Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_022517

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_022517	AC116098	18793019	1	chr3	NT_022517	AC015542	18855293	3	5397	0	0	5397
S/G/Y/R/B/O	NT_022517	AC116098	18793019	1			AC025292	18855293		41680	686	0	42366
S/G/Y/R/B/O	NT_022517	AC116098	18793019	1			AC080134	18855293		16502	2687	0	19189
S/G/Y/R/B/O	NT_022517	AC015542	18855293	3	chr3	NT_022517	AC114337	19010543	1	30148	0	0	30148
S/G/Y/R/B/O	NT_022517	AC015542	18855293	3			AC080134	18855293		53210	2691	41798	97699
S/G/Y/R/B/O	NT_022517	AC114337	19010543	1	chr3	NT_022517	AC061958	19058471	3	26564	0	0	26564
S/G/Y/R/B/O	NT_022517	AC114337	19010543	1			AC080134	19058471		16782	963	8017	25762
S/G/Y/R/B/O	NT_022517	AC061958	19058471	3	chr3	NT_022517	AC134051	19236188	1	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC134051	19236188	1	chr3	NT_022517	AC134505	19294801	1	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC134051	19236188	1	chr3	NT_022517	AC104182	19387143	3	42557	0	42236	84793
S/G/Y/R/B/O	NT_022517	AC134505	19294801	1	chr3	NT_022517	AC097635	19304789	3	8346	2121	5647	16114
S/G/Y/R/B/O	NT_022517	AC134505	19294801	1			AC022805	19387143		12520	2122	7696	22338
S/G/Y/R/B/O	NT_022517	AC097635	19304789	3	chr3	NT_022517	AC104182	19387143	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC097635	19304789	3			AC022805	19387143		130793	3331	0	134124
S/G/Y/R/B/O	NT_022517	AC097635	19304789	3			AC069207	19387143		27782	4031	0	31813
S/G/Y/R/B/O	NT_022517	AC104182	19387143	3	chr3	NT_022517	AC099057	19588161	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC104182	19387143	3	chr3	NT_022517	AC134051	19236188	1	42557	0	42236	84793
S/G/Y/R/B/O	NT_022517	AC104182	19387143	3			AC022805	19294801		51036	0	0	51036
S/G/Y/R/B/O	NT_022517	AC099057	19588161	3	chr3	NT_022517	AC098972	19752445	3	55267	0	0	55267
S/G/Y/R/B/O	NT_022517	AC099057	19588161	3			AC022805	19294801		17189	0	31461	48650
S/G/Y/R/B/O	NT_022517	AC099057	19588161	3			AC069207	19294801		13821	0	52374	66195
S/G/Y/R/B/O	NT_022517	AC098972	19752445	3	chr3	NT_022517	AC107622	19843171	3	53872	0	0	53872
S/G/Y/R/B/O	NT_022517	AC107622	19843171	3	chr3	NT_022517	AC116096	19947807	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC116096	19947807	3	chr3	NT_022517	AC107621	20064341	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC116096	19947807	3			AC069533	19752445		17667	4193	26319	48179
S/G/Y/R/B/O	NT_022517	AC107621	20064341	3	chr3	NT_022517	AC104835	20191480	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC107621	20064341	3			AC069533	19752445		29200	1945	7996	39141
S/G/Y/R/B/O	NT_022517	AC104835	20191480	3	chr3	NT_022517	AC099055	20377042	3	0	779	0	779
S/G/Y/R/B/O	NT_022517	AC099055	20377042	3	chr3	NT_022517	AC099753	20532225	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC099753	20532225	3	chr3	NT_022517	AC104441	20699469	3	0	1388	0	1388
S/G/Y/R/B/O	NT_022517	AC104441	20699469	3	chr3	NT_022517	AC104183	20862817	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC104183	20862817	3	chr3	NT_022517	AC009429	21032526	3	5319	0	0	5319
S/G/Y/R/B/O	NT_022517	AC009429	21032526	3	chr3	NT_022517	AC096914	21187615	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC009429	21032526	3			AC012089	21032526		53175	0	0	53175
S/G/Y/R/B/O	NT_022517	AC009429	21032526	3			AC021057	21032526		95310	0	43846	139156
S/G/Y/R/B/O	NT_022517	AC009429	21032526	3			AC022049	21032526		96333	0	7984	104317
S/G/Y/R/B/O	NT_022517	AC009429	21032526	3			AC026674	21032526		42555	3945	16253	62753
S/G/Y/R/B/O	NT_022517	AC096914	21187615	3	chr3	NT_022517	AC092504	21290697	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC096914	21187615	3			AC021057	20862817		50060	0	10349	60409
