Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_005825

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_005825	AC124044	41462103	3	chr3	NT_005825	AC092048	41489321	3	2364	0	0	2364
S/G/Y/R/B/O	NT_005825	AC092048	41489321	3	chr3	NT_005825	AC006060	41530108	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC006060	41530108	3	chr3	NT_005825	AC092047	41639410	3	0	0	25477	25477
S/G/Y/R/B/O	NT_005825	AC006060	41530108	3			AC048329	41462103		10101	0	5682	15783
S/G/Y/R/B/O	NT_005825	AC092047	41639410	3	chr3	NT_005825	AC006059	41834151	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC092047	41639410	3			AC010169	41530108		109742	0	0	109742
S/G/Y/R/B/O	NT_005825	AC092047	41639410	3			AC048329	41530108		57575	0	56952	114527
S/G/Y/R/B/O	NT_005825	AC092047	41639410	3			AC092041	53699840		32192	0	0	32192
S/G/Y/R/B/O	NT_005825	AC006059	41834151	3	chr3	NT_005825	AC099329	41989923	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC006059	41834151	3			AC022064	41489321		125732	1859	2740	130331
S/G/Y/R/B/O	NT_005825	AC099329	41989923	3	chr3	NT_005825	AC092043	42112652	3	94945	0	0	94945
S/G/Y/R/B/O	NT_005825	AC099329	41989923	3			AC022064	53699840		59843	0	0	59843
S/G/Y/R/B/O	NT_005825	AC099329	41989923	3			AC092041	53699840		28404	0	0	28404
S/G/Y/R/B/O	NT_005825	AC092043	42112652	3	chr3	NT_005825	AC092042	42193759	3	11259	0	0	11259
S/G/Y/R/B/O	NT_005825	AC092043	42112652	3			AC026352	42112652		15511	0	1445	16956
S/G/Y/R/B/O	NT_005825	AC092043	42112652	3			AC069443	42112652		47291	0	8728	56019
S/G/Y/R/B/O	NT_005825	AC092042	42193759	3	chr3	NT_005825	AC104434	42354474	3	14189	0	0	14189
S/G/Y/R/B/O	NT_005825	AC092042	42193759	3			AC026352	41989923		73400	0	0	73400
S/G/Y/R/B/O	NT_005825	AC092042	42193759	3			AC069443	41989923		140823	0	993	141816
S/G/Y/R/B/O	NT_005825	AC104434	42354474	3	chr3	NT_005825	AC104184	42497821	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC104184	42497821	3	chr3	NT_005825	AC097638	42640855	3	58419	0	0	58419
S/G/Y/R/B/O	NT_005825	AC097638	42640855	3	chr3	NT_005825	AC135852	42752766	3	5870	0	0	5870
S/G/Y/R/B/O	NT_005825	AC097638	42640855	3			AC022985	42640855		39709	0	8919	48628
S/G/Y/R/B/O	NT_005825	AC097638	42640855	3			AC024378	42640855		64136	5127	5598	74861
S/G/Y/R/B/O	NT_005825	AC135852	42752766	3	chr3	NT_005825	AC105903	42762652	3	3031	0	0	3031
S/G/Y/R/B/O	NT_005825	AC135852	42752766	3			AC022627	42752766		18570	0	0	18570
S/G/Y/R/B/O	NT_005825	AC135852	42752766	3			AC022985	42752766		18497	0	0	18497
S/G/Y/R/B/O	NT_005825	AC135852	42752766	3			AC024378	42752766		10610	6311	348	17269
S/G/Y/R/B/O	NT_005825	AC105903	42762652	3	chr3	NT_005825	AC006055	42949603	3	28120	0	0	28120
S/G/Y/R/B/O	NT_005825	AC105903	42762652	3			AC022627	42949603		76397	4482	6982	87861
