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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_022517 | AC116098 | 18793019 | 1 | chr3 | NT_022517 | AC015542 | 18855293 | 3 | 5397 | 0 | 0 | 5397 |
S/G/Y/R/B/O |
NT_022517 | AC116098 | 18793019 | 1 |   |   | AC025292 | 18855293 | | 41680 | 686 | 0 | 42366 |
S/G/Y/R/B/O |
NT_022517 | AC116098 | 18793019 | 1 |   |   | AC080134 | 18855293 | | 16502 | 2687 | 0 | 19189 |
S/G/Y/R/B/O |
NT_022517 | AC015542 | 18855293 | 3 | chr3 | NT_022517 | AC114337 | 19010543 | 1 | 30148 | 0 | 0 | 30148 |
S/G/Y/R/B/O |
NT_022517 | AC015542 | 18855293 | 3 |   |   | AC080134 | 18855293 | | 53210 | 2691 | 41798 | 97699 |
S/G/Y/R/B/O |
NT_022517 | AC114337 | 19010543 | 1 | chr3 | NT_022517 | AC061958 | 19058471 | 3 | 26564 | 0 | 0 | 26564 |
S/G/Y/R/B/O |
NT_022517 | AC114337 | 19010543 | 1 |   |   | AC080134 | 19058471 | | 16782 | 963 | 8017 | 25762 |
S/G/Y/R/B/O |
NT_022517 | AC061958 | 19058471 | 3 | chr3 | NT_022517 | AC134051 | 19236188 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC134051 | 19236188 | 1 | chr3 | NT_022517 | AC134505 | 19294801 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC134051 | 19236188 | 1 | chr3 | NT_022517 | AC104182 | 19387143 | 3 | 42557 | 0 | 42236 | 84793 |
S/G/Y/R/B/O |
NT_022517 | AC134505 | 19294801 | 1 | chr3 | NT_022517 | AC097635 | 19304789 | 3 | 8346 | 2121 | 5647 | 16114 |
S/G/Y/R/B/O |
NT_022517 | AC134505 | 19294801 | 1 |   |   | AC022805 | 19387143 | | 12520 | 2122 | 7696 | 22338 |
S/G/Y/R/B/O |
NT_022517 | AC097635 | 19304789 | 3 | chr3 | NT_022517 | AC104182 | 19387143 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC097635 | 19304789 | 3 |   |   | AC022805 | 19387143 | | 130793 | 3331 | 0 | 134124 |
S/G/Y/R/B/O |
NT_022517 | AC097635 | 19304789 | 3 |   |   | AC069207 | 19387143 | | 27782 | 4031 | 0 | 31813 |
S/G/Y/R/B/O |
NT_022517 | AC104182 | 19387143 | 3 | chr3 | NT_022517 | AC099057 | 19588161 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC104182 | 19387143 | 3 | chr3 | NT_022517 | AC134051 | 19236188 | 1 | 42557 | 0 | 42236 | 84793 |
S/G/Y/R/B/O |
NT_022517 | AC104182 | 19387143 | 3 |   |   | AC022805 | 19294801 | | 51036 | 0 | 0 | 51036 |
S/G/Y/R/B/O |
NT_022517 | AC099057 | 19588161 | 3 | chr3 | NT_022517 | AC098972 | 19752445 | 3 | 55267 | 0 | 0 | 55267 |
S/G/Y/R/B/O |
NT_022517 | AC099057 | 19588161 | 3 |   |   | AC022805 | 19294801 | | 17189 | 0 | 31461 | 48650 |
S/G/Y/R/B/O |
NT_022517 | AC099057 | 19588161 | 3 |   |   | AC069207 | 19294801 | | 13821 | 0 | 52374 | 66195 |
S/G/Y/R/B/O |
NT_022517 | AC098972 | 19752445 | 3 | chr3 | NT_022517 | AC107622 | 19843171 | 3 | 53872 | 0 | 0 | 53872 |
S/G/Y/R/B/O |