S/G/Y/R/B/O	NT_022517	AC096914	21187615	3			AC022049	20862817		37434	0	0	37434
S/G/Y/R/B/O	NT_022517	AC092504	21290697	3	chr3	NT_022517	AC063935	21358085	1	7762	0	0	7762
S/G/Y/R/B/O	NT_022517	AC063935	21358085	1	chr3	NT_022517	AC023798	21543576	3	6690	0	31133	37823
S/G/Y/R/B/O	NT_022517	AC063935	21358085	1	chr3	NT_034563	AC058333	169521080	3	16195	11282	3219	30696
S/G/Y/R/B/O	NT_022517	AC063935	21358085	1	chr3	NT_022517	AC096918	21678958	3	16169	0	0	16169
S/G/Y/R/B/O	NT_022517	AC063935	21358085	1			AC022500	21358085		30758	0	2721	33479
S/G/Y/R/B/O	NT_022517	AC063935	21358085	1			AC026080	21543576		16893	9219	7910	34022
S/G/Y/R/B/O	NT_022517	AC063935	21358085	1			AC055759	21543576		68665	17563	53141	139369
S/G/Y/R/B/O	NT_022517	AC023798	21543576	3	chr3	NT_022517	AC096918	21678958	3	78455	0	0	78455
S/G/Y/R/B/O	NT_022517	AC096918	21678958	3	chr3	NT_022517	AC092505	21770327	3	10457	0	0	10457
S/G/Y/R/B/O	NT_022517	AC096918	21678958	3	chr3	NT_022517	AC063935	21358085	1	16169	0	0	16169
S/G/Y/R/B/O	NT_022517	AC096918	21678958	3			AC016840	21678958		32028	8748	10327	51103
S/G/Y/R/B/O	NT_022517	AC096918	21678958	3			AC055759	21543576		16198	0	0	16198
S/G/Y/R/B/O	NT_022517	AC092505	21770327	3	chr3	NT_022517	AC098974	21938847	3	22529	0	0	22529
S/G/Y/R/B/O	NT_022517	AC092505	21770327	3			AC016840	21770327		17847	15745	5687	39279
S/G/Y/R/B/O	NT_022517	AC092505	21770327	3			AC022502	21770327		44333	0	22134	66467
S/G/Y/R/B/O	NT_022517	AC092505	21770327	3			AC024732	21770327		51717	0	0	51717
S/G/Y/R/B/O	NT_022517	AC098974	21938847	3	chr3	NT_022517	AC121253	22102037	1	21122	0	1072	22194
S/G/Y/R/B/O	NT_022517	AC098974	21938847	3			AC024732	21938847		103469	0	0	103469
S/G/Y/R/B/O	NT_022517	AC098974	21938847	3			AC025364	21938847		52152	15870	5461	73483
S/G/Y/R/B/O	NT_022517	AC121253	22102037	1	chr3	NT_022517	AC104740	22194236	3	9522	0	4986	14508
S/G/Y/R/B/O	NT_022517	AC121253	22102037	1			AC025364	22102037		53592	5013	2690	61295
S/G/Y/R/B/O	NT_022517	AC104740	22194236	3	chr3	NT_022517	AC092421	22351037	3	0	0	0	0
S/G/Y/R/B/O	NT_022517	AC104740	22194236	3			AC021377	22194236		15833	0	4730	20563
S/G/Y/R/B/O	NT_022517	AC092421	22351037	3	chr3	NT_022517	AC114477	22470913	3	15176	0	0	15176
S/G/Y/R/B/O	NT_022517	AC092421	22351037	3			AC018542	22102037		15170	0	0	15170
S/G/Y/R/B/O	NT_022517	AC092421	22351037	3			AC021377	22102037		12163	0	5550	17713
S/G/Y/R/B/O	NT_022517	AC092421	22351037	3			AC068813	22102037		26815	0	3422	30237
S/G/Y/R/B/O	NT_022517	AC114477	22470913	3	chr3	NT_022517	AC135253	22634924	3	73026	0	0	73026
S/G/Y/R/B/O	NT_022517	AC114477	22470913	3			AC018542	22470913		155464	0	10294	165758
S/G/Y/R/B/O	NT_022517	AC114477	22470913	3			AC020564	22470913		73019	0	0	73019
S/G/Y/R/B/O	NT_022517	AC114477	22470913	3			AC022501	22470913		83704	1937	14819	100460
S/G/Y/R/B/O	NT_022517	AC114477	22470913	3			AC023506	22470913		23911	2226	0	26137
S/G/Y/R/B/O	NT_022517	AC114477	22470913	3			AC068813	22470913		68261	0	60645	128906
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3	chr3	NT_022517	AC099544	22714385	3	0	1998	0	1998
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC018542	22634924		50938	0	10767	61705
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC018542	22634924		50938	0	10767	61705
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC020564	22634924		116837	0	0	116837
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC020564	22634924		116837	0	0	116837
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC022501	22634924		27384	1937	54381	83702
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC022501	22634924		27384	1937	54381	83702
