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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_033276 | AC109513 | 82192735 | 2 | chr15 | NT_033276 | AC013489 | 82286227 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033276 | AC013489 | 82286227 | 3 | chr15 | NT_033276 | AC104259 | 82462163 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033276 | AC104259 | 82462163 | 2 | chr15 | NT_033276 | AC103982 | 82597506 | 3 | 20634 | 0 | 0 | 20634 |
S/G/Y/R/B/O |
NT_033276 | AC103982 | 82597506 | 3 | chr15 | NT_033276 | AC067805 | 82714100 | 3 | 0 | 0 | 80645 | 80645 |
S/G/Y/R/B/O |
NT_033276 | AC103982 | 82597506 | 3 |   |   | AC068969 | 82714100 | | 53768 | 0 | 6689 | 60457 |
S/G/Y/R/B/O |
NT_033276 | AC067805 | 82714100 | 3 | chr15 | NT_033276 | AC107954 | 82884983 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033276 | AC067805 | 82714100 | 3 |   |   | AC068969 | 82462163 | | 92862 | 2133 | 16753 | 111748 |
S/G/Y/R/B/O |
NT_033276 | AC107954 | 82884983 | 3 | chr15 | NT_033276 | AC013565 | 82914517 | 3 | 10834 | 0 | 0 | 10834 |
S/G/Y/R/B/O |
NT_033276 | AC107954 | 82884983 | 3 |   |   | AC055784 | 82914517 | | 10523 | 8444 | 18034 | 37001 |
S/G/Y/R/B/O |
NT_033276 | AC013565 | 82914517 | 3 | chr15 | NT_033276 | AC124068 | 83091925 | 3 | 16491 | 0 | 0 | 16491 |
S/G/Y/R/B/O |
NT_033276 | AC013565 | 82914517 | 3 |   |   | AC005318 | 82914517 | | 16726 | 0 | 0 | 16726 |
S/G/Y/R/B/O |
NT_033276 | AC013565 | 82914517 | 3 |   |   | AC055784 | 82914517 | | 70601 | 11263 | 19865 | 101729 |
S/G/Y/R/B/O |
NT_033276 | AC124068 | 83091925 | 3 | chr15 | NT_033276 | AC133637 | 83243485 | 3 | 4421 | 0 | 0 | 4421 |
S/G/Y/R/B/O |
NT_033276 | AC124068 | 83091925 | 3 |   |   | AC005316 | 83091925 | | 32832 | 0 | 0 | 32832 |
S/G/Y/R/B/O |
NT_033276 | AC124068 | 83091925 | 3 |   |   | AC005317 | 83091925 | | 89412 | 0 | 0 | 89412 |
S/G/Y/R/B/O |
NT_033276 | AC124068 | 83091925 | 3 |   |   | AC005318 | 83091925 | | 87529 | 0 | 0 | 87529 |
S/G/Y/R/B/O |
NT_033276 | AC133637 | 83243485 | 3 | chr15 | NT_033276 | AC013391 | 83290178 | 3 | 15039 | 0 | 0 | 15039 |
S/G/Y/R/B/O |
NT_033276 | AC133637 | 83243485 | 3 |   |   | AC005316 | 83243485 | | 61653 | 0 | 0 | 61653 |
S/G/Y/R/B/O |
NT_033276 | AC133637 | 83243485 | 3 |   |   | AC005316 | 83243485 | | 61653 | 0 | 0 | 61653 |
S/G/Y/R/B/O |
NT_033276 | AC133637 | 83243485 | 3 |   |   | AC005317 | 83243485 | | 61653 | 0 | 0 | 61653 |
S/G/Y/R/B/O |
NT_033276 | AC133637 | 83243485 | 3 |   |   | AC005317 | 83243485 | | 61653 | 0 | 0 | 61653 |
S/G/Y/R/B/O |
NT_033276 | AC013391 | 83290178 | 3 | chr15 | NT_033276 | AC013787 | 83431888 | 3 | 69070 | 0 | 0 | 69070 |
S/G/Y/R/B/O |
NT_033276 | AC013391 | 83290178 | 3 |   |   | AC005316 | 83091925 | | 40728 | 0 | 0 | 40728 |
S/G/Y/R/B/O |
NT_033276 | AC013391 | 83290178 | 3 |   |   | AC005317 | 83091925 | | 37343 | 0 | 0 | 37343 |
S/G/Y/R/B/O |
NT_033276 | AC013787 | 83431888 | 3 | chr15 | NT_033276 | AC079075 | 83608192 | 3 | 108947 | 0 | 0 | 108947 |
S/G/Y/R/B/O |
NT_033276 | AC079075 | 83608192 | 3 | chr15 | NT_033276 | AC018988 | 83709197 | 3 | 53285 | 0 | 0 | 53285 |
S/G/Y/R/B/O |
NT_033276 | AC079075 | 83608192 | 3 | chr15 | NT_033276 | AC013281 | 83772733 | 1 | 51558 | 0 | 0 | 51558 |
