Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_005526

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_005526	AC012019	70279098	1	chr3	NT_005526	AC096971	70355036	3	95283	1800	0	97083
S/G/Y/R/B/O	NT_005526	AC012019	70279098	1			AC018533	70180557		20378	5604	21850	47832
S/G/Y/R/B/O	NT_005526	AC096971	70355036	3	chr3	NT_005526	AC103586	70512120	3	6769	0	0	6769
S/G/Y/R/B/O	NT_005526	AC096971	70355036	3			AC018533	70279098		26555	1975	17812	46342
S/G/Y/R/B/O	NT_005526	AC096971	70355036	3			AC069298	70279098		44817	0	0	44817
S/G/Y/R/B/O	NT_005526	AC103586	70512120	3	chr3	NT_005526	AC097632	70686769	3	17944	0	0	17944
S/G/Y/R/B/O	NT_005526	AC103586	70512120	3			AC022074	70512120		56197	0	52137	108334
S/G/Y/R/B/O	NT_005526	AC103586	70512120	3			AC069298	70512120		119970	0	0	119970
S/G/Y/R/B/O	NT_005526	AC103586	70512120	3			AC069425	70512120		100476	7141	13010	120627
S/G/Y/R/B/O	NT_005526	AC097632	70686769	3	chr3	NT_005526	AC069204	70800615	1	53612	2462	26352	82426
S/G/Y/R/B/O	NT_005526	AC097632	70686769	3			AC022074	70686769		46771	0	11702	58473
S/G/Y/R/B/O	NT_005526	AC097632	70686769	3			AC069425	70800615		79400	6548	5651	91599
S/G/Y/R/B/O	NT_005526	AC069204	70800615	1	chr3	NT_005526	AC104442	70870266	3	28932	2354	21369	52655
S/G/Y/R/B/O	NT_005526	AC069204	70800615	1			AC069425	70512120		41998	8956	4502	55456
S/G/Y/R/B/O	NT_005526	AC069204	70800615	1			AC079166	70512120		32908	2348	4439	39695
S/G/Y/R/B/O	NT_005526	AC104442	70870266	3	chr3	NT_005526	AC104645	71089493	1	53897	0	0	53897
S/G/Y/R/B/O	NT_005526	AC104442	70870266	3			AC079166	70800615		139337	0	26461	165798
S/G/Y/R/B/O	NT_005526	AC104645	71089493	1	chr3	NT_005526	AC097634	71153572	3	36041	0	0	36041
S/G/Y/R/B/O	NT_005526	AC104645	71089493	1			AC011326	71089493		19791	0	0	19791
S/G/Y/R/B/O	NT_005526	AC104645	71089493	1			AC079166	71089493		18158	0	0	18158
S/G/Y/R/B/O	NT_005526	AC097634	71153572	3	chr3	NT_005526	AC134770	71347125	1	32777	2760	35680	71217
S/G/Y/R/B/O	NT_005526	AC097634	71153572	3			AC011326	70870266		150459	0	21094	171553
S/G/Y/R/B/O	NT_005526	AC097634	71153572	3			AC068990	70870266		82074	0	0	82074
S/G/Y/R/B/O	NT_005526	AC134770	71347125	1	chr3	NT_005526	AC096970	71404545	3	16929	0	0	16929
S/G/Y/R/B/O	NT_005526	AC134770	71347125	1			AC011326	71347125		64767	2750	2965	70482
S/G/Y/R/B/O	NT_005526	AC134770	71347125	1			AC068990	71347125		79323	1554	59976	140853
S/G/Y/R/B/O	NT_005526	AC096970	71404545	3	chr3	NT_005526	AC107623	71575842	3	78452	0	0	78452
S/G/Y/R/B/O	NT_005526	AC096970	71404545	3			AC116352	71575842		34939	1789	32694	69422
S/G/Y/R/B/O	NT_005526	AC107623	71575842	3	chr3	NT_005526	AC105265	71674291	1	56987	0	0	56987
S/G/Y/R/B/O	NT_005526	AC107623	71575842	3			AC105938	71674291		47114	0	0	47114
