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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_024654 | AC022188 | 67093554 | 2 | chr15 | NT_024654 | AC018943 | 67143038 | 3 | 28627 | 0 | 0 | 28627 |
S/G/Y/R/B/O |
NT_024654 | AC018943 | 67143038 | 3 | chr15 | NT_024654 | AC108137 | 67295817 | 3 | 23669 | 0 | 0 | 23669 |
S/G/Y/R/B/O |
NT_024654 | AC108137 | 67295817 | 3 | chr15 | NT_024654 | AC013486 | 67449103 | 2 | 117804 | 0 | 0 | 117804 |
S/G/Y/R/B/O |
NT_024654 | AC013486 | 67449103 | 2 | chr15 | NT_024654 | AC010931 | 67493276 | 2 | 33216 | 0 | 0 | 33216 |
S/G/Y/R/B/O |
NT_024654 | AC010931 | 67493276 | 2 | chr15 | NT_024654 | AC023545 | 67581019 | 2 | 64177 | 0 | 0 | 64177 |
S/G/Y/R/B/O |
NT_024654 | AC023545 | 67581019 | 2 | chr15 | NT_024654 | AC023300 | 67625103 | 1 | 130151 | 0 | 0 | 130151 |
S/G/Y/R/B/O |
NT_024654 | AC023545 | 67581019 | 2 | chr15 | NT_024654 | AC090826 | 67732429 | 2 | 44639 | 0 | 0 | 44639 |
S/G/Y/R/B/O |
NT_024654 | AC023545 | 67581019 | 2 | chr15 | NT_024654 | AC090826 | 67732429 | 2 | 44639 | 0 | 0 | 44639 |
S/G/Y/R/B/O |
NT_024654 | AC023300 | 67625103 | 1 | chr15 | NT_024654 | AC090826 | 67732429 | 2 | 28446 | 0 | 60809 | 89255 |
S/G/Y/R/B/O |
NT_024654 | AC090826 | 67732429 | 2 | chr15 | NT_024654 | AC012435 | 67813392 | 3 | 25284 | 0 | 0 | 25284 |
S/G/Y/R/B/O |
NT_024654 | AC090826 | 67732429 | 2 | chr15 | NT_024654 | AC023545 | 67581019 | 2 | 44639 | 0 | 0 | 44639 |
S/G/Y/R/B/O |
NT_024654 | AC090826 | 67732429 | 2 | chr15 | NT_024654 | AC023545 | 67581019 | 2 | 44639 | 0 | 0 | 44639 |
S/G/Y/R/B/O |
NT_024654 | AC012435 | 67813392 | 3 | chr15 | NT_024654 | AC100835 | 67930787 | 3 | 15582 | 0 | 0 | 15582 |
S/G/Y/R/B/O |
NT_024654 | AC100835 | 67930787 | 3 | chr15 | NT_024654 | AC091230 | 68095823 | 1 | 31270 | 0 | 0 | 31270 |
S/G/Y/R/B/O |
NT_024654 | AC100835 | 67930787 | 3 |   |   | AC020705 | 67813392 | | 31352 | 0 | 0 | 31352 |
S/G/Y/R/B/O |
NT_024654 | AC091230 | 68095823 | 1 | chr15 | NT_024654 | AC125435 | 68173161 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024654 | AC091230 | 68095823 | 1 |   |   | AC020705 | 5564017 | | 73678 | 2694 | 34214 | 110586 |
S/G/Y/R/B/O |
NT_024654 | AC091230 | 68095823 | 1 |   |   | AC020705 | 5564017 | | 73678 | 2694 | 34214 | 110586 |
S/G/Y/R/B/O |
NT_024654 | AC125435 | 68173161 | 1 | chr15 | NT_024654 | AC015720 | 68335075 | 3 | 0 | 0 | 3412 | 3412 |
S/G/Y/R/B/O |
NT_024654 | AC015720 | 68335075 | 3 | chr15 | NT_024654 | AC113208 | 68491629 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024654 | AC113208 | 68491629 | 3 | chr15 | NT_024654 | AC024552 | 68528998 | 2 | 116093 | 0 | 0 | 116093 |