S/G/Y/R/B/O |
NT_033276 | AC079075 | 83608192 | 3 |   |   | AC015494 | 83431888 | | 54472 | 8799 | 18734 | 82005 |
S/G/Y/R/B/O |
NT_033276 | AC079075 | 83608192 | 3 |   |   | AC087478 | 83709197 | | 82266 | 2513 | 866 | 85645 |
S/G/Y/R/B/O |
NT_033276 | AC018988 | 83709197 | 3 | chr15 | NT_033276 | AC013281 | 83772733 | 1 | 49483 | 2412 | 14483 | 66378 |
S/G/Y/R/B/O |
NT_033276 | AC018988 | 83709197 | 3 |   |   | AC015494 | 83772733 | | 85136 | 3195 | 18067 | 106398 |
S/G/Y/R/B/O |
NT_033276 | AC018988 | 83709197 | 3 |   |   | AC087478 | 83608192 | | 69534 | 0 | 11275 | 80809 |
S/G/Y/R/B/O |
NT_033276 | AC013281 | 83772733 | 1 | chr15 | NT_033276 | AC027176 | 83889638 | 2 | 2986 | 0 | 0 | 2986 |
S/G/Y/R/B/O |
NT_033276 | AC013281 | 83772733 | 1 | chr15 | NT_033276 | AC079075 | 83608192 | 3 | 51558 | 0 | 0 | 51558 |
S/G/Y/R/B/O |
NT_033276 | AC013281 | 83772733 | 1 |   |   | AC015494 | 83608192 | | 52763 | 7485 | 35777 | 96025 |
S/G/Y/R/B/O |
NT_033276 | AC013281 | 83772733 | 1 |   |   | AC087478 | 83608192 | | 59991 | 5965 | 52370 | 118326 |
S/G/Y/R/B/O |
NT_033276 | AC027176 | 83889638 | 2 | chr15 | NT_033276 | AC087284 | 83952980 | 2 | 0 | 0 | 115178 | 115178 |
S/G/Y/R/B/O |
NT_033276 | AC027176 | 83889638 | 2 |   |   | AC027638 | 83772733 | | 73603 | 0 | 38031 | 111634 |
S/G/Y/R/B/O |
NT_033276 | AC027176 | 83889638 | 2 |   |   | AC027638 | 83772733 | | 73603 | 0 | 38031 | 111634 |
S/G/Y/R/B/O |
NT_033276 | AC087284 | 83952980 | 2 | chr15 | NT_033276 | AC092769 | 84114260 | 2 | 22479 | 0 | 0 | 22479 |
S/G/Y/R/B/O |
NT_033276 | AC087284 | 83952980 | 2 |   |   | AC027638 | 83889638 | | 116490 | 2650 | 43136 | 162276 |
S/G/Y/R/B/O |
NT_033276 | AC087284 | 83952980 | 2 |   |   | AC027638 | 83889638 | | 116490 | 2650 | 43136 | 162276 |
S/G/Y/R/B/O |
NT_033276 | AC092769 | 84114260 | 2 | chr15 | NT_033276 | AC091167 | 84196428 | 2 | 0 | 1231 | 3072 | 4303 |
S/G/Y/R/B/O |
NT_033276 | AC092769 | 84114260 | 2 |   |   | AC027638 | 84114260 | | 10118 | 2645 | 0 | 12763 |
S/G/Y/R/B/O |
NT_033276 | AC091167 | 84196428 | 2 | chr15 | NT_033276 | AC018946 | 84373276 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033276 | AC091167 | 84196428 | 2 |   |   | AC058820 | 853487 | | 44664 | 10993 | 28119 | 83776 |
S/G/Y/R/B/O |
NT_033276 | AC091167 | 84196428 | 2 |   |   | AC058820 | 853487 | | 44664 | 10993 | 28119 | 83776 |
S/G/Y/R/B/O |
NT_033276 | AC018946 | 84373276 | 3 | chr15 | NT_033276 | AC103739 | 84546977 | 3 | 19417 | 0 | 0 | 19417 |
S/G/Y/R/B/O |
NT_033276 | AC018946 | 84373276 | 3 |   |   | AC016353 | 84114260 | | 63053 | 4169 | 6945 | 74167 |
S/G/Y/R/B/O |
NT_033276 | AC018946 | 84373276 | 3 |   |   | AC027478 | 84114260 | | 58123 | 6322 | 18415 | 82860 |
S/G/Y/R/B/O |
NT_033276 | AC103739 | 84546977 | 3 | chr15 | NT_033276 | AC021422 | 84688928 | 1 | 10647 | 0 | 34707 | 45354 |
S/G/Y/R/B/O |
NT_033276 | AC103739 | 84546977 | 3 |   |   | AC004587 | 84546977 | | 26321 | 0 | 0 | 26321 |
S/G/Y/R/B/O |
