Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_022475

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_022475	AC117474	92803456	3	chr3	NT_022475	AC130896	92947616	3	2003	0	0	2003
S/G/Y/R/B/O	NT_022475	AC117474	92803456	3			AC112171	92319192		77222	0	59625	136847
S/G/Y/R/B/O	NT_022475	AC117474	92803456	3			AC131214	92947616		36107	0	29306	65413
S/G/Y/R/B/O	NT_022475	AC130896	92947616	3	chr3	NT_022475	AC019233	93027672	3	2009	0	0	2009
S/G/Y/R/B/O	NT_022475	AC130896	92947616	3			AC131214	92803456		55447	0	1571	57018
S/G/Y/R/B/O	NT_022475	AC019233	93027672	3	chr3	NT_022475	AC108710	93289538	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC019233	93027672	3			AC068019	92803456		43832	0	0	43832
S/G/Y/R/B/O	NT_022475	AC019233	93027672	3			AC131214	92947616		20736	0	24422	45158
S/G/Y/R/B/O	NT_022475	AC108710	93289538	3	chr3	NT_022475	AC024218	93426340	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC108710	93289538	3			AC024890	92947616		172019	0	0	172019
S/G/Y/R/B/O	NT_022475	AC108710	93289538	3			AC068019	92947616		99481	0	0	99481
S/G/Y/R/B/O	NT_022475	AC024218	93426340	3	chr3	NT_022475	AC016955	93566196	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC016955	93566196	3	chr3	NT_022475	AC117427	93733534	3	2005	0	0	2005
S/G/Y/R/B/O	NT_022475	AC117427	93733534	3	chr3	NT_022475	AC108698	93815072	3	0	2001	0	2001
S/G/Y/R/B/O	NT_022475	AC108698	93815072	3	chr3	NT_022475	AC015895	93886548	1	73187	0	545	73732
S/G/Y/R/B/O	NT_022475	AC108698	93815072	3	chr3	NT_022475	AC011281	93951722	1	27663	0	14002	41665
S/G/Y/R/B/O	NT_022475	AC015895	93886548	1	chr3	NT_022475	AC011281	93951722	1	31426	0	10856	42282
S/G/Y/R/B/O	NT_022475	AC011281	93951722	1	chr3	NT_022475	AC108715	94017899	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC011281	93951722	1	chr3	NT_022475	AC108698	93815072	3	27663	0	14002	41665
S/G/Y/R/B/O	NT_022475	AC108715	94017899	3	chr3	NT_022475	AC108695	94194361	3	119324	0	0	119324
S/G/Y/R/B/O	NT_022475	AC108715	94017899	3			AC027476	93886548		71283	3699	65545	140527
S/G/Y/R/B/O	NT_022475	AC108715	94017899	3			AC068392	93886548		26114	2977	18714	47805
S/G/Y/R/B/O	NT_022475	AC108695	94194361	3	chr3	NT_022475	AC067740	94265882	3	2007	0	0	2007
S/G/Y/R/B/O	NT_022475	AC108695	94194361	3			AC027476	94194361		78214	4136	10598	92948
S/G/Y/R/B/O	NT_022475	AC108695	94194361	3			AC068392	94265882		70790	9310	23216	103316
S/G/Y/R/B/O	NT_022475	AC067740	94265882	3	chr3	NT_022475	AC107614	94313871	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC107614	94313871	3	chr3	NT_022475	AC109781	94471564	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC107614	94313871	3			AC068415	94194361		54463	2855	8765	66083
S/G/Y/R/B/O	NT_022475	AC109781	94471564	3	chr3	NT_022475	AC131151	94587189	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022475	AC109781	94471564	3			AC068415	94194361		20339	0	0	20339
S/G/Y/R/B/O	NT_022475	AC131151	94587189	3	chr3	NT_022475	AC134998	94697177	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC134998	94697177	3	chr3	NT_022475	AC046177	94815567	1	54826	0	3899	58725
S/G/Y/R/B/O	NT_022475	AC134998	94697177	3			AC107303	94815567		40959	0	19394	60353
S/G/Y/R/B/O	NT_022475	AC134998	94697177	3			AC107303	94815567		40959	0	19394	60353
S/G/Y/R/B/O	NT_022475	AC134998	94697177	3			AC136189	94815567		10763	7541	17135	35439
S/G/Y/R/B/O	NT_022475	AC134998	94697177	3			AC136189	94815567		10763	7541	17135	35439
S/G/Y/R/B/O	NT_022475	AC046177	94815567	1	chr3	NT_022475	AC106719	94842935	3	14331	2914	11686	28931
S/G/Y/R/B/O	NT_022475	AC046177	94815567	1			AC011575	94815567		14302	1843	8355	24500
S/G/Y/R/B/O	NT_022475	AC046177	94815567	1			AC107303	94842935		97329	3826	10691	111846
S/G/Y/R/B/O	NT_022475	AC046177	94815567	1			AC136189	94697177		20756	14498	16543	51797