S/G/Y/R/B/O |
NT_024654 | AC024552 | 68528998 | 2 | chr15 | NT_024654 | AC105137 | 68686911 | 2 | 0 | 0 | 14568 | 14568 |
S/G/Y/R/B/O |
NT_024654 | AC105137 | 68686911 | 2 | chr15 | NT_024654 | AC105036 | 68844430 | 2 | 18757 | 1724 | 11548 | 32029 |
S/G/Y/R/B/O |
NT_024654 | AC105036 | 68844430 | 2 | chr15 | NT_024654 | AC105020 | 68987732 | 2 | 5459 | 0 | 0 | 5459 |
S/G/Y/R/B/O |
NT_024654 | AC105020 | 68987732 | 2 | chr15 | NT_024654 | AC019294 | 69087449 | 3 | 8780 | 0 | 0 | 8780 |
S/G/Y/R/B/O |
NT_024654 | AC019294 | 69087449 | 3 | chr15 | NT_024654 | AC027104 | 69251759 | 3 | 92278 | 0 | 0 | 92278 |
S/G/Y/R/B/O |
NT_024654 | AC019294 | 69087449 | 3 |   |   | AC016837 | 68844430 | | 117438 | 0 | 0 | 117438 |
S/G/Y/R/B/O |
NT_024654 | AC019294 | 69087449 | 3 |   |   | AC066592 | 69251759 | | 15220 | 12075 | 28916 | 56211 |
S/G/Y/R/B/O |
NT_024654 | AC019294 | 69087449 | 3 |   |   | AC068838 | 69251759 | | 19439 | 2043 | 0 | 21482 |
S/G/Y/R/B/O |
NT_024654 | AC019294 | 69087449 | 3 |   |   | AC069463 | 69251759 | | 15220 | 12075 | 28916 | 56211 |
S/G/Y/R/B/O |
NT_024654 | AC027104 | 69251759 | 3 | chr15 | NT_024654 | AC087456 | 69339539 | 3 | 70616 | 0 | 0 | 70616 |
S/G/Y/R/B/O |
NT_024654 | AC027104 | 69251759 | 3 |   |   | AC016837 | 68987732 | | 114459 | 0 | 0 | 114459 |
S/G/Y/R/B/O |
NT_024654 | AC027104 | 69251759 | 3 |   |   | AC026180 | 69087449 | | 47925 | 0 | 3307 | 51232 |
S/G/Y/R/B/O |
NT_024654 | AC027104 | 69251759 | 3 |   |   | AC066592 | 69087449 | | 15246 | 7950 | 21009 | 44205 |
S/G/Y/R/B/O |
NT_024654 | AC027104 | 69251759 | 3 |   |   | AC068838 | 69087449 | | 71086 | 2041 | 18222 | 91349 |
S/G/Y/R/B/O |
NT_024654 | AC027104 | 69251759 | 3 |   |   | AC069463 | 69087449 | | 15246 | 7950 | 21009 | 44205 |
S/G/Y/R/B/O |
NT_024654 | AC087456 | 69339539 | 3 | chr15 | NT_024654 | AC091100 | 69439748 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024654 | AC087456 | 69339539 | 3 |   |   | AC026033 | 69339539 | | 14202 | 2462 | 3136 | 19800 |
S/G/Y/R/B/O |
NT_024654 | AC087456 | 69339539 | 3 |   |   | AC026180 | 69339539 | | 58040 | 0 | 3284 | 61324 |
S/G/Y/R/B/O |
NT_024654 | AC087456 | 69339539 | 3 |   |   | AC068838 | 69251759 | | 55019 | 0 | 71084 | 126103 |
S/G/Y/R/B/O |
NT_024654 | AC091100 | 69439748 | 2 | chr15 | NT_024654 | AC027243 | 69557350 | 1 | 44080 | 0 | 0 | 44080 |
S/G/Y/R/B/O |
NT_024654 | AC091100 | 69439748 | 2 |   |   | AC026033 | 69251759 | | 35801 | 4180 | 23113 | 63094 |
S/G/Y/R/B/O |
NT_024654 | AC091100 | 69439748 | 2 |   |   | AC068322 | 69557350 | | 13216 | 14177 | 1567 | 28960 |
S/G/Y/R/B/O |
