Chromosome 15 - Clone Overlaps

Chromosome 15 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_010362	NT_037852	NT_033275	NT_035354	NT_010346	NT_026446	NT_024683	NT_010280
NT_033278	NT_010363	NT_037853	NT_030828	NT_010194	NT_037854	NT_037855	NT_010265
NT_024654	NT_037856	NT_010356	NT_019601	NT_024670	NT_033276	NT_033277	NT_037857
NT_010274	NT_037858	NT_037859	NT_035324	NT_035325

NT_010356

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_010356	AC011944	72309598	3	chr15	NT_010356	AC104231	72475907	3	0	0	1814	1814
S/G/Y/R/B/O	NT_010356	AC011944	72309598	3			AC015970	65965319		61824	4466	0	66290
S/G/Y/R/B/O	NT_010356	AC011944	72309598	3			AC103975	65965319		26921	0	0	26921
S/G/Y/R/B/O	NT_010356	AC104231	72475907	3	chr15	NT_010356	AC069082	72512448	3	42644	0	0	42644
S/G/Y/R/B/O	NT_010356	AC104231	72475907	3			AC015970	72309598		57057	0	12870	69927
S/G/Y/R/B/O	NT_010356	AC104231	72475907	3			AC015970	72309598		57057	0	12870	69927
S/G/Y/R/B/O	NT_010356	AC069082	72512448	3	chr15	NT_010356	AC011797	72675981	3	64201	0	0	64201
S/G/Y/R/B/O	NT_010356	AC069082	72512448	3			AC015970	72675981		31661	0	0	31661
S/G/Y/R/B/O	NT_010356	AC011797	72675981	3	chr15	NT_010356	AC027811	72770168	3	68661	0	0	68661
S/G/Y/R/B/O	NT_010356	AC027811	72770168	3	chr15	NT_010356	AC105231	72877167	3	0	0	0	0
S/G/Y/R/B/O	NT_010356	AC105231	72877167	3	chr15	NT_010356	AC023968	72984127	3	22709	0	0	22709
S/G/Y/R/B/O	NT_010356	AC105231	72877167	3			AL356482	72984127		75898	0	0	75898
S/G/Y/R/B/O	NT_010356	AC023968	72984127	3	chr15	NT_010356	AC026826	73157713	3	0	0	0	0
S/G/Y/R/B/O	NT_010356	AC023968	72984127	3			AC073279	72984127		64360	0	0	64360
S/G/Y/R/B/O	NT_010356	AC023968	72984127	3			AL356482	72877167		10147	0	0	10147
S/G/Y/R/B/O	NT_010356	AC026826	73157713	3	chr15	NT_010356	AC021483	73245127	3	0	0	86494	86494
S/G/Y/R/B/O	NT_010356	AC026826	73157713	3			AC073279	73245127		94972	1976	12172	109120
S/G/Y/R/B/O	NT_010356	AC021483	73245127	3	chr15	NT_010356	AC015871	73321077	3	21952	0	0	21952
S/G/Y/R/B/O	NT_010356	AC021483	73245127	3			AC073279	73157713		53146	1975	21718	76839
S/G/Y/R/B/O	NT_010356	AC021483	73245127	3			AC090501	73157713		54940	0	6631	61571
S/G/Y/R/B/O	NT_010356	AC015871	73321077	3	chr15	NT_010356	AC092701	73450253	3	0	0	0	0
S/G/Y/R/B/O	NT_010356	AC015871	73321077	3			AC010672	73157713		102953	0	3436	106389
S/G/Y/R/B/O	NT_010356	AC015871	73321077	3			AC069320	73245127		19550	1666	0	21216
S/G/Y/R/B/O	NT_010356	AC015871	73321077	3			AC090270	73245127		49718	2658	12602	64978
S/G/Y/R/B/O	NT_010356	AC015871	73321077	3			AC090501	73245127		81238	2612	31911	115761
S/G/Y/R/B/O	NT_010356	AC092701	73450253	3	chr15	NT_010356	AC087761	73570285	3	0	0	24549	24549
S/G/Y/R/B/O	NT_010356	AC092701	73450253	3			AC069320	73245127		70343	6591	11984	88918
S/G/Y/R/B/O	NT_010356	AC092701	73450253	3			AC090270	73570285		37680	0	15267	52947
S/G/Y/R/B/O	NT_010356	AC087761	73570285	3	chr15	NT_010356	AC012337	73724025	3	0	0	128168	128168
S/G/Y/R/B/O	NT_010356	AC012337	73724025	3	chr15	NT_010356	AC016705	73767343	3	33871	0	0	33871
