Chromosome 15 - Clone Overlaps

Chromosome 15 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_010362	NT_037852	NT_033275	NT_035354	NT_010346	NT_026446	NT_024683	NT_010280
NT_033278	NT_010363	NT_037853	NT_030828	NT_010194	NT_037854	NT_037855	NT_010265
NT_024654	NT_037856	NT_010356	NT_019601	NT_024670	NT_033276	NT_033277	NT_037857
NT_010274	NT_037858	NT_037859	NT_035324	NT_035325

NT_010346

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_010346	AC011767	15841091	3	chr15	NT_010346	AC090764	16021324	1	17688	0	0	17688
S/G/Y/R/B/O	NT_010346	AC011767	15841091	3			AC016204	25511618		140390	0	0	140390
S/G/Y/R/B/O	NT_010346	AC011767	15841091	3			AC016204	25511618		140390	0	0	140390
S/G/Y/R/B/O	NT_010346	AC011767	15841091	3			AC016204	25511618		140390	0	0	140390
S/G/Y/R/B/O	NT_010346	AC011767	15841091	3			AC016204	25511618		140390	0	0	140390
S/G/Y/R/B/O	NT_010346	AC011767	15841091	3			AC016446	25511618		18162	0	0	18162
S/G/Y/R/B/O	NT_010346	AC011767	15841091	3			AC016446	25511618		18162	0	0	18162
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_010346	AC129914	16057084	2	0	852	0	852
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_010346	AC116165	16295676	2	12952	0	1768	14720
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_010346	AC116165	16295676	2	12952	0	1768	14720
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_010346	AC116166	16170810	3	63892	0	0	63892
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_010346	AC116166	16170810	3	63892	0	0	63892
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_033278	AC135069	21745354	1	69653	0	16976	86629
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_033278	AC135069	21745354	1	69653	0	16976	86629
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_033278	AC135069	21745354	1	69653	0	16976	86629
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1	chr15	NT_033278	AC135069	21745354	1	69653	0	16976	86629
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1			AC016446	15841091		71372	0	45354	116726
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1			AC016446	15841091		71372	0	45354	116726
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1			AC135177	21745354		85002	0	32449	117451
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1			AC135177	21745354		85002	0	32449	117451
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1			AC135177	21745354		85002	0	32449	117451
S/G/Y/R/B/O	NT_010346	AC090764	16021324	1			AC135177	21745354		85002	0	32449	117451
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_010346	AC116166	16170810	3	109055	1042	1201	111298
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_010346	AC016033	16368142	1	50014	2074	16387	68475
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_033278	AC091304	21415871	3	28818	2063	48324	79205
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_010346	AC116165	16295676	2	163786	2076	29884	195746
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_033278	AC121562	21617912	2	134990	16233	41247	192470
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_033278	AC124271	21595089	2	10610	0	80856	91466
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_033278	AC124271	21595089	2	10610	0	80856	91466
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_010346	AC127031	16365575	2	30429	2082	4818	37329
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_033278	AC135069	21745354	1	61152	0	0	61152
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2	chr15	NT_033278	AC135069	21745354	1	61152	0	0	61152
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC011100	21745354		21379	4013	58003	83395
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC018348	16368142		28749	2063	62501	93313
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC079017	16368142		11735	0	0	11735
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC079017	16368142		11735	0	0	11735
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC121153	16170810		93023	2076	20893	115992
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC121323	16170810		157132	2078	25080	184290
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC131290	16365575		11422	3545	93917	108884
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC131290	16365575		11422	3545	93917	108884
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC131291	16365575		107701	6807	31656	146164
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC131291	16365575		107701	6807	31656	146164
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC135177	21745354		25359	0	24150	49509
S/G/Y/R/B/O	NT_010346	AC129914	16057084	2			AC135177	21745354		25359	0	24150	49509
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3	chr15	NT_010346	AC116165	16295676	2	122787	0	12981	135768
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3	chr15	NT_010346	AC016033	16368142	1	40851	0	9207	50058