NT_024654 | AC091100 | 69439748 | 2 |   |   | AC090268 | 69557350 | | 58265 | 1910 | 0 | 60175 |
S/G/Y/R/B/O |
NT_024654 | AC027243 | 69557350 | 1 | chr15 | NT_024654 | AC090179 | 69664276 | 3 | 111664 | 0 | 0 | 111664 |
S/G/Y/R/B/O |
NT_024654 | AC027243 | 69557350 | 1 |   |   | AC068322 | 69557350 | | 56462 | 42975 | 40032 | 139469 |
S/G/Y/R/B/O |
NT_024654 | AC027243 | 69557350 | 1 |   |   | AC090268 | 69664276 | | 188143 | 0 | 0 | 188143 |
S/G/Y/R/B/O |
NT_024654 | AC027243 | 69557350 | 1 |   |   | AC090540 | 69664276 | | 10828 | 2088 | 0 | 12916 |
S/G/Y/R/B/O |
NT_024654 | AC090179 | 69664276 | 3 | chr15 | NT_024654 | AC090751 | 69825862 | 3 | 66393 | 0 | 0 | 66393 |
S/G/Y/R/B/O |
NT_024654 | AC090179 | 69664276 | 3 |   |   | AC024058 | 69439748 | | 27555 | 0 | 0 | 27555 |
S/G/Y/R/B/O |
NT_024654 | AC090179 | 69664276 | 3 |   |   | AC068322 | 69557350 | | 27534 | 18047 | 23363 | 68944 |
S/G/Y/R/B/O |
NT_024654 | AC090179 | 69664276 | 3 |   |   | AC069527 | 69557350 | | 10084 | 4881 | 0 | 14965 |
S/G/Y/R/B/O |
NT_024654 | AC090179 | 69664276 | 3 |   |   | AC090268 | 69557350 | | 82495 | 0 | 0 | 82495 |
S/G/Y/R/B/O |
NT_024654 | AC090179 | 69664276 | 3 |   |   | AC090473 | 69557350 | | 13432 | 0 | 25397 | 38829 |
S/G/Y/R/B/O |
NT_024654 | AC090179 | 69664276 | 3 |   |   | AC090540 | 69557350 | | 61233 | 2088 | 0 | 63321 |
S/G/Y/R/B/O |
NT_024654 | AC090751 | 69825862 | 3 | chr15 | NT_024654 | AC015798 | 69967355 | 3 | 0 | 0 | 16492 | 16492 |
S/G/Y/R/B/O |
NT_024654 | AC090751 | 69825862 | 3 |   |   | AC026163 | 69967355 | | 12034 | 0 | 1050 | 13084 |
S/G/Y/R/B/O |
NT_024654 | AC090751 | 69825862 | 3 |   |   | AC066591 | 69557350 | | 42853 | 2686 | 4563 | 50102 |
S/G/Y/R/B/O |
NT_024654 | AC090751 | 69825862 | 3 |   |   | AC069527 | 69557350 | | 34163 | 6615 | 24401 | 65179 |
S/G/Y/R/B/O |
NT_024654 | AC090751 | 69825862 | 3 |   |   | AC087844 | 69557350 | | 107589 | 0 | 0 | 107589 |
S/G/Y/R/B/O |
NT_024654 | AC090751 | 69825862 | 3 |   |   | AC090182 | 69664276 | | 95813 | 0 | 0 | 95813 |
S/G/Y/R/B/O |
NT_024654 | AC090751 | 69825862 | 3 |   |   | AC090473 | 69664276 | | 78773 | 0 | 70804 | 149577 |
S/G/Y/R/B/O |
NT_024654 | AC090751 | 69825862 | 3 |   |   | AC090540 | 69664276 | | 49016 | 2088 | 57551 | 108655 |
S/G/Y/R/B/O |
NT_024654 | AC015798 | 69967355 | 3 | chr15 | NT_024654 | AC016343 | 70132621 | 3 | 0 | 0 | 66175 | 66175 |
S/G/Y/R/B/O |
NT_024654 | AC016343 | 70132621 | 3 | chr15 | NT_024654 | AC051643 | 70243680 | 2 | 53602 | 0 | 0 | 53602 |
S/G/Y/R/B/O |
NT_024654 | AC016343 | 70132621 | 3 |   |   | AC090178 | 70243680 | | 41273 | 0 | 26809 | 68082 |
S/G/Y/R/B/O |
