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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 | chr15 | NT_035354 | AC055876 | 15373313 | 2 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 | chr15 | NT_010346 | AC016033 | 16368142 | 1 | 27664 | 0 | 0 | 27664 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 | chr15 | NT_035354 | AC024930 | 15814991 | 1 | 15042 | 0 | 0 | 15042 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 | chr15 | NT_035354 | AC025138 | 15641818 | 3 | 86374 | 0 | 0 | 86374 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 | chr15 | NT_035354 | AC090411 | 15563811 | 1 | 146001 | 2879 | 2226 | 151106 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC023310 | 16368142 | | 160003 | 0 | 0 | 160003 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC131280 | 16057084 | | 146139 | 0 | 0 | 146139 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC131280 | 16057084 | | 146139 | 0 | 0 | 146139 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC131290 | 16057084 | | 12309 | 0 | 0 | 12309 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC131290 | 16057084 | | 12309 | 0 | 0 | 12309 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC131291 | 16057084 | | 36987 | 0 | 0 | 36987 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC131291 | 16057084 | | 36987 | 0 | 0 | 36987 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC132916 | 16057084 | | 35338 | 0 | 0 | 35338 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC132916 | 16057084 | | 35338 | 0 | 0 | 35338 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC134393 | 16057084 | | 44595 | 0 | 43791 | 88386 |
S/G/Y/R/B/O |
NT_035354 | AC100757 | 15201226 | 3 |   |   | AC134393 | 16057084 | | 44595 | 0 | 43791 | 88386 |
S/G/Y/R/B/O |
NT_035354 | AC055876 | 15373313 | 2 | chr15 | NT_035354 | AC090411 | 15563811 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_035354 | AC055876 | 15373313 | 2 | chr15 | NT_035354 | AC025138 | 15641818 | 3 | 49663 | 0 | 0 | 49663 |
S/G/Y/R/B/O |
NT_035354 | AC055876 | 15373313 | 2 | chr15 | NT_035354 | AC025138 | 15641818 | 3 | 49663 | 0 | 0 | 49663 |
S/G/Y/R/B/O |
NT_035354 | AC055876 | 15373313 | 2 |   |   | AC091565 | 25424312 | | 91696 | 0 | 0 | 91696 |
S/G/Y/R/B/O |
NT_035354 | AC055876 | 15373313 | 2 |   |   | AC091565 | 25424312 | | 91696 | 0 | 0 | 91696 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 | chr15 | NT_035354 | AC025138 | 15641818 | 3 | 66998 | 2875 | 0 | 69873 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 | chr15 | NT_010346 | AC016033 | 16368142 | 1 | 37770 | 0 | 17974 | 55744 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 | chr15 | NT_035354 | AC024930 | 15814991 | 1 | 11882 | 2522 | 293 | 14697 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 | chr15 | NT_033278 | AC091304 | 21415871 | 3 | 32980 | 0 | 2199 | 35179 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 | chr15 | NT_035354 | AC100757 | 15201226 | 3 | 146001 | 2879 | 2226 | 151106 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 | chr15 | NT_010346 | AC116166 | 16170810 | 3 | 33140 | 0 | 0 | 33140 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC011100 | 25424312 | | 15818 | 0 | 0 | 15818 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC018348 | 16368142 | | 15941 | 2132 | 34829 | 52902 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC023310 | 16368142 | | 132718 | 4385 | 2215 | 139318 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC091565 | 21415871 | | 12064 | 2876 | 0 | 14940 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC100755 | 21415871 | | 14303 | 0 | 0 | 14303 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC100756 | 21415871 | | 14303 | 0 | 0 | 14303 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC121153 | 16170810 | | 15322 | 0 | 9699 | 25021 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC131280 | 16057084 | | 142796 | 0 | 0 | 142796 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC131280 | 16057084 | | 142796 | 0 | 0 | 142796 