87590 |
S/G/Y/R/B/O |
NT_026446 | AC090983 | 17648795 | 2 |   |   | AC019094 | 17173865 | | 78227 | 7097 | 32214 | 117538 |
S/G/Y/R/B/O |
NT_026446 | AC090983 | 17648795 | 2 |   |   | AC026049 | 17173865 | | 22871 | 0 | 35865 | 58736 |
S/G/Y/R/B/O |
NT_026446 | AC090602 | 17830908 | 2 | chr15 | NT_026446 | AC009696 | 17902032 | 3 | 0 | 0 | 15488 | 15488 |
S/G/Y/R/B/O |
NT_026446 | AC090602 | 17830908 | 2 |   |   | AC019094 | 17902032 | | 34538 | 0 | 23343 | 57881 |
S/G/Y/R/B/O |
NT_026446 | AC090602 | 17830908 | 2 |   |   | AC026049 | 17902032 | | 18415 | 2271 | 82885 | 103571 |
S/G/Y/R/B/O |
NT_026446 | AC009696 | 17902032 | 3 | chr15 | NT_026446 | AC124312 | 18060870 | 3 | 0 | 0 | 158350 | 158350 |
S/G/Y/R/B/O |
NT_026446 | AC009696 | 17902032 | 3 |   |   | AC090080 | 18060870 | | 21841 | 0 | 75865 | 97706 |
S/G/Y/R/B/O |
NT_026446 | AC124312 | 18060870 | 3 | chr15 | NT_026446 | AC124303 | 18067975 | 3 | 7111 | 0 | 0 | 7111 |
S/G/Y/R/B/O |
NT_026446 | AC124312 | 18060870 | 3 |   |   | AC090080 | 17902032 | | 21859 | 1715 | 75898 | 99472 |
S/G/Y/R/B/O |
NT_026446 | AC124303 | 18067975 | 3 | chr15 | NT_026446 | AC100774 | 18165835 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_026446 | AC124303 | 18067975 | 3 |   |   | AC080077 | 18067975 | | 109726 | 0 | 25365 | 135091 |
S/G/Y/R/B/O |
NT_026446 | AC124303 | 18067975 | 3 |   |   | AC084009 | 18067975 | | 15440 | 0 | 28913 | 44353 |
S/G/Y/R/B/O |
NT_026446 | AC100774 | 18165835 | 3 | chr15 | NT_026446 | AC124997 | 18349261 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_026446 | AC100774 | 18165835 | 3 |   |   | AC080077 | 18060870 | | 52187 | 0 | 18716 | 70903 |
S/G/Y/R/B/O |
NT_026446 | AC100774 | 18165835 | 3 |   |   | AC084009 | 18060870 | | 67627 | 4552 | 18211 | 90390 |
S/G/Y/R/B/O |
NT_026446 | AC124997 | 18349261 | 3 | chr15 | NT_026446 | AC124311 | 18392869 | 3 | 104641 | 0 | 0 | 104641 |
S/G/Y/R/B/O |
NT_026446 | AC124997 | 18349261 | 3 |   |   | AC004259 | 18060870 | | 110249 | 0 | 0 | 110249 |
S/G/Y/R/B/O |
NT_026446 | AC124997 | 18349261 | 3 |   |   | AC004738 | 18060870 | | 94120 | 0 | 0 | 94120 |
S/G/Y/R/B/O |
NT_026446 | AC124997 | 18349261 | 3 |   |   | AC084009 | 18535614 | | 17327 | 1592 | 0 | 18919 |
S/G/Y/R/B/O |
NT_026446 | AC124311 | 18392869 | 3 | chr15 | NT_026446 | AC020639 | 18535614 | 1 | 0 | 0 | 24011 | 24011 |
S/G/Y/R/B/O |
NT_026446 | AC124311 | 18392869 | 3 |   |   | AC004259 | 18392869 | | 36221 | 0 | 0 | 36221 |
S/G/Y/R/B/O |
NT_026446 | AC124311 | 18392869 | 3 |   |   | AC004259 | 18392869 | | 36221 | 0 | 0 | 36221 |
S/G/Y/R/B/O |
NT_026446 | AC020639 | 18535614 | 1 | chr15 | NT_026446 | AC023449 | 18544274 | 3 | 37918 | 0 | 69563 | 107481 |
S/G/Y/R/B/O |
NT_026446 | AC020639 | 18535614 | 1 | chr3 | NT_025670 | AC012154 | 104012486 | 3 | 14865 | 3249 | 3385 | 21499 |
S/G/Y/R/B/O |
NT_026446 | AC020639 | 18535614 | 1 | chr15 | NT_026446 | AC109512 | 18719610 | 2 | 75747 | 0 | 0 | 75747 |
S/G/Y/R/B/O |
