Chromosome 15 - Clone Overlaps

Chromosome 15 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_010362	NT_037852	NT_033275	NT_035354	NT_010346	NT_026446	NT_024683	NT_010280
NT_033278	NT_010363	NT_037853	NT_030828	NT_010194	NT_037854	NT_037855	NT_010265
NT_024654	NT_037856	NT_010356	NT_019601	NT_024670	NT_033276	NT_033277	NT_037857
NT_010274	NT_037858	NT_037859	NT_035324	NT_035325

NT_019601

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_019601	AC022558	76544068	3	chr15	NT_019601	AC024270	76730471	3	11300	0	0	11300
S/G/Y/R/B/O	NT_019601	AC022558	76544068	3	chr15	NT_010356	AC044907	76323275	3	49279	0	0	49279
S/G/Y/R/B/O	NT_019601	AC022558	76544068	3			AC018910	76243920		35421	1075	1134	37630
S/G/Y/R/B/O	NT_019601	AC024270	76730471	3	chr15	NT_019601	AC103876	76903283	3	12070	0	0	12070
S/G/Y/R/B/O	NT_019601	AC024270	76730471	3			AC018910	76323275		76725	9525	18110	104360
S/G/Y/R/B/O	NT_019601	AC024270	76730471	3			AC069400	76544068		78147	2004	8341	88492
S/G/Y/R/B/O	NT_019601	AC024270	76730471	3			AC087666	76544068		61460	0	0	61460
S/G/Y/R/B/O	NT_019601	AC103876	76903283	3	chr15	NT_019601	AC040930	77004411	3	21683	0	0	21683
S/G/Y/R/B/O	NT_019601	AC103876	76903283	3			AC073247	77004411		11217	0	1263	12480
S/G/Y/R/B/O	NT_019601	AC040930	77004411	3	chr15	NT_019601	AC025483	77065064	3	30743	0	0	30743
S/G/Y/R/B/O	NT_019601	AC040930	77004411	3			AC024701	77004411		13376	0	2726	16102
S/G/Y/R/B/O	NT_019601	AC040930	77004411	3			AC073247	77065064		32881	0	38977	71858
S/G/Y/R/B/O	NT_019601	AC025483	77065064	3	chr15	NT_019601	AC090083	77245160	3	0	0	0	0
S/G/Y/R/B/O	NT_019601	AC025483	77065064	3			AC024701	76903283		95478	4650	20442	120570
S/G/Y/R/B/O	NT_019601	AC090083	77245160	3	chr15	NT_019601	AC087738	77309713	2	0	0	0	0
S/G/Y/R/B/O	NT_019601	AC090083	77245160	3			AC010673	77004411		30966	0	1360	32326
S/G/Y/R/B/O	NT_019601	AC090083	77245160	3			AC015715	77004411		19181	0	0	19181
S/G/Y/R/B/O	NT_019601	AC087738	77309713	2	chr15	NT_019601	AC116157	77401344	3	0	0	0	0
S/G/Y/R/B/O	NT_019601	AC087738	77309713	2			AC009689	77004411		47705	0	7106	54811
S/G/Y/R/B/O	NT_019601	AC087738	77309713	2			AC010673	77004411		30956	0	20820	51776
S/G/Y/R/B/O	NT_019601	AC087738	77309713	2			AC015715	77004411		103157	2788	0	105945
S/G/Y/R/B/O	NT_019601	AC116157	77401344	3	chr15	NT_019601	AC027807	77606826	3	12170	0	0	12170
S/G/Y/R/B/O	NT_019601	AC116157	77401344	3			AC009689	77004411		38170	7641	35117	80928
S/G/Y/R/B/O	NT_019601	AC116157	77401344	3			AC015715	77004411		44136	2044	0	46180
S/G/Y/R/B/O	NT_019601	AC116157	77401344	3			AC022684	77004411		66130	0	0	66130
S/G/Y/R/B/O	NT_019601	AC027807	77606826	3	chr15	NT_019601	AC103965	77788153	3	17881	0	0	17881
S/G/Y/R/B/O	NT_019601	AC027807	77606826	3			AC022684	77606826		110916	0	0	110916
S/G/Y/R/B/O	NT_019601	AC027807	77606826	3			AC027605	77606826		73210	0	0	73210
S/G/Y/R/B/O	NT_019601	AC027807	77606826	3			AC073419	77606826		64287	7108	29800	101195
S/G/Y/R/B/O	NT_019601	AC103965	77788153	3	chr15	NT_019601	AC010725	77900137	3	0	1548	0	1548
S/G/Y/R/B/O	NT_019601	AC103965	77788153	3			AC073419	77606826		17789	0	0	17789
S/G/Y/R/B/O	NT_019601	AC103965	77788153	3			AC073891	77606826		15065	4051	21456	40572
S/G/Y/R/B/O	NT_019601	AC103965	77788153	3			AC090910	77606826		12556	0	0	12556