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3	chr15	NT_035354	AC090411	15563811	1	33140	0	0	33140
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3	chr15	NT_010346	AC090764	16021324	1	63892	0	0	63892
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3	chr15	NT_010346	AC090764	16021324	1	63892	0	0	63892
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3	chr15	NT_033278	AC121562	21617912	2	83371	0	0	83371
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3	chr15	NT_033278	AC135069	21745354	1	36630	0	14916	51546
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3	chr15	NT_033278	AC135069	21745354	1	36630	0	14916	51546
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC016446	16368142		15942	2425	13424	31791
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC121323	16295676		76007	0	0	76007
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC131291	16057084		34581	427	0	35008
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC131291	16057084		34581	427	0	35008
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC132916	16057084		15869	0	0	15869
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC132916	16057084		15869	0	0	15869
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC134393	16057084		22049	0	0	22049
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC134393	16057084		22049	0	0	22049
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC135177	21745354		54124	1789	60312	116225
S/G/Y/R/B/O	NT_010346	AC116166	16170810	3			AC135177	21745354		54124	1789	60312	116225
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_010346	AC127031	16365575	2	27835	0	0	27835
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_010346	AC016033	16368142	1	57802	0	15321	73123
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_010346	AC090764	16021324	1	12952	0	1768	14720
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_010346	AC090764	16021324	1	12952	0	1768	14720
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_033278	AC121562	21617912	2	141877	5527	13069	160473
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_033278	AC124271	21595089	2	28218	0	20431	48649
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_033278	AC124271	21595089	2	28218	0	20431	48649
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_010346	AC129914	16057084	2	163786	2076	29884	195746
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_033278	AC135069	21745354	1	74047	0	10406	84453
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2	chr15	NT_033278	AC135069	21745354	1	74047	0	10406	84453
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC011100	21745354		15966	0	18407	34373
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC016446	16368142		12900	0	1831	14731
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC018348	16368142		14370	0	57352	71722
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC121153	16170810		52204	0	3590	55794
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC121323	16170810		27702	0	106609	134311
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC131291	16057084		73873	0	10562	84435
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC131291	16057084		73873	0	10562	84435
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC132916	16057084		38208	0	24184	62392
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC132916	16057084		38208	0	24184	62392
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC135177	21745354		37543	0	38729	76272
S/G/Y/R/B/O	NT_010346	AC116165	16295676	2			AC135177	21745354		37543	0	38729	76272
S/G/Y/R/B/O	NT_010346	AC127031	16365575	2	chr15	NT_010346	AC016033	16368142	1	18762	0	0	18762
S/G/Y/R/B/O	NT_010346	AC127031	16365575	2	chr15	NT_033278	AC121562	21617912	2	27911	974	104	28989
S/G/Y/R/B/O	NT_010346	AC127031	16365575	2	chr15	NT_010346	AC129914	16057084	2	30429	2082	4818	37329
S/G/Y/R/B/O	NT_010346	AC127031	16365575	2			AC121153	16295676		25997	975	2958	29930
S/G/Y/R/B/O	NT_010346	AC127031	16365575	2			AC121323	16295676		27813	0	442	28255
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1	chr15	NT_010346	AC073446	16468177	3	56477	0	2179	58656
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1	chr15	NT_035354	AC025138	15641818	3	29507	0	10919	40426
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1	chr15	NT_035354	AC090411	15563811	1	37770	0	17974	55744
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1	chr15	NT_035354	AC100757	15201226	3	27664	0	0	27664
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1	chr15	NT_010346	AC116165	16295676	2	57802	0	15321	73123
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1	chr15	NT_010346	AC116166	16170810	3	40851	0	9207	50058
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1	chr15	NT_033278	AC121562	21617912	2	45889	0	21191	67080
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1	chr15	NT_010346	AC129914	16057084	2	50014	2074	16387	68475