NT_026446 | AC020639 | 18535614 | 1 |   |   | AC004738 | 18349261 | | 32628 | 0 | 7852 | 40480 |
S/G/Y/R/B/O |
NT_026446 | AC023449 | 18544274 | 3 | chr15 | NT_026446 | AC109512 | 18719610 | 2 | 113586 | 0 | 0 | 113586 |
S/G/Y/R/B/O |
NT_026446 | AC109512 | 18719610 | 2 | chr15 | NT_026446 | AC016266 | 18756834 | 3 | 39287 | 0 | 0 | 39287 |
S/G/Y/R/B/O |
NT_026446 | AC109512 | 18719610 | 2 | chr15 | NT_026446 | AC020639 | 18535614 | 1 | 75747 | 0 | 0 | 75747 |
S/G/Y/R/B/O |
NT_026446 | AC016266 | 18756834 | 3 | chr15 | NT_026446 | AC044913 | 18906221 | 3 | 47049 | 0 | 0 | 47049 |
S/G/Y/R/B/O |
NT_026446 | AC044913 | 18906221 | 3 | chr15 | NT_026446 | AC100836 | 19020721 | 3 | 12956 | 0 | 0 | 12956 |
S/G/Y/R/B/O |
NT_026446 | AC044913 | 18906221 | 3 |   |   | AC006598 | 18719610 | | 62914 | 0 | 0 | 62914 |
S/G/Y/R/B/O |
NT_026446 | AC100836 | 19020721 | 3 | chr15 | NT_026446 | AC012060 | 19199189 | 3 | 78380 | 0 | 0 | 78380 |
S/G/Y/R/B/O |
NT_026446 | AC100836 | 19020721 | 3 |   |   | AC006598 | 19020721 | | 14714 | 0 | 0 | 14714 |
S/G/Y/R/B/O |
NT_026446 | AC100836 | 19020721 | 3 |   |   | AC069500 | 18906221 | | 24985 | 4851 | 31142 | 60978 |
S/G/Y/R/B/O |
NT_026446 | AC100836 | 19020721 | 3 |   |   | AC080121 | 18906221 | | 65089 | 0 | 0 | 65089 |
S/G/Y/R/B/O |
NT_026446 | AC100836 | 19020721 | 3 |   |   | AC092702 | 18906221 | | 97248 | 0 | 0 | 97248 |
S/G/Y/R/B/O |
NT_026446 | AC012060 | 19199189 | 3 | chr15 | NT_026446 | AC103969 | 19284874 | 3 | 49398 | 0 | 0 | 49398 |
S/G/Y/R/B/O |
NT_026446 | AC012060 | 19199189 | 3 |   |   | AC069500 | 18906221 | | 32705 | 2383 | 12672 | 47760 |
S/G/Y/R/B/O |
NT_026446 | AC012060 | 19199189 | 3 |   |   | AC080121 | 18906221 | | 150621 | 0 | 0 | 150621 |
S/G/Y/R/B/O |
NT_026446 | AC012060 | 19199189 | 3 |   |   | AC092702 | 18906221 | | 78380 | 0 | 0 | 78380 |
S/G/Y/R/B/O |
NT_026446 | AC103969 | 19284874 | 3 | chr15 | NT_026446 | AC009878 | 19356442 | 3 | 3121 | 0 | 0 | 3121 |
S/G/Y/R/B/O |
NT_026446 | AC103969 | 19284874 | 3 |   |   | AC080121 | 19199189 | | 53568 | 0 | 0 | 53568 |
S/G/Y/R/B/O |
NT_026446 | AC009878 | 19356442 | 3 | chr15 | NT_026446 | AC011196 | 19551692 | 3 | 3856 | 0 | 0 | 3856 |
S/G/Y/R/B/O |
NT_026446 | AC009878 | 19356442 | 3 |   |   | AC022603 | 19551692 | | 128642 | 0 | 0 | 128642 |
S/G/Y/R/B/O |
NT_026446 | AC011196 | 19551692 | 3 | chr15 | NT_026446 | AC009698 | 19691971 | 3 | 123960 | 0 | 0 | 123960 |
S/G/Y/R/B/O |
NT_026446 | AC011196 | 19551692 | 3 | chr15 | NT_026446 | AC104569 | 19747381 | 3 | 22212 | 0 | 0 | 22212 |
S/G/Y/R/B/O |
NT_026446 | AC011196 | 19551692 | 3 |   |   | AC022603 | 19356442 | | 28210 | 0 | 0 | 28210 |
S/G/Y/R/B/O |
NT_026446 | AC009698 | 19691971 | 3 | chr15 | NT_026446 | AC104569 | 19747381 | 3 | 77620 | 0 | 0 | 77620 |
S/G/Y/R/B/O |
NT_026446 | AC104569 | 19747381 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_026446 | AC104569 | 19747381 | 3 | chr15 | NT_026446 | AC011196 | 19551692 | 3 | 22212 | 0 | 0 | 22212 |
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