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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_005825 | AC124044 | 41462103 | 3 | chr3 | NT_005825 | AC092048 | 41489321 | 3 | 2364 | 0 | 0 | 2364 |
S/G/Y/R/B/O |
NT_005825 | AC092048 | 41489321 | 3 | chr3 | NT_005825 | AC006060 | 41530108 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC006060 | 41530108 | 3 | chr3 | NT_005825 | AC092047 | 41639410 | 3 | 0 | 0 | 25477 | 25477 |
S/G/Y/R/B/O |
NT_005825 | AC006060 | 41530108 | 3 |   |   | AC048329 | 41462103 | | 10101 | 0 | 5682 | 15783 |
S/G/Y/R/B/O |
NT_005825 | AC092047 | 41639410 | 3 | chr3 | NT_005825 | AC006059 | 41834151 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC092047 | 41639410 | 3 |   |   | AC010169 | 41530108 | | 109742 | 0 | 0 | 109742 |
S/G/Y/R/B/O |
NT_005825 | AC092047 | 41639410 | 3 |   |   | AC048329 | 41530108 | | 57575 | 0 | 56952 | 114527 |
S/G/Y/R/B/O |
NT_005825 | AC092047 | 41639410 | 3 |   |   | AC092041 | 53699840 | | 32192 | 0 | 0 | 32192 |
S/G/Y/R/B/O |
NT_005825 | AC006059 | 41834151 | 3 | chr3 | NT_005825 | AC099329 | 41989923 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC006059 | 41834151 | 3 |   |   | AC022064 | 41489321 | | 125732 | 1859 | 2740 | 130331 |
S/G/Y/R/B/O |
NT_005825 | AC099329 | 41989923 | 3 | chr3 | NT_005825 | AC092043 | 42112652 | 3 | 94945 | 0 | 0 | 94945 |
S/G/Y/R/B/O |
NT_005825 | AC099329 | 41989923 | 3 |   |   | AC022064 | 53699840 | | 59843 | 0 | 0 | 59843 |
S/G/Y/R/B/O |
NT_005825 | AC099329 | 41989923 | 3 |   |   | AC092041 | 53699840 | | 28404 | 0 | 0 | 28404 |
S/G/Y/R/B/O |
NT_005825 | AC092043 | 42112652 | 3 | chr3 | NT_005825 | AC092042 | 42193759 | 3 | 11259 | 0 | 0 | 11259 |
S/G/Y/R/B/O |
NT_005825 | AC092043 | 42112652 | 3 |   |   | AC026352 | 42112652 | | 15511 | 0 | 1445 | 16956 |
S/G/Y/R/B/O |
NT_005825 | AC092043 | 42112652 | 3 |   |   | AC069443 | 42112652 | | 47291 | 0 | 8728 | 56019 |
S/G/Y/R/B/O |
NT_005825 | AC092042 | 42193759 | 3 | chr3 | NT_005825 | AC104434 | 42354474 | 3 | 14189 | 0 | 0 | 14189 |
S/G/Y/R/B/O |
NT_005825 | AC092042 | 42193759 | 3 |   |   | AC026352 | 41989923 | | 73400 | 0 | 0 | 73400 |
S/G/Y/R/B/O |
NT_005825 | AC092042 | 42193759 | 3 |   |   | AC069443 | 41989923 | | 140823 | 0 | 993 | 141816 |
S/G/Y/R/B/O |
NT_005825 | AC104434 | 42354474 | 3 | chr3 | NT_005825 | AC104184 | 42497821 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC104184 | 42497821 | 3 | chr3 | NT_005825 | AC097638 | 42640855 | 3 | 58419 | 0 | 0 | 58419 |
S/G/Y/R/B/O |
NT_005825 | AC097638 | 42640855 | 3 | chr3 | NT_005825 | AC135852 | 42752766 | 3 | 5870 | 0 | 0 | 5870 |
S/G/Y/R/B/O |
NT_005825 | AC097638 | 42640855 | 3 |   |   | AC022985 | 42640855 | | 39709 | 0 | 8919 | 48628 |