NT_022517 | AC107622 | 19843171 | 3 | chr3 | NT_022517 | AC116096 | 19947807 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC116096 | 19947807 | 3 | chr3 | NT_022517 | AC107621 | 20064341 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC116096 | 19947807 | 3 |   |   | AC069533 | 19752445 | | 17667 | 4193 | 26319 | 48179 |
S/G/Y/R/B/O |
NT_022517 | AC107621 | 20064341 | 3 | chr3 | NT_022517 | AC104835 | 20191480 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC107621 | 20064341 | 3 |   |   | AC069533 | 19752445 | | 29200 | 1945 | 7996 | 39141 |
S/G/Y/R/B/O |
NT_022517 | AC104835 | 20191480 | 3 | chr3 | NT_022517 | AC099055 | 20377042 | 3 | 0 | 779 | 0 | 779 |
S/G/Y/R/B/O |
NT_022517 | AC099055 | 20377042 | 3 | chr3 | NT_022517 | AC099753 | 20532225 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC099753 | 20532225 | 3 | chr3 | NT_022517 | AC104441 | 20699469 | 3 | 0 | 1388 | 0 | 1388 |
S/G/Y/R/B/O |
NT_022517 | AC104441 | 20699469 | 3 | chr3 | NT_022517 | AC104183 | 20862817 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC104183 | 20862817 | 3 | chr3 | NT_022517 | AC009429 | 21032526 | 3 | 5319 | 0 | 0 | 5319 |
S/G/Y/R/B/O |
NT_022517 | AC009429 | 21032526 | 3 | chr3 | NT_022517 | AC096914 | 21187615 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC009429 | 21032526 | 3 |   |   | AC012089 | 21032526 | | 53175 | 0 | 0 | 53175 |
S/G/Y/R/B/O |
NT_022517 | AC009429 | 21032526 | 3 |   |   | AC021057 | 21032526 | | 95310 | 0 | 43846 | 139156 |
S/G/Y/R/B/O |
NT_022517 | AC009429 | 21032526 | 3 |   |   | AC022049 | 21032526 | | 96333 | 0 | 7984 | 104317 |
S/G/Y/R/B/O |
NT_022517 | AC009429 | 21032526 | 3 |   |   | AC026674 | 21032526 | | 42555 | 3945 | 16253 | 62753 |
S/G/Y/R/B/O |
NT_022517 | AC096914 | 21187615 | 3 | chr3 | NT_022517 | AC092504 | 21290697 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC096914 | 21187615 | 3 |   |   | AC021057 | 20862817 | | 50060 | 0 | 10349 | 60409 |
S/G/Y/R/B/O |
NT_022517 | AC096914 | 21187615 | 3 |   |   | AC022049 | 20862817 | | 37434 | 0 | 0 | 37434 |
S/G/Y/R/B/O |
NT_022517 | AC092504 | 21290697 | 3 | chr3 | NT_022517 | AC063935 | 21358085 | 1 | 7762 | 0 | 0 | 7762 |
S/G/Y/R/B/O |
NT_022517 | AC063935 | 21358085 | 1 | chr3 | NT_022517 | AC023798 | 21543576 | 3 | 6690 | 0 | 31133 | 37823 |
S/G/Y/R/B/O |
NT_022517 | AC063935 | 21358085 | 1 | chr3 | NT_034563 | AC058333 | 169521080 | 3 | 16195 | 11282 | 3219 | 30696 |
S/G/Y/R/B/O |
NT_022517 | AC063935 | 21358085 | 1 | chr3 | NT_022517 | AC096918 | 21678958 | 3 | 16169 | 0 | 0 | 16169 |
S/G/Y/R/B/O |
NT_022517 | AC063935 | 21358085 | 1 |   |   | AC022500 | 21358085 | | 30758 | 0 | 2721 | 33479 |
S/G/Y/R/B/O |
NT_022517 | AC063935 | 21358085 | 1 |   |   | AC026080 | 21543576 | | 16893 | 9219 | 7910 | 34022 |
S/G/Y/R/B/O |
NT_022517 | AC063935 | 21358085 | 1 |   |   | AC055759 | 21543576 | | 68665 | 17563 | 53141 | 139369 |
S/G/Y/R/B/O |
NT_022517 | AC023798 | 21543576 | 3 | chr3 | NT_022517 | AC096918 | 21678958 | 3 | 78455 | 0 | 0 | 78455 |
