Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_022459

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_022459	AC125766	79356918	3	chr3	NT_022459	AC125624	79476216	3	0	1994	0	1994
S/G/Y/R/B/O	NT_022459	AC125624	79476216	3	chr3	NT_022459	AC023122	79652145	3	32206	0	0	32206
S/G/Y/R/B/O	NT_022459	AC125624	79476216	3			AC026852	79652145		119024	2446	12688	134158
S/G/Y/R/B/O	NT_022459	AC023122	79652145	3	chr3	NT_022459	AC106726	79798505	3	0	0	7457	7457
S/G/Y/R/B/O	NT_022459	AC023122	79652145	3			AC016220	79356918		26363	0	22379	48742
S/G/Y/R/B/O	NT_022459	AC023122	79652145	3			AC026852	79356918		28868	2445	0	31313
S/G/Y/R/B/O	NT_022459	AC106726	79798505	3	chr3	NT_022459	AC107309	79991225	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022459	AC106726	79798505	3			AC016220	79476216		63249	0	2347	65596
S/G/Y/R/B/O	NT_022459	AC106726	79798505	3			AC036139	79652145		117651	12899	43624	174174
S/G/Y/R/B/O	NT_022459	AC107309	79991225	3	chr3	NT_022459	AC123022	80009494	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022459	AC123022	80009494	3	chr3	NT_022459	AC108740	80159885	3	100693	0	0	100693
S/G/Y/R/B/O	NT_022459	AC123022	80009494	3			AC060778	80009494		75864	8419	13714	97997
S/G/Y/R/B/O	NT_022459	AC108740	80159885	3	chr3	NT_022459	AC108690	80192900	3	9249	0	0	9249
S/G/Y/R/B/O	NT_022459	AC108740	80159885	3			AC060778	80159885		60285	3357	6982	70624
S/G/Y/R/B/O	NT_022459	AC108690	80192900	3	chr3	NT_022459	AC067738	80378645	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022459	AC108690	80192900	3			AC012298	80009494		33347	0	11627	44974
S/G/Y/R/B/O	NT_022459	AC108690	80192900	3			AC061986	80009494		135976	11972	1416	149364
S/G/Y/R/B/O	NT_022459	AC108690	80192900	3			AC076963	80378645		90103	5851	34450	130404
S/G/Y/R/B/O	NT_022459	AC067738	80378645	3	chr3	NT_022459	AC068756	80459524	3	0	1997	0	1997
S/G/Y/R/B/O	NT_022459	AC067738	80378645	3			AC012298	80159885		13591	0	0	13591
S/G/Y/R/B/O	NT_022459	AC067738	80378645	3			AC076963	80459524		17120	2455	1799	21374
S/G/Y/R/B/O	NT_022459	AC067738	80378645	3			AC116442	80192900		21520	0	0	21520
S/G/Y/R/B/O	NT_022459	AC068756	80459524	3	chr3	NT_022459	AC128715	80538839	3	0	0	1754	1754
S/G/Y/R/B/O	NT_022459	AC068756	80459524	3			AC116442	80378645		75737	0	0	75737
S/G/Y/R/B/O	NT_022459	AC128715	80538839	3	chr3	NT_022459	AC129677	80635684	3	0	1998	0	1998
S/G/Y/R/B/O	NT_022459	AC129677	80635684	3	chr3	NT_022459	AC099664	80706871	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022459	AC099664	80706871	3	chr3	NT_022459	AC099542	80862093	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC099664	80706871	3			AC024967	80538839		65090	1580	23911	90581
S/G/Y/R/B/O	NT_022459	AC099664	80706871	3			AC134884	80635684		11279	4963	9461	25703
S/G/Y/R/B/O	NT_022459	AC099542	80862093	3	chr3	NT_022459	AC107302	81030902	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC099542	80862093	3			AC023945	80635684		51890	0	6641	58531
S/G/Y/R/B/O	NT_022459	AC107302	81030902	3	chr3	NT_022459	AC099049	81163590	3	91309	0	0	91309
S/G/Y/R/B/O	NT_022459	AC107302	81030902	3			AC022071	80635684		82638	1512	32453	116603
S/G/Y/R/B/O	NT_022459	AC107302	81030902	3			AC023945	80635684		129386	15561	32605	177552
S/G/Y/R/B/O	NT_022459	AC099049	81163590	3	chr3	NT_022459	AC025029	81252619	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC099049	81163590	3			AC022071	81163590		42419	0	28828	71247