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC023506	22634924		98343	2226	2966	103535
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC023506	22634924		98343	2226	2966	103535
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC055721	22634924		26229	5689	16567	48485
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC055721	22634924		26229	5689	16567	48485
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC068813	22634924		50653	0	0	50653
S/G/Y/R/B/O	NT_022517	AC135253	22634924	3			AC068813	22634924		50653	0	0	50653
S/G/Y/R/B/O	NT_022517	AC099544	22714385	3	chr3	NT_022517	AC135966	22879153	1	27331	0	29649	56980
S/G/Y/R/B/O	NT_022517	AC099544	22714385	3			AC023506	22470913		25567	2747	45899	74213
S/G/Y/R/B/O	NT_022517	AC099544	22714385	3			AC055721	22470913		12397	0	6222	18619
S/G/Y/R/B/O	NT_022517	AC135966	22879153	1	chr3	NT_022517	AC104741	22915679	3	65479	2347	0	67826
S/G/Y/R/B/O	NT_022517	AC104741	22915679	3	chr3	NT_022517	AC121251	23084112	3	4268	0	0	4268
S/G/Y/R/B/O	NT_022517	AC121251	23084112	3	chr3	NT_022517	AC092038	23114377	3	0	1747	0	1747
S/G/Y/R/B/O	NT_022517	AC092038	23114377	3	chr3	NT_022517	AC116992	23283577	3	104258	0	0	104258
S/G/Y/R/B/O	NT_022517	AC116992	23283577	3	chr3	NT_022517	AC113932	23383481	3	86357	0	0	86357
S/G/Y/R/B/O	NT_022517	AC113932	23383481	3	chr3	NT_022517	AC020626	23417614	3	73705	0	0	73705
S/G/Y/R/B/O	NT_022517	AC020626	23417614	3	chr3	NT_022517	AC124914	23587960	3	9101	0	0	9101
S/G/Y/R/B/O	NT_022517	AC020626	23417614	3			AC079840	23283577		55891	2487	16334	74712
S/G/Y/R/B/O	NT_022517	AC124914	23587960	3	chr3	NT_022517	AC098971	23699400	3	67123	0	0	67123
S/G/Y/R/B/O	NT_022517	AC124914	23587960	3			AC079840	23417614		26548	971	2389	29908
S/G/Y/R/B/O	NT_022517	AC098971	23699400	3	chr3	NT_022517	AC093927	23874809	3	34150	0	0	34150
S/G/Y/R/B/O	NT_022517	AC093927	23874809	3	chr3	NT_022517	AC099054	24023791	3	117061	0	0	117061
S/G/Y/R/B/O	NT_022517	AC093927	23874809	3			AC068890	23587960		91062	8479	13342	112883
S/G/Y/R/B/O	NT_022517	AC099054	24023791	3	chr3	NT_022517	AC112217	24108046	3	61680	0	0	61680
S/G/Y/R/B/O	NT_022517	AC099054	24023791	3			AC068890	161601954		66650	8492	13156	88298
S/G/Y/R/B/O	NT_022517	AC112217	24108046	3	chr3	NT_022517	AC012087	24202887	3	54371	0	0	54371
S/G/Y/R/B/O	NT_022517	AC012087	24202887	3	chr3	NT_022517	AC103585	24343063	3	7972	0	0	7972
S/G/Y/R/B/O	NT_022517	AC012087	24202887	3			AC093574	24023791		90921	0	0	90921
S/G/Y/R/B/O	NT_022517	AC103585	24343063	3	chr3	NT_022517	AC133680	24462194	3	57493	0	0	57493
S/G/Y/R/B/O	NT_022517	AC103585	24343063	3	chr12	NT_009455	AC136467	132892499	1	31944	2067	0	34011
S/G/Y/R/B/O	NT_022517	AC103585	24343063	3			AC093574	24202887		69030	0	0	69030
S/G/Y/R/B/O	NT_022517	AC133680	24462194	3	chr3	NT_022517	AC105900	24592564	3	49950	0	0	49950
S/G/Y/R/B/O	NT_022517	AC133680	24462194	3	chr12	NT_009455	AC136467	132892499	1	75095	2067	16420	93582
S/G/Y/R/B/O	NT_022517	AC133680	24462194	3			AC026673	132892499		26935	0	0	26935
S/G/Y/R/B/O	NT_022517	AC133680	24462194	3			AC026673	132892499		26935	0	0	26935
S/G/Y/R/B/O	NT_022517	AC133680	24462194	3			AC116097	24690989		13629	2148	375	16152
S/G/Y/R/B/O	NT_022517	AC105900	24592564	3	chr3	NT_022517	AC110418	24690989	3	100427	0	0	100427
S/G/Y/R/B/O	NT_022517	AC105900	24592564	3	chr12	NT_009455	AC136467	132892499	1	45808	1645	29615	77068
S/G/Y/R/B/O	NT_022517	AC105900	24592564	3			AC116097	24690989		66464	2148	0	68612
S/G/Y/R/B/O	NT_022517	AC110418	24690989	3	chr3	NT_022517	AC092422	24739475	3	2005	0	0	2005
S/G/Y/R/B/O	NT_022517	AC110418	24690989	3			AC116097	24592564		52836	0	63	52899
S/G/Y/R/B/O	NT_022517	AC092422	24739475	3
S/G/Y/R/B/O	NT_022517	AC092422	24739475	3			AC012133	132892499		42413	0	0	42413