S/G/Y/R/B/O |
NT_005825 | AC097638 | 42640855 | 3 |   |   | AC024378 | 42640855 | | 64136 | 5127 | 5598 | 74861 |
S/G/Y/R/B/O |
NT_005825 | AC135852 | 42752766 | 3 | chr3 | NT_005825 | AC105903 | 42762652 | 3 | 3031 | 0 | 0 | 3031 |
S/G/Y/R/B/O |
NT_005825 | AC135852 | 42752766 | 3 |   |   | AC022627 | 42752766 | | 18570 | 0 | 0 | 18570 |
S/G/Y/R/B/O |
NT_005825 | AC135852 | 42752766 | 3 |   |   | AC022985 | 42752766 | | 18497 | 0 | 0 | 18497 |
S/G/Y/R/B/O |
NT_005825 | AC135852 | 42752766 | 3 |   |   | AC024378 | 42752766 | | 10610 | 6311 | 348 | 17269 |
S/G/Y/R/B/O |
NT_005825 | AC105903 | 42762652 | 3 | chr3 | NT_005825 | AC006055 | 42949603 | 3 | 28120 | 0 | 0 | 28120 |
S/G/Y/R/B/O |
NT_005825 | AC105903 | 42762652 | 3 |   |   | AC022627 | 42949603 | | 76397 | 4482 | 6982 | 87861 |
S/G/Y/R/B/O |
NT_005825 | AC105903 | 42762652 | 3 |   |   | AC022985 | 42949603 | | 42356 | 0 | 1231 | 43587 |
S/G/Y/R/B/O |
NT_005825 | AC105903 | 42762652 | 3 |   |   | AC024378 | 42949603 | | 47066 | 4414 | 2287 | 53767 |
S/G/Y/R/B/O |
NT_005825 | AC006055 | 42949603 | 3 | chr3 | NT_005825 | AC104851 | 43013312 | 3 | 33426 | 0 | 0 | 33426 |
S/G/Y/R/B/O |
NT_005825 | AC104851 | 43013312 | 3 | chr3 | NT_005825 | AC112210 | 43060721 | 3 | 79137 | 0 | 0 | 79137 |
S/G/Y/R/B/O |
NT_005825 | AC104851 | 43013312 | 3 |   |   | AC073222 | 42949603 | | 19516 | 1086 | 0 | 20602 |
S/G/Y/R/B/O |
NT_005825 | AC104851 | 43013312 | 3 |   |   | AC073222 | 42949603 | | 19516 | 1086 | 0 | 20602 |
S/G/Y/R/B/O |
NT_005825 | AC112210 | 43060721 | 3 | chr3 | NT_005825 | AC006058 | 43207420 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC112210 | 43060721 | 3 |   |   | AC073222 | 43060721 | | 43944 | 2219 | 15536 | 61699 |
S/G/Y/R/B/O |
NT_005825 | AC006058 | 43207420 | 3 | chr3 | NT_005825 | AC107625 | 43346243 | 3 | 0 | 0 | 56554 | 56554 |
S/G/Y/R/B/O |
NT_005825 | AC006058 | 43207420 | 3 |   |   | AC073222 | 43013312 | | 63564 | 6833 | 1369 | 71766 |
S/G/Y/R/B/O |
NT_005825 | AC107625 | 43346243 | 3 | chr3 | NT_005825 | AC104187 | 43486572 | 3 | 0 | 0 | 103986 | 103986 |
S/G/Y/R/B/O |
NT_005825 | AC104187 | 43486572 | 3 | chr3 | NT_005825 | AC134943 | 43568295 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC134943 | 43568295 | 3 | chr3 | NT_005825 | AC099669 | 43664758 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC134943 | 43568295 | 3 |   |   | AC134510 | 43346243 | | 75224 | 0 | 0 | 75224 |
S/G/Y/R/B/O |
NT_005825 | AC134943 | 43568295 | 3 |   |   | AC134510 | 43346243 | | 75224 | 0 | 0 | 75224 |
S/G/Y/R/B/O |
NT_005825 | AC134943 | 43568295 | 3 |   |   | AC134510 | 43346243 | | 75224 | 0 | 0 | 75224 |
S/G/Y/R/B/O |