S/G/Y/R/B/O	NT_005526	AC107623	71575842	3			AC116352	71674291		28892	0	30357	59249
S/G/Y/R/B/O	NT_005526	AC105265	71674291	1	chr3	NT_005526	AC112219	71795421	3	13698	0	0	13698
S/G/Y/R/B/O	NT_005526	AC105265	71674291	1			AC105938	71674291		15039	0	0	15039
S/G/Y/R/B/O	NT_005526	AC112219	71795421	3	chr3	NT_005526	AC134508	71937195	3	0	1999	0	1999
S/G/Y/R/B/O	NT_005526	AC134508	71937195	3	chr3	NT_005526	AC104330	71984508	3	0	2001	0	2001
S/G/Y/R/B/O	NT_005526	AC104330	71984508	3	chr3	NT_005526	AC104435	72162727	3	31320	0	0	31320
S/G/Y/R/B/O	NT_005526	AC104330	71984508	3			AC069212	71795421		75983	0	60961	136944
S/G/Y/R/B/O	NT_005526	AC104435	72162727	3	chr3	NT_005526	AC097369	72328247	3	130717	0	0	130717
S/G/Y/R/B/O	NT_005526	AC097369	72328247	3	chr3	NT_005526	AC134050	72401289	3	0	1476	0	1476
S/G/Y/R/B/O	NT_005526	AC134050	72401289	3	chr3	NT_005526	AC114876	72434546	3	7001	0	0	7001
S/G/Y/R/B/O	NT_005526	AC114876	72434546	3	chr3	NT_005526	AC098481	72606243	3	123789	0	0	123789
S/G/Y/R/B/O	NT_005526	AC114876	72434546	3			AC109997	72606243		104516	0	0	104516
S/G/Y/R/B/O	NT_005526	AC098481	72606243	3	chr3	NT_005526	AC103559	72709590	3	103236	0	0	103236
S/G/Y/R/B/O	NT_005526	AC098481	72606243	3			AC109997	72709590		17377	0	122841	140218
S/G/Y/R/B/O	NT_005526	AC103559	72709590	3	chr3	NT_005526	AC024152	72790441	1	0	0	0	0
S/G/Y/R/B/O	NT_005526	AC103559	72709590	3			AC023771	72434546		70556	2194	11722	84472
S/G/Y/R/B/O	NT_005526	AC103559	72709590	3			AC109997	72606243		17433	0	18374	35807
S/G/Y/R/B/O	NT_005526	AC024152	72790441	1	chr3	NT_005526	AC103560	72883000	3	61207	0	4681	65888
S/G/Y/R/B/O	NT_005526	AC024152	72790441	1			AC023771	72606243		30501	4184	17393	52078
S/G/Y/R/B/O	NT_005526	AC103560	72883000	3	chr3	NT_005526	AC024102	73069241	3	73889	0	0	73889
S/G/Y/R/B/O	NT_005526	AC024102	73069241	3	chr3	NT_005526	AC119731	73141452	3	2052	0	0	2052
S/G/Y/R/B/O	NT_005526	AC119731	73141452	3	chr3	NT_005526	AC117489	73186152	3	26088	0	0	26088
S/G/Y/R/B/O	NT_005526	AC117489	73186152	3	chr3	NT_005526	AC108725	73303740	3	0	2002	0	2002
S/G/Y/R/B/O	NT_005526	AC108725	73303740	3	chr3	NT_005526	AC108702	73386298	3	0	0	0	0
S/G/Y/R/B/O	NT_005526	AC108725	73303740	3			AC044918	73141452		59409	5346	15480	80235
S/G/Y/R/B/O	NT_005526	AC108702	73386298	3	chr3	NT_005526	AC112511	73557404	1	80621	0	0	80621
S/G/Y/R/B/O	NT_005526	AC108702	73386298	3			AC013792	73186152		129920	2576	22268	154764
S/G/Y/R/B/O	NT_005526	AC108702	73386298	3			AC044918	73186152		81470	9542	447	91459
S/G/Y/R/B/O	NT_005526	AC112511	73557404	1	chr3	NT_005526	AC119038	73557412	3	0	0	32354	32354
S/G/Y/R/B/O	NT_005526	AC112511	73557404	1			AC013792	73557404		44326	0	20579	64905
S/G/Y/R/B/O	NT_005526	AC112511	73557404	1			AC073518	73557404		53505	2679	26422	82606
S/G/Y/R/B/O	NT_005526	AC119038	73557412	3	chr3	NT_005526	AC128691	73732661	3	2002	0	0	2002