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3	chr15	NT_019601	AC115102	78053936	3	14318	0	0	14318
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3	chr15	NT_019601	AC005630	78329306	3	133449	0	0	133449
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3	chr15	NT_019601	AC048382	78214951	3	53755	0	0	53755
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3	chr15	NT_010356	AC126339	75843562	2	79356	0	31111	110467
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3	chr15	NT_010356	AC127482	75844333	1	25372	0	101365	126737
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3			AC073891	78214951		96238	2854	31814	130906
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3			AC090910	78214951		36450	6895	33287	76632
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3			AC116023	78053936		37609	0	0	37609
S/G/Y/R/B/O	NT_019601	AC010725	77900137	3			AC136704	75844333		49431	0	31783	81214
S/G/Y/R/B/O	NT_019601	AC115102	78053936	3	chr15	NT_019601	AC087732	78195401	1	38945	0	89266	128211
S/G/Y/R/B/O	NT_019601	AC115102	78053936	3	chr15	NT_019601	AC005630	78329306	3	17668	0	0	17668
S/G/Y/R/B/O	NT_019601	AC115102	78053936	3	chr15	NT_019601	AC048382	78214951	3	132049	0	0	132049
S/G/Y/R/B/O	NT_019601	AC115102	78053936	3			AC016771	77900137		84893	3778	8100	96771
S/G/Y/R/B/O	NT_019601	AC115102	78053936	3			AC116023	78195401		76315	0	0	76315
S/G/Y/R/B/O	NT_019601	AC087732	78195401	1	chr15	NT_019601	AC048382	78214951	3	23527	0	70813	94340
S/G/Y/R/B/O	NT_019601	AC087732	78195401	1	chr15	NT_019601	AC012291	78495662	3	21795	0	13986	35781
S/G/Y/R/B/O	NT_019601	AC087732	78195401	1			AC010757	78195401		14936	6818	32462	54216
S/G/Y/R/B/O	NT_019601	AC087732	78195401	1			AC016771	78495662		105302	3772	54217	163291
S/G/Y/R/B/O	NT_019601	AC087732	78195401	1			AC116023	78053936		23500	0	15807	39307
S/G/Y/R/B/O	NT_019601	AC048382	78214951	3	chr15	NT_019601	AC005630	78329306	3	56798	0	0	56798
S/G/Y/R/B/O	NT_019601	AC048382	78214951	3	chr15	NT_019601	AC010725	77900137	3	53755	0	0	53755
S/G/Y/R/B/O	NT_019601	AC048382	78214951	3	chr15	NT_019601	AC115102	78053936	3	132049	0	0	132049
S/G/Y/R/B/O	NT_019601	AC048382	78214951	3			AC016771	77900137		84742	3778	8100	96620
S/G/Y/R/B/O	NT_019601	AC048382	78214951	3			AC073891	77900137		13235	1903	4377	19515
S/G/Y/R/B/O	NT_019601	AC048382	78214951	3			AC116023	78053936		99622	0	0	99622
S/G/Y/R/B/O	NT_019601	AC048382	78214951	3			AC136704	75844333		15748	0	27252	43000
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3	chr15	NT_019601	AC012291	78495662	3	0	0	0	0
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3	chr15	NT_019601	AC010725	77900137	3	133449	0	0	133449
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3	chr15	NT_019601	AC115102	78053936	3	17668	0	0	17668
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3	chr15	NT_010356	AC126339	75843562	2	62719	0	36787	99506
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3	chr15	NT_010356	AC127482	75844333	1	25383	2484	83264	111131
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3			AC073891	78214951		70005	2847	28638	101490
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3			AC090910	78214951		15248	4353	37088	56689
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3			AC116023	78053936		41007	0	0	41007
S/G/Y/R/B/O	NT_019601	AC005630	78329306	3			AC136704	75844333		28215	0	48905	77120