S/G/Y/R/B/O	NT_022459	AC099049	81163590	3			AC023945	81163590		51410	7891	21122	80423
S/G/Y/R/B/O	NT_022459	AC025029	81252619	3	chr3	NT_022459	AC017015	81341155	3	2046	0	0	2046
S/G/Y/R/B/O	NT_022459	AC017015	81341155	3	chr3	NT_022459	AC107030	81504664	3	76854	0	0	76854
S/G/Y/R/B/O	NT_022459	AC017015	81341155	3			AC068386	81252619		45731	0	20587	66318
S/G/Y/R/B/O	NT_022459	AC017015	81341155	3			AC129729	81504664		88508	0	0	88508
S/G/Y/R/B/O	NT_022459	AC107030	81504664	3	chr3	NT_022459	AC129807	81598898	3	0	1998	0	1998
S/G/Y/R/B/O	NT_022459	AC107030	81504664	3			AC068386	81341155		116596	9035	28577	154208
S/G/Y/R/B/O	NT_022459	AC129807	81598898	3	chr3	NT_022459	AC119735	81663988	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022459	AC129807	81598898	3			AC073164	81598898		67089	0	0	67089
S/G/Y/R/B/O	NT_022459	AC129807	81598898	3			AC130255	81663988		67082	0	0	67082
S/G/Y/R/B/O	NT_022459	AC119735	81663988	3	chr3	NT_022459	AC074269	81731941	3	0	1953	0	1953
S/G/Y/R/B/O	NT_022459	AC074269	81731941	3	chr3	NT_022459	AC112509	81912789	3	2873	0	0	2873
S/G/Y/R/B/O	NT_022459	AC112509	81912789	3	chr3	NT_022459	AC018449	82019917	3	2463	0	0	2463
S/G/Y/R/B/O	NT_022459	AC018449	82019917	3	chr3	NT_022459	AC128655	82174875	3	2002	0	0	2002
S/G/Y/R/B/O	NT_022459	AC128655	82174875	3	chr3	NT_022459	AC108743	82258884	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC108743	82258884	3	chr3	NT_022459	AC107295	82402566	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC108743	82258884	3			AC021982	82019917		14360	2666	1416	18442
S/G/Y/R/B/O	NT_022459	AC107295	82402566	3	chr3	NT_022459	AC117506	82488565	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022459	AC107295	82402566	3			AC021982	82019917		20410	2672	13072	36154
S/G/Y/R/B/O	NT_022459	AC107295	82402566	3			AC119738	82488565		17720	0	0	17720
S/G/Y/R/B/O	NT_022459	AC117506	82488565	3	chr3	NT_022459	AC107307	82506554	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022459	AC107307	82506554	3	chr3	NT_022459	AC107301	82662620	3	0	1925	0	1925
S/G/Y/R/B/O	NT_022459	AC107307	82506554	3			AC025807	82506554		117364	4798	9196	131358
S/G/Y/R/B/O	NT_022459	AC107301	82662620	3	chr3	NT_022459	AC125610	82834968	3	13715	0	0	13715
S/G/Y/R/B/O	NT_022459	AC107301	82662620	3			AC022981	82488565		133052	5346	4730	143128
S/G/Y/R/B/O	NT_022459	AC125610	82834968	3	chr3	NT_022459	AC023503	82992670	3	2003	0	0	2003
S/G/Y/R/B/O	NT_022459	AC125610	82834968	3			AC068360	82992670		110188	10935	4502	125625
S/G/Y/R/B/O	NT_022459	AC023503	82992670	3	chr3	NT_022459	AC018918	83153040	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022459	AC023503	82992670	3			AC034152	83153040		60431	3677	35576	99684
S/G/Y/R/B/O	NT_022459	AC018918	83153040	3	chr3	NT_022459	AC119037	83209186	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC018918	83153040	3			AC019112	82834968		13953	4025	7655	25633
S/G/Y/R/B/O	NT_022459	AC119037	83209186	3	chr3	NT_022459	AC117426	83370934	3	104502	0	0	104502
S/G/Y/R/B/O	NT_022459	AC119037	83209186	3			AC019112	82992670		56703	8450	53258	118411
S/G/Y/R/B/O	NT_022459	AC117426	83370934	3	chr3	NT_022459	AC129415	83417032	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC117426	83370934	3			AC019112	83370934		29502	4425	27159	61086
S/G/Y/R/B/O	NT_022459	AC117426	83370934	3			AC073207	83370934		32357	808	0	33165
S/G/Y/R/B/O	NT_022459	AC129415	83417032	3	chr3	NT_022459	AC092825	83523139	3	2005	0	0	2005