S/G/Y/R/B/O |
NT_022517 | AC096918 | 21678958 | 3 | chr3 | NT_022517 | AC092505 | 21770327 | 3 | 10457 | 0 | 0 | 10457 |
S/G/Y/R/B/O |
NT_022517 | AC096918 | 21678958 | 3 | chr3 | NT_022517 | AC063935 | 21358085 | 1 | 16169 | 0 | 0 | 16169 |
S/G/Y/R/B/O |
NT_022517 | AC096918 | 21678958 | 3 |   |   | AC016840 | 21678958 | | 32028 | 8748 | 10327 | 51103 |
S/G/Y/R/B/O |
NT_022517 | AC096918 | 21678958 | 3 |   |   | AC055759 | 21543576 | | 16198 | 0 | 0 | 16198 |
S/G/Y/R/B/O |
NT_022517 | AC092505 | 21770327 | 3 | chr3 | NT_022517 | AC098974 | 21938847 | 3 | 22529 | 0 | 0 | 22529 |
S/G/Y/R/B/O |
NT_022517 | AC092505 | 21770327 | 3 |   |   | AC016840 | 21770327 | | 17847 | 15745 | 5687 | 39279 |
S/G/Y/R/B/O |
NT_022517 | AC092505 | 21770327 | 3 |   |   | AC022502 | 21770327 | | 44333 | 0 | 22134 | 66467 |
S/G/Y/R/B/O |
NT_022517 | AC092505 | 21770327 | 3 |   |   | AC024732 | 21770327 | | 51717 | 0 | 0 | 51717 |
S/G/Y/R/B/O |
NT_022517 | AC098974 | 21938847 | 3 | chr3 | NT_022517 | AC121253 | 22102037 | 1 | 21122 | 0 | 1072 | 22194 |
S/G/Y/R/B/O |
NT_022517 | AC098974 | 21938847 | 3 |   |   | AC024732 | 21938847 | | 103469 | 0 | 0 | 103469 |
S/G/Y/R/B/O |
NT_022517 | AC098974 | 21938847 | 3 |   |   | AC025364 | 21938847 | | 52152 | 15870 | 5461 | 73483 |
S/G/Y/R/B/O |
NT_022517 | AC121253 | 22102037 | 1 | chr3 | NT_022517 | AC104740 | 22194236 | 3 | 9522 | 0 | 4986 | 14508 |
S/G/Y/R/B/O |
NT_022517 | AC121253 | 22102037 | 1 |   |   | AC025364 | 22102037 | | 53592 | 5013 | 2690 | 61295 |
S/G/Y/R/B/O |
NT_022517 | AC104740 | 22194236 | 3 | chr3 | NT_022517 | AC092421 | 22351037 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022517 | AC104740 | 22194236 | 3 |   |   | AC021377 | 22194236 | | 15833 | 0 | 4730 | 20563 |
S/G/Y/R/B/O |
NT_022517 | AC092421 | 22351037 | 3 | chr3 | NT_022517 | AC114477 | 22470913 | 3 | 15176 | 0 | 0 | 15176 |
S/G/Y/R/B/O |
NT_022517 | AC092421 | 22351037 | 3 |   |   | AC018542 | 22102037 | | 15170 | 0 | 0 | 15170 |
S/G/Y/R/B/O |
NT_022517 | AC092421 | 22351037 | 3 |   |   | AC021377 | 22102037 | | 12163 | 0 | 5550 | 17713 |
S/G/Y/R/B/O |
NT_022517 | AC092421 | 22351037 | 3 |   |   | AC068813 | 22102037 | | 26815 | 0 | 3422 | 30237 |
S/G/Y/R/B/O |
NT_022517 | AC114477 | 22470913 | 3 | chr3 | NT_022517 | AC135253 | 22634924 | 3 | 73026 | 0 | 0 | 73026 |
S/G/Y/R/B/O |
NT_022517 | AC114477 | 22470913 | 3 |   |   | AC018542 | 22470913 | | 155464 | 0 | 10294 | 165758 |
S/G/Y/R/B/O |
NT_022517 | AC114477 | 22470913 | 3 |   |   | AC020564 | 22470913 | | 73019 | 0 | 0 | 73019 |
S/G/Y/R/B/O |
NT_022517 | AC114477 | 22470913 | 3 |   |   | AC022501 | 22470913 | | 83704 | 1937 | 14819 | 100460 |
S/G/Y/R/B/O |
NT_022517 | AC114477 | 22470913 | 3 |   |   | AC023506 | 22470913 | | 23911 | 2226 | 0 | 26137 |
S/G/Y/R/B/O |