S/G/Y/R/B/O	NT_019601	AC012291	78495662	3	chr15	NT_019601	AC103741	78635014	3	0	1406	0	1406
S/G/Y/R/B/O	NT_019601	AC012291	78495662	3	chr15	NT_019601	AC087732	78195401	1	21795	0	13986	35781
S/G/Y/R/B/O	NT_019601	AC012291	78495662	3			AC010757	75844333		135993	4798	0	140791
S/G/Y/R/B/O	NT_019601	AC012291	78495662	3			AC016771	75844333		26354	0	11492	37846
S/G/Y/R/B/O	NT_019601	AC103741	78635014	3	chr15	NT_019601	AC087468	78644872	3	3702	0	0	3702
S/G/Y/R/B/O	NT_019601	AC087468	78644872	3	chr15	NT_019601	AC027078	78813565	3	0	0	42628	42628
S/G/Y/R/B/O	NT_019601	AC087468	78644872	3	chr11	NT_037765	AC131933	364526	1	72812	0	0	72812
S/G/Y/R/B/O	NT_019601	AC087468	78644872	3	chr11	NT_037765	AC131933	364526	1	72812	0	0	72812
S/G/Y/R/B/O	NT_019601	AC087468	78644872	3			AC018732	364526		84727	5044	22952	112723
S/G/Y/R/B/O	NT_019601	AC027078	78813565	3	chr15	NT_019601	AC044860	78927961	3	0	0	0	0
S/G/Y/R/B/O	NT_019601	AC027078	78813565	3	chr11	NT_037765	AC131933	364526	1	68128	0	0	68128
S/G/Y/R/B/O	NT_019601	AC027078	78813565	3	chr11	NT_037765	AC131933	364526	1	68128	0	0	68128
S/G/Y/R/B/O	NT_019601	AC027078	78813565	3			AC018732	364526		36882	0	1684	38566
S/G/Y/R/B/O	NT_019601	AC044860	78927961	3	chr15	NT_019601	AC104046	79089916	3	14652	0	0	14652
S/G/Y/R/B/O	NT_019601	AC044860	78927961	3			AC012064	364526		130413	0	0	130413
S/G/Y/R/B/O	NT_019601	AC044860	78927961	3			AC073891	364526		23625	2848	29055	55528
S/G/Y/R/B/O	NT_019601	AC104046	79089916	3	chr15	NT_019601	AC110592	79194710	3	23544	0	0	23544
S/G/Y/R/B/O	NT_019601	AC104046	79089916	3			AC023140	75844333		64331	5273	16703	86307
S/G/Y/R/B/O	NT_019601	AC110592	79194710	3	chr15	NT_019601	AC087286	79317853	3	22671	0	0	22671
S/G/Y/R/B/O	NT_019601	AC110592	79194710	3			AC022221	79194710		22666	0	0	22666
S/G/Y/R/B/O	NT_019601	AC110592	79194710	3			AC023140	79194710		104154	2407	9256	115817
S/G/Y/R/B/O	NT_019601	AC087286	79317853	3	chr15	NT_019601	AC021739	79454602	1	34086	0	0	34086
S/G/Y/R/B/O	NT_019601	AC087286	79317853	3			AC007897	79089916		80845	2966	14665	98476
S/G/Y/R/B/O	NT_019601	AC087286	79317853	3			AC022221	79454602		152883	5920	23054	181857
S/G/Y/R/B/O	NT_019601	AC087286	79317853	3			AC026840	79454602		73131	0	376	73507
S/G/Y/R/B/O	NT_019601	AC087286	79317853	3			AC068402	79454602		77332	0	0	77332
S/G/Y/R/B/O	NT_019601	AC021739	79454602	1	chr15	NT_019601	AC104229	79557503	2	17958	0	63945	81903
S/G/Y/R/B/O	NT_019601	AC021739	79454602	1			AC007897	79194710		87584	1829	4567	93980
S/G/Y/R/B/O	NT_019601	AC021739	79454602	1			AC022221	79194710		30206	1756	1090	33052
S/G/Y/R/B/O	NT_019601	AC021739	79454602	1			AC026840	79194710		117983	1625	40850	160458
S/G/Y/R/B/O	NT_019601	AC021739	79454602	1			AC068402	79194710		114813	1768	13821	130402
S/G/Y/R/B/O	NT_019601	AC104229	79557503	2
S/G/Y/R/B/O	NT_019601	AC104229	79557503	2			AC025841	79454602		15589	0	0	15589
S/G/Y/R/B/O	NT_019601	AC104229	79557503	2			AC025841	79454602		15589	0	0	15589
S/G/Y/R/B/O	NT_019601	AC104229	79557503	2			AC026840	79454602		27780	550	32603	60933
S/G/Y/R/B/O	NT_019601	AC104229	79557503	2			AC026840	79454602		27780	550	32603	60933
S/G/Y/R/B/O	NT_019601	AC104229	79557503	2			AC068402	79454602		17597	550	0	18147
S/G/Y/R/B/O	NT_019601	AC104229	79557503	2			AC068402	79454602		17597	550	0	18147