NT_005825 | AC134943 | 43568295 | 3 |   |   | AC134510 | 43346243 | | 75224 | 0 | 0 | 75224 |
S/G/Y/R/B/O |
NT_005825 | AC099669 | 43664758 | 3 | chr3 | NT_005825 | AC124045 | 43881793 | 3 | 0 | 1760 | 0 | 1760 |
S/G/Y/R/B/O |
NT_005825 | AC099669 | 43664758 | 3 |   |   | AC092046 | 43346243 | | 109395 | 0 | 0 | 109395 |
S/G/Y/R/B/O |
NT_005825 | AC124045 | 43881793 | 3 | chr3 | NT_005825 | AC098649 | 43943133 | 3 | 0 | 1866 | 0 | 1866 |
S/G/Y/R/B/O |
NT_005825 | AC124045 | 43881793 | 3 |   |   | AC092046 | 43881793 | | 61721 | 0 | 0 | 61721 |
S/G/Y/R/B/O |
NT_005825 | AC098649 | 43943133 | 3 | chr3 | NT_005825 | AC104165 | 44147276 | 3 | 19659 | 0 | 0 | 19659 |
S/G/Y/R/B/O |
NT_005825 | AC104165 | 44147276 | 3 | chr3 | NT_005825 | AC105902 | 44328573 | 3 | 95247 | 0 | 0 | 95247 |
S/G/Y/R/B/O |
NT_005825 | AC105902 | 44328573 | 3 | chr3 | NT_005825 | AC010170 | 44396437 | 3 | 50065 | 0 | 0 | 50065 |
S/G/Y/R/B/O |
NT_005825 | AC010170 | 44396437 | 3 | chr3 | NT_005825 | AC006515 | 44520349 | 3 | 100594 | 0 | 0 | 100594 |
S/G/Y/R/B/O |
NT_005825 | AC006515 | 44520349 | 3 | chr3 | NT_005825 | AC092500 | 44643158 | 3 | 122698 | 0 | 0 | 122698 |
S/G/Y/R/B/O |
NT_005825 | AC092500 | 44643158 | 3 | chr3 | NT_005825 | AC099539 | 44702939 | 3 | 0 | 0 | 25299 | 25299 |
S/G/Y/R/B/O |
NT_005825 | AC092500 | 44643158 | 3 |   |   | AJ312684 | 44702939 | | 12075 | 4365 | 12979 | 29419 |
S/G/Y/R/B/O |
NT_005825 | AC099539 | 44702939 | 3 | chr3 | NT_005825 | AJ312686 | 44840021 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC099539 | 44702939 | 3 |   |   | AC012659 | 44702939 | | 81699 | 1639 | 0 | 83338 |
S/G/Y/R/B/O |
NT_005825 | AC099539 | 44702939 | 3 |   |   | AJ132411 | 44643158 | | 66348 | 0 | 4900 | 71248 |
S/G/Y/R/B/O |
NT_005825 | AC099539 | 44702939 | 3 |   |   | AJ312684 | 44643158 | | 32933 | 9098 | 15200 | 57231 |
S/G/Y/R/B/O |
NT_005825 | AJ312686 | 44840021 | 3 | chr3 | NT_005825 | AC098476 | 44877017 | 3 | 6218 | 0 | 0 | 6218 |
S/G/Y/R/B/O |
NT_005825 | AJ312686 | 44840021 | 3 |   |   | AC012659 | 44643158 | | 46615 | 0 | 0 | 46615 |
S/G/Y/R/B/O |
NT_005825 | AJ312686 | 44840021 | 3 |   |   | AJ132411 | 44877017 | | 14022 | 0 | 33253 | 47275 |
S/G/Y/R/B/O |
NT_005825 | AC098476 | 44877017 | 3 | chr3 | NT_005825 | AJ289880 | 44931332 | 3 | 114929 | 0 | 0 | 114929 |
S/G/Y/R/B/O |
NT_005825 | AC098476 | 44877017 | 3 | chr3 | NT_005825 | AC099782 | 45073613 | 3 | 11993 | 0 | 0 | 11993 |
S/G/Y/R/B/O |
NT_005825 | AC098476 | 44877017 | 3 |   |   | AC012659 | 44877017 | | 22019 | 0 | 7591 | 29610 |
S/G/Y/R/B/O |
NT_005825 | AJ289880 | 44931332 | 3 | chr3 | NT_005825 | AC099782 | 45073613 | 3 | 39148 | 0 | 0 | 39148 |
S/G/Y/R/B/O |