S/G/Y/R/B/O	NT_010356	AC016705	73767343	3	chr15	NT_010356	AC108451	73911436	3	53838	0	0	53838
S/G/Y/R/B/O	NT_010356	AC016705	73767343	3			AC027478	73724025		24710	27893	20673	73276
S/G/Y/R/B/O	NT_010356	AC108451	73911436	3	chr15	NT_010356	AC108450	73980423	3	75780	0	0	75780
S/G/Y/R/B/O	NT_010356	AC108450	73980423	3	chr15	NT_010356	AC023302	74127366	3	0	0	14245	14245
S/G/Y/R/B/O	NT_010356	AC023302	74127366	3	chr15	NT_010356	AC027808	74264946	3	67258	0	0	67258
S/G/Y/R/B/O	NT_010356	AC027808	74264946	3	chr15	NT_010356	AC068870	74419622	3	26542	0	0	26542
S/G/Y/R/B/O	NT_010356	AC068870	74419622	3	chr15	NT_010356	AC036196	74517476	3	0	0	0	0
S/G/Y/R/B/O	NT_010356	AC036196	74517476	3	chr15	NT_010356	AC103858	74682819	3	0	0	0	0
S/G/Y/R/B/O	NT_010356	AC103858	74682819	3	chr15	NT_010356	AC109809	74829180	3	67372	0	0	67372
S/G/Y/R/B/O	NT_010356	AC109809	74829180	3	chr15	NT_010356	AC060809	74878263	3	3726	0	0	3726
S/G/Y/R/B/O	NT_010356	AC060809	74878263	3	chr15	NT_010356	AC023034	75046659	3	109304	0	0	109304
S/G/Y/R/B/O	NT_010356	AC023034	75046659	3	chr15	NT_010356	AC104041	75127036	3	0	0	55159	55159
S/G/Y/R/B/O	NT_010356	AC023034	75046659	3			AC058811	74829180		22202	4086	3917	30205
S/G/Y/R/B/O	NT_010356	AC104041	75127036	3	chr15	NT_010356	AC103976	75259986	3	61093	0	0	61093
S/G/Y/R/B/O	NT_010356	AC104041	75127036	3			AC058811	75046659		33711	6185	16697	56593
S/G/Y/R/B/O	NT_010356	AC103976	75259986	3	chr15	NT_010356	AC025219	75381581	3	99559	0	0	99559
S/G/Y/R/B/O	NT_010356	AC103976	75259986	3			AC058811	75381581		13007	2105	1108	16220
S/G/Y/R/B/O	NT_010356	AC025219	75381581	3	chr15	NT_010356	AC026956	75392486	3	33779	0	0	33779
S/G/Y/R/B/O	NT_010356	AC026956	75392486	3	chr15	NT_010356	AC037480	75588404	1	60709	0	1463	62172
S/G/Y/R/B/O	NT_010356	AC026956	75392486	3	chr15	NT_010356	AC026624	75608006	1	14222	0	0	14222
S/G/Y/R/B/O	NT_010356	AC037480	75588404	1	chr15	NT_010356	AC026624	75608006	1	12558	2165	0	14723
S/G/Y/R/B/O	NT_010356	AC026624	75608006	1	chr15	NT_010356	AC108000	75675875	3	0	0	1414	1414
S/G/Y/R/B/O	NT_010356	AC026624	75608006	1	chr15	NT_010356	AC026956	75392486	3	14222	0	0	14222
S/G/Y/R/B/O	NT_010356	AC108000	75675875	3	chr15	NT_010356	AC126339	75843562	2	0	0	546	546
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2	chr15	NT_010356	AC127482	75844333	1	65283	1370	24415	91068
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2	chr15	NT_019601	AC005630	78329306	3	62719	0	36787	99506
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2	chr15	NT_010356	AC010724	76023590	3	79308	0	0	79308
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2	chr15	NT_019601	AC010725	77900137	3	79356	0	31111	110467
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2	chr15	NT_010356	AC011295	75874892	3	70495	0	546	71041
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2	chr15	NT_010356	AC110291	76126622	3	60504	0	0	60504
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2			AC012064	75874892		33220	0	0	33220
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2			AC073891	78214951		41425	1934	26978	70337
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2			AC126605	1640981		67373	0	539	67912