S/G/Y/R/B/O	NT_005526	AC119038	73557412	3			AC073518	73557412		110052	2681	47579	160312
S/G/Y/R/B/O	NT_005526	AC128691	73732661	3	chr3	NT_005526	AC016930	73744301	3	2003	0	0	2003
S/G/Y/R/B/O	NT_005526	AC016930	73744301	3	chr3	NT_005526	AC117458	73767511	3	2008	0	0	2008
S/G/Y/R/B/O	NT_005526	AC117458	73767511	3	chr3	NT_005526	AC016950	73866746	3	2005	0	0	2005
S/G/Y/R/B/O	NT_005526	AC117458	73767511	3			AC013625	73732661		101233	0	0	101233
S/G/Y/R/B/O	NT_005526	AC016950	73866746	3	chr3	NT_005526	AC024222	74023957	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005526	AC016950	73866746	3			AC013625	73866746		57659	0	0	57659
S/G/Y/R/B/O	NT_005526	AC024222	74023957	3	chr3	NT_005526	AC128656	74058147	3	0	1998	0	1998
S/G/Y/R/B/O	NT_005526	AC128656	74058147	3	chr3	NT_005526	AC128653	74089138	3	47972	0	0	47972
S/G/Y/R/B/O	NT_005526	AC128653	74089138	3	chr3	NT_005526	AC016945	74249926	3	0	0	2131	2131
S/G/Y/R/B/O	NT_005526	AC016945	74249926	3	chr3	NT_005526	AC073856	74341156	3	0	2431	0	2431
S/G/Y/R/B/O	NT_005526	AC016945	74249926	3			AC128640	74341156		60775	0	0	60775
S/G/Y/R/B/O	NT_005526	AC073856	74341156	3	chr3	NT_005526	AC108746	74518519	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005526	AC073856	74341156	3			AC078979	74249926		39958	5545	28688	74191
S/G/Y/R/B/O	NT_005526	AC073856	74341156	3			AC128640	74518519		38366	0	0	38366
S/G/Y/R/B/O	NT_005526	AC108746	74518519	3	chr3	NT_005526	AC119043	74585208	3	0	1997	0	1997
S/G/Y/R/B/O	NT_005526	AC119043	74585208	3	chr3	NT_005526	AC130003	74747231	3	0	1965	0	1965
S/G/Y/R/B/O	NT_005526	AC130003	74747231	3	chr3	NT_005526	AC117481	74875077	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005526	AC117481	74875077	3	chr3	NT_005526	AC131233	75011485	3	0	0	0	0
S/G/Y/R/B/O	NT_005526	AC131233	75011485	3	chr3	NT_005526	AF042089	75026882	3	0	0	0	0
S/G/Y/R/B/O	NT_005526	AF042089	75026882	3	chr3	NT_005526	AC131236	75076264	1	0	0	0	0
S/G/Y/R/B/O	NT_005526	AC131236	75076264	1	chr3	NT_005526	AC034203	75148934	3	43194	0	0	43194
S/G/Y/R/B/O	NT_005526	AC131236	75076264	1			AF165177	75148934		38857	0	21901	60758
S/G/Y/R/B/O	NT_005526	AC034203	75148934	3	chr3	NT_005526	AC133041	75254636	3	0	0	0	0
S/G/Y/R/B/O	NT_005526	AC133041	75254636	3	chr3	NT_005526	AC108724	75263166	3	2003	0	0	2003
S/G/Y/R/B/O	NT_005526	AC108724	75263166	3	chr3	NT_005526	AL592170	75449939	3	0	0	0	0
S/G/Y/R/B/O	NT_005526	AC108724	75263166	3			AC012661	75449939		58644	0	2337	60981
S/G/Y/R/B/O	NT_005526	AC108724	75263166	3			AC133042	75254636		35023	8484	31398	74905
S/G/Y/R/B/O	NT_005526	AL592170	75449939	3
S/G/Y/R/B/O	NT_005526	AL592170	75449939	3			AC012661	75254636		58541	0	2312	60853
S/G/Y/R/B/O	NT_005526	AL592170	75449939	3			AC133042	75254636		35113	8497	31663	75273