NT_033276 | AC103739 | 84546977 | 3 |   |   | AC027478 | 84688928 | | 21795 | 0 | 28467 | 50262 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 | chr15 | NT_033276 | AC124248 | 84740488 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 | chr15 | NT_033276 | AC002312 | 85059552 | 3 | 61679 | 0 | 39595 | 101274 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 | chr15 | NT_033276 | AC002312 | 85059552 | 3 | 61679 | 0 | 39595 | 101274 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 |   |   | AC000379 | 84688928 | | 61627 | 0 | 18298 | 79925 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 |   |   | AC000379 | 84688928 | | 61627 | 0 | 18298 | 79925 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 |   |   | AC004581 | 85059552 | | 66867 | 0 | 0 | 66867 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 |   |   | AC004581 | 85059552 | | 66867 | 0 | 0 | 66867 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 |   |   | AC004581 | 85059552 | | 66867 | 0 | 0 | 66867 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 |   |   | AC004581 | 85059552 | | 66867 | 0 | 0 | 66867 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 |   |   | AC005800 | 85059552 | | 22983 | 0 | 0 | 22983 |
S/G/Y/R/B/O |
NT_033276 | AC021422 | 84688928 | 1 |   |   | AC005800 | 85059552 | | 22983 | 0 | 0 | 22983 |
S/G/Y/R/B/O |
NT_033276 | AC124248 | 84740488 | 2 | chr15 | NT_033276 | AC067986 | 84769688 | 2 | 111978 | 0 | 0 | 111978 |
S/G/Y/R/B/O |
NT_033276 | AC124248 | 84740488 | 2 |   |   | AC004586 | 84546977 | | 56146 | 0 | 21207 | 77353 |
S/G/Y/R/B/O |
NT_033276 | AC124248 | 84740488 | 2 |   |   | AC004586 | 84546977 | | 56146 | 0 | 21207 | 77353 |
S/G/Y/R/B/O |
NT_033276 | AC067986 | 84769688 | 2 | chr15 | NT_033276 | AC068831 | 84929469 | 2 | 38307 | 0 | 0 | 38307 |
S/G/Y/R/B/O |
NT_033276 | AC067986 | 84769688 | 2 |   |   | AC005800 | 76897339 | | 66365 | 0 | 0 | 66365 |
S/G/Y/R/B/O |
NT_033276 | AC067986 | 84769688 | 2 |   |   | AC015841 | 76897339 | | 33421 | 3284 | 1163 | 37868 |
S/G/Y/R/B/O |
NT_033276 | AC068831 | 84929469 | 2 | chr15 | NT_033276 | AC127520 | 85020600 | 1 | 0 | 0 | 12203 | 12203 |
S/G/Y/R/B/O |
NT_033276 | AC068831 | 84929469 | 2 | chr15 | NT_033277 | AC002468 | 85372385 | 3 | 34366 | 0 | 0 | 34366 |
S/G/Y/R/B/O |
NT_033276 | AC068831 | 84929469 | 2 |   |   | AC003004 | 85372385 | | 10453 | 0 | 0 | 10453 |
S/G/Y/R/B/O |
NT_033276 | AC068831 | 84929469 | 2 |   |   | AC015841 | 85372385 | | 106220 | 14308 | 13892 | 134420 |
S/G/Y/R/B/O |
NT_033276 | AC068831 | 84929469 | 2 |   |   | AC018617 | 85372385 | | 106732 | 0 | 0 | 106732 |
S/G/Y/R/B/O |
NT_033276 | AC127520 | 85020600 | 1 | chr15 | NT_033276 | AC002312 | 85059552 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033276 | AC002312 | 85059552 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_033276 | AC002312 | 85059552 | 3 | chr15 | NT_033276 | AC021422 | 84688928 | 1 | 61679 | 0 | 39595 | 101274 |
S/G/Y/R/B/O |
NT_033276 | AC002312 | 85059552 | 3 | chr15 | NT_033276 | AC021422 | 84688928 | 1 | 61679 | 0 | 39595 | 101274 |
S/G/Y/R/B/O |
NT_033276 | AC002312 | 85059552 | 3 |   |   | AC000379 | 18262726 | | 95491 | 0 | 0 | 95491 |
S/G/Y/R/B/O |
NT_033276 | AC002312 | 85059552 | 3 |   |   | AC004581 | 18262726 | | 28592 | 0 | 0 | 28592 |
S/G/Y/R/B/O |
NT_033276 | AC002312 | 85059552 | 3 |   |   | AC004581 | 18262726 | | 28592 | 0 | 0 | 28592 |
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