NT_022517 | AC114477 | 22470913 | 3 |   |   | AC068813 | 22470913 | | 68261 | 0 | 60645 | 128906 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 | chr3 | NT_022517 | AC099544 | 22714385 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC018542 | 22634924 | | 50938 | 0 | 10767 | 61705 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC018542 | 22634924 | | 50938 | 0 | 10767 | 61705 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC020564 | 22634924 | | 116837 | 0 | 0 | 116837 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC020564 | 22634924 | | 116837 | 0 | 0 | 116837 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC022501 | 22634924 | | 27384 | 1937 | 54381 | 83702 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC022501 | 22634924 | | 27384 | 1937 | 54381 | 83702 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC023506 | 22634924 | | 98343 | 2226 | 2966 | 103535 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC023506 | 22634924 | | 98343 | 2226 | 2966 | 103535 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC055721 | 22634924 | | 26229 | 5689 | 16567 | 48485 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC055721 | 22634924 | | 26229 | 5689 | 16567 | 48485 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC068813 | 22634924 | | 50653 | 0 | 0 | 50653 |
S/G/Y/R/B/O |
NT_022517 | AC135253 | 22634924 | 3 |   |   | AC068813 | 22634924 | | 50653 | 0 | 0 | 50653 |
S/G/Y/R/B/O |
NT_022517 | AC099544 | 22714385 | 3 | chr3 | NT_022517 | AC135966 | 22879153 | 1 | 27331 | 0 | 29649 | 56980 |
S/G/Y/R/B/O |
NT_022517 | AC099544 | 22714385 | 3 |   |   | AC023506 | 22470913 | | 25567 | 2747 | 45899 | 74213 |
S/G/Y/R/B/O |
NT_022517 | AC099544 | 22714385 | 3 |   |   | AC055721 | 22470913 | | 12397 | 0 | 6222 | 18619 |
S/G/Y/R/B/O |
NT_022517 | AC135966 | 22879153 | 1 | chr3 | NT_022517 | AC104741 | 22915679 | 3 | 65479 | 2347 | 0 | 67826 |
S/G/Y/R/B/O |
NT_022517 | AC104741 | 22915679 | 3 | chr3 | NT_022517 | AC121251 | 23084112 | 3 | 4268 | 0 | 0 | 4268 |
S/G/Y/R/B/O |
NT_022517 | AC121251 | 23084112 | 3 | chr3 | NT_022517 | AC092038 | 23114377 | 3 | 0 | 1747 | 0 | 1747 |
S/G/Y/R/B/O |
NT_022517 | AC092038 | 23114377 | 3 | chr3 | NT_022517 | AC116992 | 23283577 | 3 | 104258 | 0 | 0 | 104258 |
S/G/Y/R/B/O |
NT_022517 | AC116992 | 23283577 | 3 | chr3 | NT_022517 | AC113932 | 23383481 | 3 | 86357 | 0 | 0 | 86357 |
S/G/Y/R/B/O |
NT_022517 | AC113932 | 23383481 | 3 | chr3 | NT_022517 | AC020626 | 23417614 | 3 | 73705 | 0 | 0 | 73705 |
S/G/Y/R/B/O |
NT_022517 | AC020626 | 23417614 | 3 | chr3 | NT_022517 | AC124914 | 23587960 | 3 | 9101 | 0 | 0 | 9101 |
S/G/Y/R/B/O |
NT_022517 | AC020626 | 23417614 | 3 |   |   | AC079840 | 23283577 | | 55891 | 2487 | 16334 | 74712 |
S/G/Y/R/B/O |
NT_022517 | AC124914 | 23587960 | 3 | chr3 | NT_022517 | AC098971 | 23699400 | 3 | 67123 | 0 | 0 | 67123 |