NT_005825 | AC099782 | 45073613 | 3 | chr3 | NT_005825 | AC133140 | 45244211 | 3 | 3878 | 0 | 0 | 3878 |
S/G/Y/R/B/O |
NT_005825 | AC099782 | 45073613 | 3 | chr3 | NT_005825 | AC098476 | 44877017 | 3 | 11993 | 0 | 0 | 11993 |
S/G/Y/R/B/O |
NT_005825 | AC099782 | 45073613 | 3 |   |   | AC005669 | 45073613 | | 92765 | 0 | 0 | 92765 |
S/G/Y/R/B/O |
NT_005825 | AC099782 | 45073613 | 3 |   |   | AJ312687 | 44931332 | | 81332 | 10888 | 27648 | 119868 |
S/G/Y/R/B/O |
NT_005825 | AC133140 | 45244211 | 3 | chr3 | NT_005825 | AC104439 | 45295334 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC133140 | 45244211 | 3 |   |   | AJ312687 | 45073613 | | 19638 | 0 | 0 | 19638 |
S/G/Y/R/B/O |
NT_005825 | AC104439 | 45295334 | 3 | chr3 | NT_005825 | AJ312688 | 45480882 | 2 | 40632 | 6276 | 972 | 47880 |
S/G/Y/R/B/O |
NT_005825 | AJ312688 | 45480882 | 2 | chr3 | NT_005825 | U95626 | 45531785 | 3 | 2514 | 1794 | 1064 | 5372 |
S/G/Y/R/B/O |
NT_005825 | U95626 | 45531785 | 3 | chr3 | NT_005825 | AC098613 | 45674853 | 3 | 110861 | 0 | 0 | 110861 |
S/G/Y/R/B/O |
NT_005825 | AC098613 | 45674853 | 3 | chr3 | NT_005825 | AC104304 | 45687976 | 3 | 61158 | 0 | 0 | 61158 |
S/G/Y/R/B/O |
NT_005825 | AC098613 | 45674853 | 3 |   |   | AJ310996 | 45687976 | | 41793 | 4104 | 11384 | 57281 |
S/G/Y/R/B/O |
NT_005825 | AC104304 | 45687976 | 3 | chr3 | NT_005825 | AC134504 | 45886906 | 1 | 9859 | 0 | 3925 | 13784 |
S/G/Y/R/B/O |
NT_005825 | AC104304 | 45687976 | 3 |   |   | AJ310996 | 45886906 | | 81216 | 11424 | 17366 | 110006 |
S/G/Y/R/B/O |
NT_005825 | AC134504 | 45886906 | 1 | chr3 | NT_005825 | AC127430 | 45957021 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC127430 | 45957021 | 1 | chr3 | NT_005825 | AC094020 | 45958181 | 3 | 53463 | 0 | 0 | 53463 |
S/G/Y/R/B/O |
NT_005825 | AC127430 | 45957021 | 1 | chr3 | NT_005825 | AC104447 | 46404576 | 3 | 13645 | 0 | 0 | 13645 |
S/G/Y/R/B/O |
NT_005825 | AC127430 | 45957021 | 1 |   |   | AC021052 | 46152910 | | 15218 | 7405 | 17377 | 40000 |
S/G/Y/R/B/O |
NT_005825 | AC094020 | 45958181 | 3 | chr3 | NT_005825 | AC109583 | 46152910 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC109583 | 46152910 | 3 | chr3 | NT_005825 | AC104447 | 46404576 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005825 | AC104447 | 46404576 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_005825 | AC104447 | 46404576 | 3 | chr3 | NT_005825 | AC127430 | 45957021 | 1 | 13645 | 0 | 0 | 13645 |
S/G/Y/R/B/O |
NT_005825 | AC104447 | 46404576 | 3 |   |   | AC005902 | 45886906 | | 76271 | 0 | 0 | 76271 |
S/G/Y/R/B/O |
NT_005825 | AC104447 | 46404576 | 3 |   |   | AC021052 | 45886906 | | 11753 | 8983 | 10809 | 31545 |
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