NT_024654 | AC051643 | 70243680 | 2 | chr15 | NT_024654 | AC090181 | 70325879 | 2 | 59053 | 0 | 0 | 59053 |
S/G/Y/R/B/O |
NT_024654 | AC051643 | 70243680 | 2 |   |   | AC090177 | 70132621 | | 123441 | 0 | 207 | 123648 |
S/G/Y/R/B/O |
NT_024654 | AC051643 | 70243680 | 2 |   |   | AC090178 | 70132621 | | 34096 | 0 | 0 | 34096 |
S/G/Y/R/B/O |
NT_024654 | AC051643 | 70243680 | 2 |   |   | AC090507 | 70325879 | | 52324 | 0 | 10392 | 62716 |
S/G/Y/R/B/O |
NT_024654 | AC090181 | 70325879 | 2 | chr15 | NT_024654 | AC107883 | 70461072 | 3 | 22626 | 0 | 0 | 22626 |
S/G/Y/R/B/O |
NT_024654 | AC090181 | 70325879 | 2 |   |   | AC090177 | 70243680 | | 88368 | 0 | 207 | 88575 |
S/G/Y/R/B/O |
NT_024654 | AC107883 | 70461072 | 3 | chr15 | NT_024654 | AC087465 | 70488233 | 3 | 16430 | 0 | 0 | 16430 |
S/G/Y/R/B/O |
NT_024654 | AC107883 | 70461072 | 3 |   |   | AC016693 | 70461072 | | 16427 | 0 | 0 | 16427 |
S/G/Y/R/B/O |
NT_024654 | AC087465 | 70488233 | 3 | chr15 | NT_024654 | AC060773 | 70651553 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_024654 | AC087465 | 70488233 | 3 |   |   | AC016693 | 70325879 | | 92091 | 1994 | 25071 | 119156 |
S/G/Y/R/B/O |
NT_024654 | AC060773 | 70651553 | 3 | chr15 | NT_024654 | AC090984 | 70795363 | 3 | 0 | 0 | 87576 | 87576 |
S/G/Y/R/B/O |
NT_024654 | AC060773 | 70651553 | 3 |   |   | AC025242 | 70461072 | | 17109 | 0 | 23737 | 40846 |
S/G/Y/R/B/O |
NT_024654 | AC090984 | 70795363 | 3 | chr15 | NT_024654 | AC046168 | 70898004 | 3 | 29133 | 0 | 0 | 29133 |
S/G/Y/R/B/O |
NT_024654 | AC090984 | 70795363 | 3 |   |   | AC025242 | 70795363 | | 91405 | 0 | 49420 | 140825 |
S/G/Y/R/B/O |
NT_024654 | AC090984 | 70795363 | 3 |   |   | AC068823 | 70651553 | | 29324 | 27195 | 18280 | 74799 |
S/G/Y/R/B/O |
NT_024654 | AC046168 | 70898004 | 3 | chr15 | NT_024654 | AC110607 | 71049355 | 3 | 62967 | 0 | 0 | 62967 |
S/G/Y/R/B/O |
NT_024654 | AC046168 | 70898004 | 3 |   |   | AC025242 | 70651553 | | 26310 | 0 | 0 | 26310 |
S/G/Y/R/B/O |
NT_024654 | AC046168 | 70898004 | 3 |   |   | AC068823 | 70651553 | | 58607 | 8432 | 11398 | 78437 |
S/G/Y/R/B/O |
NT_024654 | AC110607 | 71049355 | 3 | chr15 | NT_024654 | AC105133 | 71136887 | 3 | 9535 | 0 | 0 | 9535 |
S/G/Y/R/B/O |
NT_024654 | AC110607 | 71049355 | 3 |   |   | AC104573 | 70898004 | | 86001 | 1080 | 0 | 87081 |
S/G/Y/R/B/O |
NT_024654 | AC105133 | 71136887 | 3 | chr15 | NT_024654 | AC104758 | 71252406 | 2 | 16518 | 0 | 0 | 16518 |
S/G/Y/R/B/O |
NT_024654 | AC105133 | 71136887 | 3 |   |   | AC104573 | 71136887 | | 98728 | 0 | 1133 | 99861 |
S/G/Y/R/B/O |
NT_024654 | AC105133 | 71136887 | 3 |   |   | AC104579 | 71136887 | | 58356 | 0 | 0 | 58356 |
S/G/Y/R/B/O |