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC131290 | 16057084 | | 12032 | 1068 | 29708 | 42808 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC131290 | 16057084 | | 12032 | 1068 | 29708 | 42808 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC131291 | 16057084 | | 36006 | 0 | 0 | 36006 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC131291 | 16057084 | | 36006 | 0 | 0 | 36006 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC132916 | 16057084 | | 31969 | 795 | 2200 | 34964 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC132916 | 16057084 | | 31969 | 795 | 2200 | 34964 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC134393 | 16057084 | | 44593 | 0 | 43785 | 88378 |
S/G/Y/R/B/O |
NT_035354 | AC090411 | 15563811 | 1 |   |   | AC134393 | 16057084 | | 44593 | 0 | 43785 | 88378 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_035354 | AC024930 | 15814991 | 1 | 34188 | 5237 | 31463 | 70888 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_010363 | AC009673 | 25153072 | 2 | 12256 | 0 | 0 | 12256 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_010363 | AC009673 | 25153072 | 2 | 12256 | 0 | 0 | 12256 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_010346 | AC016033 | 16368142 | 1 | 29507 | 0 | 10919 | 40426 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_035354 | AC055876 | 15373313 | 2 | 49663 | 0 | 0 | 49663 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_035354 | AC055876 | 15373313 | 2 | 49663 | 0 | 0 | 49663 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_010346 | AC073446 | 16468177 | 3 | 20730 | 0 | 0 | 20730 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_010346 | AC073446 | 16468177 | 3 | 20730 | 0 | 0 | 20730 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_035354 | AC100757 | 15201226 | 3 | 86374 | 0 | 0 | 86374 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 | chr15 | NT_033278 | AC121562 | 21617912 | 2 | 22390 | 0 | 0 | 22390 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC023310 | 16368142 | | 76287 | 0 | 0 | 76287 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC100755 | 15563811 | | 36876 | 0 | 0 | 36876 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC100756 | 15563811 | | 36876 | 0 | 0 | 36876 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC100760 | 15201226 | | 76043 | 0 | 0 | 76043 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC109338 | 15201226 | | 12282 | 0 | 0 | 12282 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC109338 | 15201226 | | 12282 | 0 | 0 | 12282 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC131290 | 75844333 | | 12307 | 0 | 54189 | 66496 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC131290 | 75844333 | | 12307 | 0 | 54189 | 66496 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC131291 | 75844333 | | 22935 | 0 | 0 | 22935 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC131291 | 75844333 | | 22935 | 0 | 0 | 22935 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC132916 | 75844333 | | 39889 | 0 | 0 | 39889 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC132916 | 75844333 | | 39889 | 0 | 0 | 39889 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC134393 | 75844333 | | 10772 | 0 | 0 | 10772 |
S/G/Y/R/B/O |
NT_035354 | AC025138 | 15641818 | 3 |   |   | AC134393 | 75844333 | | 10772 | 0 | 0 | 10772 |
S/G/Y/R/B/O |
NT_035354 | AC024930 | 15814991 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_035354 | AC024930 | 15814991 | 1 | chr15 | NT_035354 | AC090411 | 15563811 | 1 | 11882 | 2522 | 293 | 14697 |
S/G/Y/R/B/O |
NT_035354 | AC024930 | 15814991 | 1 | chr15 | NT_035354 | AC100757 | 15201226 | 3 | 15042 | 0 | 0 | 15042 |
S/G/Y/R/B/O |
NT_035354 | AC024930 | 15814991 | 1 |   |   | AC091565 | 23663516 | | 87936 | 5244 | 47441 | 140621 |
S/G/Y/R/B/O |
NT_035354 | AC024930 | 15814991 | 1 |   |   | AC131290 | 25511618 | | 11955 | 1599 | 0 | 13554 |
S/G/Y/R/B/O |
NT_035354 | AC024930 | 15814991 | 1 |   |   | AC131290 | 25511618 | | 11955 | 1599 | 0 | 13554 |
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