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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_025670 | AC016970 | 103205733 | 3 | chr3 | NT_025670 | AC078811 | 103372699 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_025670 | AC078811 | 103372699 | 3 | chr3 | NT_025670 | AC108677 | 103443220 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_025670 | AC078811 | 103372699 | 3 |   |   | AC012275 | 103372699 | | 11889 | 0 | 0 | 11889 |
S/G/Y/R/B/O |
NT_025670 | AC108677 | 103443220 | 3 | chr3 | NT_025670 | AC080009 | 103548872 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025670 | AC108677 | 103443220 | 3 |   |   | AC012275 | 103443220 | | 34031 | 0 | 9132 | 43163 |
S/G/Y/R/B/O |
NT_025670 | AC080009 | 103548872 | 3 | chr3 | NT_025670 | AC091804 | 103710337 | 3 | 0 | 1993 | 0 | 1993 |
S/G/Y/R/B/O |
NT_025670 | AC091804 | 103710337 | 3 | chr3 | NT_025670 | AC091780 | 103811345 | 1 | 17955 | 0 | 11722 | 29677 |
S/G/Y/R/B/O |
NT_025670 | AC091804 | 103710337 | 3 |   |   | AC063930 | 103710337 | | 22785 | 4473 | 16085 | 43343 |
S/G/Y/R/B/O |
NT_025670 | AC091780 | 103811345 | 1 | chr3 | NT_025670 | AC021056 | 103848382 | 3 | 11280 | 0 | 0 | 11280 |
S/G/Y/R/B/O |
NT_025670 | AC091780 | 103811345 | 1 |   |   | AC063930 | 103848382 | | 11572 | 2490 | 15203 | 29265 |
S/G/Y/R/B/O |
NT_025670 | AC021056 | 103848382 | 3 | chr3 | NT_025670 | AC069070 | 103859662 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_025670 | AC021056 | 103848382 | 3 |   |   | AC024147 | 103710337 | | 11273 | 0 | 0 | 11273 |
S/G/Y/R/B/O |
NT_025670 | AC069070 | 103859662 | 3 | chr3 | NT_025670 | AC012154 | 104012486 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_025670 | AC069070 | 103859662 | 3 |   |   | AC024147 | 103848382 | | 67005 | 0 | 33697 | 100702 |
S/G/Y/R/B/O |
NT_025670 | AC012154 | 104012486 | 3 | chr3 | NT_025670 | AC092904 | 104204307 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025670 | AC012154 | 104012486 | 3 | chr15 | NT_026446 | AC020639 | 18535614 | 1 | 14865 | 3249 | 3385 | 21499 |
S/G/Y/R/B/O |
NT_025670 | AC092904 | 104204307 | 3 | chr3 | NT_025670 | AC092913 | 104330948 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_025670 | AC092904 | 104204307 | 3 |   |   | AC026958 | 103859662 | | 23891 | 0 | 72842 | 96733 |
S/G/Y/R/B/O |
NT_025670 | AC092904 | 104204307 | 3 |   |   | AC026967 | 103859662 | | 11388 | 7821 | 1697 | 20906 |
S/G/Y/R/B/O |
NT_025670 | AC092913 | 104330948 | 3 | chr3 | NT_025670 | AC068762 | 104368271 | 3 | 0 | 2004 | 0 | 2004 |
S/G/Y/R/B/O |
NT_025670 | AC068762 | 104368271 | 3 | chr3 | NT_025670 | AC078806 | 104520812 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_025670 | AC068762 | 104368271 | 3 |   |   | AC026967 | 104204307 | | 78131 | 18348 | 11417 | 107896 |
S/G/Y/R/B/O |
NT_025670 | AC068762 | 104368271 | 3 |   |   | AC073356 | 104204307 | | 39866 | 0 | 85812 | 125678 |
S/G/Y/R/B/O |
NT_025670 | AC078806 | 104520812 | 3 | chr3 | NT_025670 | AC133476 | 104659866 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_025670 | AC078806 | 104520812 | 3 |   |   | AC012584 | 104330948 | | 78184 | 0 | 23894 | 102078 |
S/G/Y/R/B/O |
NT_025670 | AC078806 | 104520812 | 3 |   |   | AC130411 | 104368271 | | 54702 | 0 | 838 | 55540 |
S/G/Y/R/B/O |
NT_025670 | AC133476 | 104659866 | 3 | chr3 | NT_025670 | AC023602 | 104723253 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_025670 | AC133476 | 104659866 | 3 |   |   | AC012584 | 104659866 | | 49127 | 0 | 0 | 49127 |
S/G/Y/R/B/O |
NT_025670 | AC133476 | 104659866 | 3 |   |   | AC130411 | 104520812 | | 49121 | 0 | 0 | 49121 |