NT_024654 | AC104758 | 71252406 | 2 | chr15 | NT_024654 | AC090260 | 71374805 | 2 | 0 | 0 | 915 | 915 |
S/G/Y/R/B/O |
NT_024654 | AC104758 | 71252406 | 2 |   |   | AC016276 | 853487 | | 78763 | 27351 | 10829 | 116943 |
S/G/Y/R/B/O |
NT_024654 | AC104758 | 71252406 | 2 |   |   | AC016276 | 853487 | | 78763 | 27351 | 10829 | 116943 |
S/G/Y/R/B/O |
NT_024654 | AC104758 | 71252406 | 2 |   |   | AC104579 | 71374805 | | 105723 | 2454 | 7085 | 115262 |
S/G/Y/R/B/O |
NT_024654 | AC104758 | 71252406 | 2 |   |   | AC104579 | 71374805 | | 105723 | 2454 | 7085 | 115262 |
S/G/Y/R/B/O |
NT_024654 | AC090260 | 71374805 | 2 | chr15 | NT_024654 | AC090607 | 71565689 | 3 | 16437 | 0 | 0 | 16437 |
S/G/Y/R/B/O |
NT_024654 | AC090260 | 71374805 | 2 |   |   | AC015557 | 71136887 | | 111731 | 4495 | 7144 | 123370 |
S/G/Y/R/B/O |
NT_024654 | AC090260 | 71374805 | 2 |   |   | AC015557 | 71136887 | | 111731 | 4495 | 7144 | 123370 |
S/G/Y/R/B/O |
NT_024654 | AC090260 | 71374805 | 2 |   |   | AC016276 | 71136887 | | 32129 | 10229 | 3577 | 45935 |
S/G/Y/R/B/O |
NT_024654 | AC090260 | 71374805 | 2 |   |   | AC016276 | 71136887 | | 32129 | 10229 | 3577 | 45935 |
S/G/Y/R/B/O |
NT_024654 | AC090607 | 71565689 | 3 | chr15 | NT_024654 | AC011270 | 71722248 | 3 | 27314 | 0 | 0 | 27314 |
S/G/Y/R/B/O |
NT_024654 | AC090607 | 71565689 | 3 |   |   | AC068554 | 71722248 | | 68844 | 3913 | 46603 | 119360 |
S/G/Y/R/B/O |
NT_024654 | AC090607 | 71565689 | 3 |   |   | AC090813 | 71374805 | | 31367 | 0 | 0 | 31367 |
S/G/Y/R/B/O |
NT_024654 | AC011270 | 71722248 | 3 | chr15 | NT_024654 | AC027228 | 71844696 | 3 | 34886 | 0 | 0 | 34886 |
S/G/Y/R/B/O |
NT_024654 | AC011270 | 71722248 | 3 |   |   | AC068554 | 71844696 | | 33368 | 0 | 17498 | 50866 |
S/G/Y/R/B/O |
NT_024654 | AC011270 | 71722248 | 3 |   |   | AC090813 | 71565689 | | 149643 | 0 | 0 | 149643 |
S/G/Y/R/B/O |
NT_024654 | AC027228 | 71844696 | 3 | chr15 | NT_024654 | AC067863 | 71979090 | 2 | 38129 | 0 | 0 | 38129 |
S/G/Y/R/B/O |
NT_024654 | AC027228 | 71844696 | 3 |   |   | AC090813 | 71979090 | | 32518 | 0 | 6301 | 38819 |
S/G/Y/R/B/O |
NT_024654 | AC067863 | 71979090 | 2 | chr15 | NT_024654 | AC022748 | 72035219 | 3 | 91847 | 0 | 0 | 91847 |
S/G/Y/R/B/O |
NT_024654 | AC067863 | 71979090 | 2 |   |   | AC103975 | 71844696 | | 71410 | 0 | 0 | 71410 |
S/G/Y/R/B/O |
NT_024654 | AC067863 | 71979090 | 2 |   |   | AC103975 | 71844696 | | 71410 | 0 | 0 | 71410 |
S/G/Y/R/B/O |
NT_024654 | AC022748 | 72035219 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_024654 | AC022748 | 72035219 | 3 |   |   | AC103975 | 71979090 | | 143007 | 0 | 0 | 143007 |
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