S/G/Y/R/B/O	NT_005825	AC105903	42762652	3			AC022985	42949603		42356	0	1231	43587
S/G/Y/R/B/O	NT_005825	AC105903	42762652	3			AC024378	42949603		47066	4414	2287	53767
S/G/Y/R/B/O	NT_005825	AC006055	42949603	3	chr3	NT_005825	AC104851	43013312	3	33426	0	0	33426
S/G/Y/R/B/O	NT_005825	AC104851	43013312	3	chr3	NT_005825	AC112210	43060721	3	79137	0	0	79137
S/G/Y/R/B/O	NT_005825	AC104851	43013312	3			AC073222	42949603		19516	1086	0	20602
S/G/Y/R/B/O	NT_005825	AC104851	43013312	3			AC073222	42949603		19516	1086	0	20602
S/G/Y/R/B/O	NT_005825	AC112210	43060721	3	chr3	NT_005825	AC006058	43207420	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC112210	43060721	3			AC073222	43060721		43944	2219	15536	61699
S/G/Y/R/B/O	NT_005825	AC006058	43207420	3	chr3	NT_005825	AC107625	43346243	3	0	0	56554	56554
S/G/Y/R/B/O	NT_005825	AC006058	43207420	3			AC073222	43013312		63564	6833	1369	71766
S/G/Y/R/B/O	NT_005825	AC107625	43346243	3	chr3	NT_005825	AC104187	43486572	3	0	0	103986	103986
S/G/Y/R/B/O	NT_005825	AC104187	43486572	3	chr3	NT_005825	AC134943	43568295	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC134943	43568295	3	chr3	NT_005825	AC099669	43664758	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC134943	43568295	3			AC134510	43346243		75224	0	0	75224
S/G/Y/R/B/O	NT_005825	AC134943	43568295	3			AC134510	43346243		75224	0	0	75224
S/G/Y/R/B/O	NT_005825	AC134943	43568295	3			AC134510	43346243		75224	0	0	75224
S/G/Y/R/B/O	NT_005825	AC134943	43568295	3			AC134510	43346243		75224	0	0	75224
S/G/Y/R/B/O	NT_005825	AC099669	43664758	3	chr3	NT_005825	AC124045	43881793	3	0	1760	0	1760
S/G/Y/R/B/O	NT_005825	AC099669	43664758	3			AC092046	43346243		109395	0	0	109395
S/G/Y/R/B/O	NT_005825	AC124045	43881793	3	chr3	NT_005825	AC098649	43943133	3	0	1866	0	1866
S/G/Y/R/B/O	NT_005825	AC124045	43881793	3			AC092046	43881793		61721	0	0	61721
S/G/Y/R/B/O	NT_005825	AC098649	43943133	3	chr3	NT_005825	AC104165	44147276	3	19659	0	0	19659
S/G/Y/R/B/O	NT_005825	AC104165	44147276	3	chr3	NT_005825	AC105902	44328573	3	95247	0	0	95247
S/G/Y/R/B/O	NT_005825	AC105902	44328573	3	chr3	NT_005825	AC010170	44396437	3	50065	0	0	50065
S/G/Y/R/B/O	NT_005825	AC010170	44396437	3	chr3	NT_005825	AC006515	44520349	3	100594	0	0	100594
S/G/Y/R/B/O	NT_005825	AC006515	44520349	3	chr3	NT_005825	AC092500	44643158	3	122698	0	0	122698
S/G/Y/R/B/O	NT_005825	AC092500	44643158	3	chr3	NT_005825	AC099539	44702939	3	0	0	25299	25299
S/G/Y/R/B/O	NT_005825	AC092500	44643158	3			AJ312684	44702939		12075	4365	12979	29419
S/G/Y/R/B/O	NT_005825	AC099539	44702939	3	chr3	NT_005825	AJ312686	44840021	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC099539	44702939	3			AC012659	44702939		81699	1639	0	83338
S/G/Y/R/B/O	NT_005825	AC099539	44702939	3			AJ132411	44643158		66348	0	4900	71248