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC018348	16057084		10312	0	88768	99080
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC023310	93181169		53938	0	6155	60093
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC027267	15641818		37581	8381	3834	49796
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC079017	16468177		28892	3749	11661	44302
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC079017	16468177		28892	3749	11661	44302
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC100755	21415871		72967	0	0	72967
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC100756	21415871		73428	0	0	73428
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC100760	15201226		32374	0	68126	100500
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC109338	15201226		47219	0	0	47219
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC109338	15201226		47219	0	0	47219
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC121153	23065746		38520	0	41107	79627
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC121323	23065746		62458	0	10904	73362
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC131280	16057084		21477	0	6151	27628
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC131280	16057084		21477	0	6151	27628
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC131291	16057084		44757	0	11672	56429
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC131291	16057084		44757	0	11672	56429
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC132916	16057084		23876	0	77625	101501
S/G/Y/R/B/O	NT_010346	AC016033	16368142	1			AC132916	16057084		23876	0	77625	101501
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3	chr15	NT_010346	AC126407	16648316	3	0	0	0	0
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3	chr15	NT_035354	AC025138	15641818	3	20730	0	0	20730
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3	chr15	NT_035354	AC025138	15641818	3	20730	0	0	20730
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC027267	15641818		70838	8641	19088	98567
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC027267	15641818		70838	8641	19088	98567
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC079017	15641818		57671	0	5148	62819
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC079017	15641818		57671	0	5148	62819
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC079017	15641818		57671	0	5148	62819
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC079017	15641818		57671	0	5148	62819
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC109338	15563811		99085	0	0	99085
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC109338	15563811		99085	0	0	99085
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC109338	15563811		99085	0	0	99085
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC109338	15563811		99085	0	0	99085
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC135174	21617912		62731	0	0	62731
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC135174	21617912		62731	0	0	62731
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC135174	21617912		62731	0	0	62731
S/G/Y/R/B/O	NT_010346	AC073446	16468177	3			AC135174	21617912		62731	0	0	62731
S/G/Y/R/B/O	NT_010346	AC126407	16648316	3	chr15	NT_010346	AC124309	16745755	2	8129	0	0	8129
S/G/Y/R/B/O	NT_010346	AC126407	16648316	3			AC100754	21617912		56380	0	0	56380
S/G/Y/R/B/O	NT_010346	AC126407	16648316	3			AC135174	16745755		56380	0	0	56380
S/G/Y/R/B/O	NT_010346	AC126407	16648316	3			AC135174	16745755		56380	0	0	56380
S/G/Y/R/B/O	NT_010346	AC124309	16745755	2	chr15	NT_010346	AC103750	16777411	3	0	0	0	0
S/G/Y/R/B/O	NT_010346	AC124309	16745755	2			AC073214	16745755		24458	1876	20642	46976
S/G/Y/R/B/O	NT_010346	AC103750	16777411	3	chr15	NT_010346	AC087490	16956897	3	0	0	0	0
S/G/Y/R/B/O	NT_010346	AC103750	16777411	3			AC073214	16648316		57632	6580	29770	93982
S/G/Y/R/B/O	NT_010346	AC087490	16956897	3	chr15	NT_010346	AC021439	17045221	3	0	0	0	0
S/G/Y/R/B/O	NT_010346	AC087490	16956897	3			AC069138	16648316		63151	4706	43253	111110
S/G/Y/R/B/O	NT_010346	AC087490	16956897	3			AC073214	16648316		29866	1871	14852	46589
S/G/Y/R/B/O	NT_010346	AC021439	17045221	3	chr15	NT_010346	AC087474	17173865	3	0	0	0	0
S/G/Y/R/B/O	NT_010346	AC021439	17045221	3			AC069138	16648316		46766	1842	6853	55461
S/G/Y/R/B/O	NT_010346	AC087474	17173865	3	chr15	NT_010346	AC087463	17329303	3	7141	0	0	7141
S/G/Y/R/B/O	NT_010346	AC087474	17173865	3			AC135325	17329303		28383	0	0	28383
S/G/Y/R/B/O	NT_010346	AC087474	17173865	3			AC135325	17329303		28383	0	0	28383
S/G/Y/R/B/O	NT_010346	AC087463	17329303	3
S/G/Y/R/B/O	NT_010346	AC087463	17329303	3			AC026092	17329303		103743	4963	18299	127005
S/G/Y/R/B/O	NT_010346	AC087463	17329303	3			AC067951	17329303		21108	0	7471	28579
S/G/Y/R/B/O	NT_010346	AC087463	17329303	3			AC135325	17173865		123399	0	0	123399
S/G/Y/R/B/O	NT_010346	AC087463	17329303	3			AC135325	17173865		123399	0	0	123399