S/G/Y/R/B/O	NT_022459	AC092825	83523139	3	chr3	NT_022459	AC117464	83680981	3	2005	0	0	2005
S/G/Y/R/B/O	NT_022459	AC092825	83523139	3			AC092450	83523139		48021	789	24849	73659
S/G/Y/R/B/O	NT_022459	AC117464	83680981	3	chr3	NT_022459	AC119741	83833704	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC117464	83680981	3			AC073985	83417032		23433	5565	27979	56977
S/G/Y/R/B/O	NT_022459	AC119741	83833704	3	chr3	NT_022459	AC119728	83998934	3	2001	0	0	2001
S/G/Y/R/B/O	NT_022459	AC119728	83998934	3	chr3	NT_022459	AC108696	84024536	3	0	1996	0	1996
S/G/Y/R/B/O	NT_022459	AC108696	84024536	3	chr3	NT_022459	AC116303	84179876	3	2006	0	0	2006
S/G/Y/R/B/O	NT_022459	AC108696	84024536	3			AC022941	83833704		91117	2141	0	93258
S/G/Y/R/B/O	NT_022459	AC116303	84179876	3	chr3	NT_022459	AC107025	84228940	3	0	0	0	0
S/G/Y/R/B/O	NT_022459	AC107025	84228940	3	chr3	NT_022459	AC117482	84404968	3	41327	0	0	41327
S/G/Y/R/B/O	NT_022459	AC107025	84228940	3			AC023547	84024536		99824	6696	32139	138659
S/G/Y/R/B/O	NT_022459	AC117482	84404968	3	chr3	NT_022459	AC119039	84532879	3	0	1988	0	1988
S/G/Y/R/B/O	NT_022459	AC117482	84404968	3			AC019145	84404968		30210	1990	25192	57392
S/G/Y/R/B/O	NT_022459	AC117482	84404968	3			AC023547	84404968		28153	0	0	28153
S/G/Y/R/B/O	NT_022459	AC119039	84532879	3	chr3	NT_022459	AC025551	84633384	1	59932	0	0	59932
S/G/Y/R/B/O	NT_022459	AC119039	84532879	3			AC019145	84532879		39594	0	12059	51653
S/G/Y/R/B/O	NT_022459	AC025551	84633384	1	chr3	NT_022459	AC132660	84648452	3	38339	0	3620	41959
S/G/Y/R/B/O	NT_022459	AC025551	84633384	1	chr3	NT_022459	AC023600	84710710	3	24651	0	0	24651
S/G/Y/R/B/O	NT_022459	AC025551	84633384	1			AC019145	84404968		30547	0	22821	53368
S/G/Y/R/B/O	NT_022459	AC025551	84633384	1			AC026103	84710710		68708	1081	22851	92640
S/G/Y/R/B/O	NT_022459	AC132660	84648452	3	chr3	NT_022459	AC023600	84710710	3	2005	0	0	2005
S/G/Y/R/B/O	NT_022459	AC132660	84648452	3			AC026103	84633384		24355	0	0	24355
S/G/Y/R/B/O	NT_022459	AC132660	84648452	3			AC026103	84633384		24355	0	0	24355
S/G/Y/R/B/O	NT_022459	AC023600	84710710	3	chr3	NT_022459	AC107026	84896036	3	0	1144	0	1144
S/G/Y/R/B/O	NT_022459	AC023600	84710710	3	chr3	NT_022459	AC025551	84633384	1	24651	0	0	24651
S/G/Y/R/B/O	NT_022459	AC023600	84710710	3			AC026103	84633384		28003	0	0	28003
S/G/Y/R/B/O	NT_022459	AC107026	84896036	3	chr3	NT_022459	AC108700	85087950	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022459	AC107026	84896036	3			AC011678	84648452		19442	0	902	20344
S/G/Y/R/B/O	NT_022459	AC107026	84896036	3			AC018911	84648452		140873	0	1996	142869
S/G/Y/R/B/O	NT_022459	AC108700	85087950	3	chr3	NT_022459	AC018361	85225280	3	16035	0	0	16035
S/G/Y/R/B/O	NT_022459	AC108700	85087950	3			AC011678	85087950		139306	6785	6935	153026
S/G/Y/R/B/O	NT_022459	AC018361	85225280	3	chr3	NT_022459	AC119729	85369786	3	0	1997	0	1997
S/G/Y/R/B/O	NT_022459	AC018361	85225280	3			AC011678	84896036		16029	0	0	16029
S/G/Y/R/B/O	NT_022459	AC119729	85369786	3	chr3	NT_022459	AC117452	85495633	3	52363	0	0	52363
S/G/Y/R/B/O	NT_022459	AC119729	85369786	3			AC017055	85369786		38553	2514	7483	48550
S/G/Y/R/B/O	NT_022459	AC117452	85495633	3	chr3	NT_022459	AC119726	85636555	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022459	AC117452	85495633	3			AC017055	85495633		110249	6490	21120	137859
S/G/Y/R/B/O	NT_022459	AC119726	85636555	3