S/G/Y/R/B/O |
NT_022517 | AC124914 | 23587960 | 3 |   |   | AC079840 | 23417614 | | 26548 | 971 | 2389 | 29908 |
S/G/Y/R/B/O |
NT_022517 | AC098971 | 23699400 | 3 | chr3 | NT_022517 | AC093927 | 23874809 | 3 | 34150 | 0 | 0 | 34150 |
S/G/Y/R/B/O |
NT_022517 | AC093927 | 23874809 | 3 | chr3 | NT_022517 | AC099054 | 24023791 | 3 | 117061 | 0 | 0 | 117061 |
S/G/Y/R/B/O |
NT_022517 | AC093927 | 23874809 | 3 |   |   | AC068890 | 23587960 | | 91062 | 8479 | 13342 | 112883 |
S/G/Y/R/B/O |
NT_022517 | AC099054 | 24023791 | 3 | chr3 | NT_022517 | AC112217 | 24108046 | 3 | 61680 | 0 | 0 | 61680 |
S/G/Y/R/B/O |
NT_022517 | AC099054 | 24023791 | 3 |   |   | AC068890 | 161601954 | | 66650 | 8492 | 13156 | 88298 |
S/G/Y/R/B/O |
NT_022517 | AC112217 | 24108046 | 3 | chr3 | NT_022517 | AC012087 | 24202887 | 3 | 54371 | 0 | 0 | 54371 |
S/G/Y/R/B/O |
NT_022517 | AC012087 | 24202887 | 3 | chr3 | NT_022517 | AC103585 | 24343063 | 3 | 7972 | 0 | 0 | 7972 |
S/G/Y/R/B/O |
NT_022517 | AC012087 | 24202887 | 3 |   |   | AC093574 | 24023791 | | 90921 | 0 | 0 | 90921 |
S/G/Y/R/B/O |
NT_022517 | AC103585 | 24343063 | 3 | chr3 | NT_022517 | AC133680 | 24462194 | 3 | 57493 | 0 | 0 | 57493 |
S/G/Y/R/B/O |
NT_022517 | AC103585 | 24343063 | 3 | chr12 | NT_009455 | AC136467 | 132892499 | 1 | 31944 | 2067 | 0 | 34011 |
S/G/Y/R/B/O |
NT_022517 | AC103585 | 24343063 | 3 |   |   | AC093574 | 24202887 | | 69030 | 0 | 0 | 69030 |
S/G/Y/R/B/O |
NT_022517 | AC133680 | 24462194 | 3 | chr3 | NT_022517 | AC105900 | 24592564 | 3 | 49950 | 0 | 0 | 49950 |
S/G/Y/R/B/O |
NT_022517 | AC133680 | 24462194 | 3 | chr12 | NT_009455 | AC136467 | 132892499 | 1 | 75095 | 2067 | 16420 | 93582 |
S/G/Y/R/B/O |
NT_022517 | AC133680 | 24462194 | 3 |   |   | AC026673 | 132892499 | | 26935 | 0 | 0 | 26935 |
S/G/Y/R/B/O |
NT_022517 | AC133680 | 24462194 | 3 |   |   | AC026673 | 132892499 | | 26935 | 0 | 0 | 26935 |
S/G/Y/R/B/O |
NT_022517 | AC133680 | 24462194 | 3 |   |   | AC116097 | 24690989 | | 13629 | 2148 | 375 | 16152 |
S/G/Y/R/B/O |
NT_022517 | AC105900 | 24592564 | 3 | chr3 | NT_022517 | AC110418 | 24690989 | 3 | 100427 | 0 | 0 | 100427 |
S/G/Y/R/B/O |
NT_022517 | AC105900 | 24592564 | 3 | chr12 | NT_009455 | AC136467 | 132892499 | 1 | 45808 | 1645 | 29615 | 77068 |
S/G/Y/R/B/O |
NT_022517 | AC105900 | 24592564 | 3 |   |   | AC116097 | 24690989 | | 66464 | 2148 | 0 | 68612 |
S/G/Y/R/B/O |
NT_022517 | AC110418 | 24690989 | 3 | chr3 | NT_022517 | AC092422 | 24739475 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_022517 | AC110418 | 24690989 | 3 |   |   | AC116097 | 24592564 | | 52836 | 0 | 63 | 52899 |
S/G/Y/R/B/O |
NT_022517 | AC092422 | 24739475 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_022517 | AC092422 | 24739475 | 3 |   |   | AC012133 | 132892499 | | 42413 | 0 | 0 | 42413 |
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