S/G/Y/R/B/O	NT_010356	AC126339	75843562	2			AC136704	75844333		24312	0	43322	67634
S/G/Y/R/B/O	NT_010356	AC127482	75844333	1	chr15	NT_010356	AC011295	75874892	3	88651	0	34219	122870
S/G/Y/R/B/O	NT_010356	AC127482	75844333	1	chr15	NT_019601	AC005630	78329306	3	25383	2484	83264	111131
S/G/Y/R/B/O	NT_010356	AC127482	75844333	1	chr15	NT_010356	AC010724	76023590	3	97084	0	31983	129067
S/G/Y/R/B/O	NT_010356	AC127482	75844333	1	chr15	NT_019601	AC010725	77900137	3	25372	0	101365	126737
S/G/Y/R/B/O	NT_010356	AC127482	75844333	1	chr15	NT_010356	AC110291	76126622	3	45879	1015	19293	66187
S/G/Y/R/B/O	NT_010356	AC127482	75844333	1			AC126605	75843562		53137	1894	19316	74347
S/G/Y/R/B/O	NT_010356	AC127482	75844333	1			AC136704	75843562		11948	0	59067	71015
S/G/Y/R/B/O	NT_010356	AC011295	75874892	3	chr15	NT_010356	AC010724	76023590	3	20167	0	0	20167
S/G/Y/R/B/O	NT_010356	AC011295	75874892	3	chr15	NT_010356	AC110291	76126622	3	51226	0	0	51226
S/G/Y/R/B/O	NT_010356	AC011295	75874892	3	chr15	NT_010356	AC126339	75843562	2	70495	0	546	71041
S/G/Y/R/B/O	NT_010356	AC011295	75874892	3			AC073891	76023590		27158	0	50711	77869
S/G/Y/R/B/O	NT_010356	AC011295	75874892	3			AC126605	75843562		57877	0	0	57877
S/G/Y/R/B/O	NT_010356	AC011295	75874892	3			AC136704	75844333		32707	0	0	32707
S/G/Y/R/B/O	NT_010356	AC010724	76023590	3	chr15	NT_010356	AC110291	76126622	3	103430	0	0	103430
S/G/Y/R/B/O	NT_010356	AC010724	76023590	3	chr15	NT_010356	AC126339	75843562	2	79308	0	0	79308
S/G/Y/R/B/O	NT_010356	AC010724	76023590	3	chr15	NT_010356	AC127482	75844333	1	97084	0	31983	129067
S/G/Y/R/B/O	NT_010356	AC010724	76023590	3			AC068128	75874892		32004	7908	57569	97481
S/G/Y/R/B/O	NT_010356	AC010724	76023590	3			AC073891	75874892		23500	0	43400	66900
S/G/Y/R/B/O	NT_010356	AC010724	76023590	3			AC126605	75843562		109968	0	0	109968
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3	chr15	NT_010356	AC105339	76243920	3	14552	0	0	14552
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3	chr15	NT_010356	AC011295	75874892	3	51226	0	0	51226
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3	chr15	NT_010356	AC126339	75843562	2	60504	0	0	60504
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3	chr15	NT_010356	AC127482	75844333	1	45879	1015	19293	66187
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3			AC011140	76023590		73765	0	5228	78993
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3			AC012064	75874892		50827	0	0	50827
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3			AC068128	75874892		50082	9570	82036	141688
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3			AC073891	75874892		37789	0	21368	59157
S/G/Y/R/B/O	NT_010356	AC110291	76126622	3			AC126605	75843562		161300	0	0	161300
S/G/Y/R/B/O	NT_010356	AC105339	76243920	3	chr15	NT_010356	AC044907	76323275	3	81861	0	0	81861
S/G/Y/R/B/O	NT_010356	AC105339	76243920	3			AC011140	75844333		55596	1550	4042	61188
S/G/Y/R/B/O	NT_010356	AC044907	76323275	3
S/G/Y/R/B/O	NT_010356	AC044907	76323275	3	chr15	NT_019601	AC022558	76544068	3	49279	0	0	49279