S/G/Y/R/B/O	NT_005825	AC099539	44702939	3			AJ312684	44643158		32933	9098	15200	57231
S/G/Y/R/B/O	NT_005825	AJ312686	44840021	3	chr3	NT_005825	AC098476	44877017	3	6218	0	0	6218
S/G/Y/R/B/O	NT_005825	AJ312686	44840021	3			AC012659	44643158		46615	0	0	46615
S/G/Y/R/B/O	NT_005825	AJ312686	44840021	3			AJ132411	44877017		14022	0	33253	47275
S/G/Y/R/B/O	NT_005825	AC098476	44877017	3	chr3	NT_005825	AJ289880	44931332	3	114929	0	0	114929
S/G/Y/R/B/O	NT_005825	AC098476	44877017	3	chr3	NT_005825	AC099782	45073613	3	11993	0	0	11993
S/G/Y/R/B/O	NT_005825	AC098476	44877017	3			AC012659	44877017		22019	0	7591	29610
S/G/Y/R/B/O	NT_005825	AJ289880	44931332	3	chr3	NT_005825	AC099782	45073613	3	39148	0	0	39148
S/G/Y/R/B/O	NT_005825	AC099782	45073613	3	chr3	NT_005825	AC133140	45244211	3	3878	0	0	3878
S/G/Y/R/B/O	NT_005825	AC099782	45073613	3	chr3	NT_005825	AC098476	44877017	3	11993	0	0	11993
S/G/Y/R/B/O	NT_005825	AC099782	45073613	3			AC005669	45073613		92765	0	0	92765
S/G/Y/R/B/O	NT_005825	AC099782	45073613	3			AJ312687	44931332		81332	10888	27648	119868
S/G/Y/R/B/O	NT_005825	AC133140	45244211	3	chr3	NT_005825	AC104439	45295334	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC133140	45244211	3			AJ312687	45073613		19638	0	0	19638
S/G/Y/R/B/O	NT_005825	AC104439	45295334	3	chr3	NT_005825	AJ312688	45480882	2	40632	6276	972	47880
S/G/Y/R/B/O	NT_005825	AJ312688	45480882	2	chr3	NT_005825	U95626	45531785	3	2514	1794	1064	5372
S/G/Y/R/B/O	NT_005825	U95626	45531785	3	chr3	NT_005825	AC098613	45674853	3	110861	0	0	110861
S/G/Y/R/B/O	NT_005825	AC098613	45674853	3	chr3	NT_005825	AC104304	45687976	3	61158	0	0	61158
S/G/Y/R/B/O	NT_005825	AC098613	45674853	3			AJ310996	45687976		41793	4104	11384	57281
S/G/Y/R/B/O	NT_005825	AC104304	45687976	3	chr3	NT_005825	AC134504	45886906	1	9859	0	3925	13784
S/G/Y/R/B/O	NT_005825	AC104304	45687976	3			AJ310996	45886906		81216	11424	17366	110006
S/G/Y/R/B/O	NT_005825	AC134504	45886906	1	chr3	NT_005825	AC127430	45957021	1	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC127430	45957021	1	chr3	NT_005825	AC094020	45958181	3	53463	0	0	53463
S/G/Y/R/B/O	NT_005825	AC127430	45957021	1	chr3	NT_005825	AC104447	46404576	3	13645	0	0	13645
S/G/Y/R/B/O	NT_005825	AC127430	45957021	1			AC021052	46152910		15218	7405	17377	40000
S/G/Y/R/B/O	NT_005825	AC094020	45958181	3	chr3	NT_005825	AC109583	46152910	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC109583	46152910	3	chr3	NT_005825	AC104447	46404576	3	0	0	0	0
S/G/Y/R/B/O	NT_005825	AC104447	46404576	3
S/G/Y/R/B/O	NT_005825	AC104447	46404576	3	chr3	NT_005825	AC127430	45957021	1	13645	0	0	13645
S/G/Y/R/B/O	NT_005825	AC104447	46404576	3			AC005902	45886906		76271	0	0	76271
S/G/Y/R/B/O	NT_005825	AC104447	46404576	3			AC021052	45886906		11753	8983	10809	31545