S/G/Y/R/B/O |
NT_025670 | AC023602 | 104723253 | 3 | chr3 | NT_025670 | AC016138 | 104820212 | 3 | 0 | 0 | 252 | 252 |
S/G/Y/R/B/O |
NT_025670 | AC023602 | 104723253 | 3 |   |   | AC069225 | 104820212 | | 22191 | 0 | 28529 | 50720 |
S/G/Y/R/B/O |
NT_025670 | AC016138 | 104820212 | 3 | chr3 | NT_025670 | AC126185 | 104999640 | 1 | 69875 | 0 | 0 | 69875 |
S/G/Y/R/B/O |
NT_025670 | AC016138 | 104820212 | 3 |   |   | AC015788 | 104659866 | | 69864 | 0 | 0 | 69864 |
S/G/Y/R/B/O |
NT_025670 | AC016138 | 104820212 | 3 |   |   | AC069225 | 104723253 | | 111484 | 0 | 0 | 111484 |
S/G/Y/R/B/O |
NT_025670 | AC126185 | 104999640 | 1 | chr3 | NT_025670 | AC112485 | 105077399 | 3 | 22582 | 0 | 0 | 22582 |
S/G/Y/R/B/O |
NT_025670 | AC126185 | 104999640 | 1 |   |   | AC015788 | 104999640 | | 169308 | 0 | 0 | 169308 |
S/G/Y/R/B/O |
NT_025670 | AC126185 | 104999640 | 1 |   |   | AC027095 | 104820212 | | 13432 | 2485 | 0 | 15917 |
S/G/Y/R/B/O |
NT_025670 | AC112485 | 105077399 | 3 | chr3 | NT_025670 | AC091157 | 105245899 | 3 | 0 | 1844 | 0 | 1844 |
S/G/Y/R/B/O |
NT_025670 | AC112485 | 105077399 | 3 |   |   | AC015788 | 105077399 | | 22580 | 0 | 0 | 22580 |
S/G/Y/R/B/O |
NT_025670 | AC112485 | 105077399 | 3 |   |   | AC027095 | 105077399 | | 81119 | 15583 | 14001 | 110703 |
S/G/Y/R/B/O |
NT_025670 | AC091157 | 105245899 | 3 | chr3 | NT_025670 | AC092906 | 105344049 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_025670 | AC092906 | 105344049 | 3 | chr3 | NT_025670 | AC131237 | 105418502 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_025670 | AC092906 | 105344049 | 3 |   |   | AC016379 | 105077399 | | 43374 | 6069 | 4096 | 53539 |
S/G/Y/R/B/O |
NT_025670 | AC092906 | 105344049 | 3 |   |   | AC078979 | 105077399 | | 43790 | 0 | 0 | 43790 |
S/G/Y/R/B/O |
NT_025670 | AC131237 | 105418502 | 3 | chr3 | NT_025670 | AC079382 | 105485811 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_025670 | AC131237 | 105418502 | 3 |   |   | AC016379 | 105418502 | | 26705 | 13892 | 4125 | 44722 |
S/G/Y/R/B/O |
NT_025670 | AC131237 | 105418502 | 3 |   |   | AC078979 | 105418502 | | 21377 | 0 | 0 | 21377 |
S/G/Y/R/B/O |
NT_025670 | AC079382 | 105485811 | 3 | chr3 | NT_025670 | AC110489 | 105651437 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_025670 | AC110489 | 105651437 | 3 | chr3 | NT_025670 | AC112127 | 105666664 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_025670 | AC112127 | 105666664 | 3 | chr3 | NT_025670 | AC079946 | 105704604 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_025670 | AC079946 | 105704604 | 3 | chr3 | NT_025670 | AC080097 | 105903397 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025670 | AC079946 | 105704604 | 3 |   |   | AC016378 | 105651437 | | 16809 | 0 | 57030 | 73839 |
S/G/Y/R/B/O |
NT_025670 | AC080097 | 105903397 | 3 | chr3 | NT_025670 | AC068776 | 105994686 | 3 | 31027 | 0 | 0 | 31027 |
S/G/Y/R/B/O |
NT_025670 | AC068776 | 105994686 | 3 | chr3 | NT_025670 | AC112650 | 106126105 | 3 | 0 | 0 | 1250 | 1250 |
S/G/Y/R/B/O |
NT_025670 | AC068776 | 105994686 | 3 |   |   | AC068010 | 106232550 | | 32907 | 2517 | 9659 | 45083 |
S/G/Y/R/B/O |
NT_025670 | AC112650 | 106126105 | 3 | chr3 | NT_025670 | AC063927 | 106232550 | 3 | 108174 | 0 | 0 | 108174 |
S/G/Y/R/B/O |
NT_025670 | AC112650 | 106126105 | 3 |   |   | AC068010 | 106232550 | | 60929 | 13925 | 13217 | 88071 |
S/G/Y/R/B/O |
NT_025670 | AC063927 | 106232550 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_025670 | AC063927 | 106232550 | 3 |   |   | AC068010 | 105994686 | | 56923 | 13920 | 12986 | 83829 |
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