S/G/Y/R/B/O	NT_022475	AC106719	94842935	3	chr3	NT_022475	AC117432	94997587	3	55064	0	0	55064
S/G/Y/R/B/O	NT_022475	AC106719	94842935	3			AC011575	94697177		87659	2680	30221	120560
S/G/Y/R/B/O	NT_022475	AC106719	94842935	3			AC136189	94997587		19902	11533	3319	34754
S/G/Y/R/B/O	NT_022475	AC117432	94997587	3	chr3	NT_022475	AC117433	95095147	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022475	AC117432	94997587	3			AC011575	94997587		29040	4175	2168	35383
S/G/Y/R/B/O	NT_022475	AC117433	95095147	3	chr3	NT_022475	AC108739	95157712	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC108739	95157712	3	chr3	NT_022475	AC107304	95249912	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022475	AC107304	95249912	3	chr3	NT_022475	AC108697	95429442	3	65715	0	0	65715
S/G/Y/R/B/O	NT_022475	AC107304	95249912	3			AC016851	95249912		38480	2288	5340	46108
S/G/Y/R/B/O	NT_022475	AC107304	95249912	3			AC060756	95249912		50723	3854	25644	80221
S/G/Y/R/B/O	NT_022475	AC108697	95429442	3	chr3	NT_022475	AC107015	95527464	3	79067	0	0	79067
S/G/Y/R/B/O	NT_022475	AC108697	95429442	3			AC016851	95157712		79187	6078	5340	90605
S/G/Y/R/B/O	NT_022475	AC108697	95429442	3			AC025020	95157712		36384	0	10932	47316
S/G/Y/R/B/O	NT_022475	AC107015	95527464	3	chr3	NT_022475	AC117444	95604496	3	0	1998	0	1998
S/G/Y/R/B/O	NT_022475	AC107015	95527464	3			AC016851	95249912		33570	1725	2060	37355
S/G/Y/R/B/O	NT_022475	AC107015	95527464	3			AC025020	95249912		52341	0	12333	64674
S/G/Y/R/B/O	NT_022475	AC117444	95604496	3	chr3	NT_022475	AC106717	95707346	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC117444	95604496	3			AC024033	95604496		11824	1574	0	13398
S/G/Y/R/B/O	NT_022475	AC117444	95604496	3			AC027752	95604496		24665	3593	1022	29280
S/G/Y/R/B/O	NT_022475	AC106717	95707346	3	chr3	NT_022475	AC109782	95731272	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC109782	95731272	3	chr3	NT_022475	AC108714	95894863	3	48105	0	0	48105
S/G/Y/R/B/O	NT_022475	AC109782	95731272	3			AC027752	95527464		28511	6646	7899	43056
S/G/Y/R/B/O	NT_022475	AC109782	95731272	3			AC074082	95527464		23368	0	0	23368
S/G/Y/R/B/O	NT_022475	AC108714	95894863	3	chr3	NT_022475	AC119745	95997901	3	0	0	1823	1823
S/G/Y/R/B/O	NT_022475	AC108714	95894863	3			AC074082	95894863		86247	0	21723	107970
S/G/Y/R/B/O	NT_022475	AC119745	95997901	3	chr3	NT_022475	AC134730	96070227	3	2102	0	0	2102
S/G/Y/R/B/O	NT_022475	AC134730	96070227	3	chr3	NT_022475	AC107482	96111797	3	2015	0	0	2015
S/G/Y/R/B/O	NT_022475	AC134730	96070227	3			U90093	95997901		14002	0	0	14002
S/G/Y/R/B/O	NT_022475	AC134730	96070227	3			U90093	95997901		14002	0	0	14002
S/G/Y/R/B/O	NT_022475	AC107482	96111797	3	chr3	NT_022475	AC110717	96292428	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022475	AC107482	96111797	3			AC026527	95997901		119696	8204	17465	145365
S/G/Y/R/B/O	NT_022475	AC110717	96292428	3	chr3	NT_022475	AC117470	96344948	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022475	AC117470	96344948	3	chr3	NT_022475	AC130510	96535578	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022475	AC117470	96344948	3			AC021156	96344948		127283	6370	1958	135611
S/G/Y/R/B/O	NT_022475	AC130510	96535578	3	chr3	NT_022475	AC117439	96595978	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022475	AC130510	96535578	3			AC117408	96535578		62364	0	0	62364
S/G/Y/R/B/O	NT_022475	AC117439	96595978	3	chr3	NT_022475	AC135369	96764645	3	2004	0	0	2004
S/G/Y/R/B/O	NT_022475	AC117439	96595978	3			AC023837	96344948		24145	0	25298	49443
S/G/Y/R/B/O	NT_022475	AC117439	96595978	3			AC117408	96344948		37302	0	15824	53126
S/G/Y/R/B/O	NT_022475	AC135369	96764645	3	chr3	NT_022475	AC110491	96777390	3	2005	0	0	2005
S/G/Y/R/B/O	NT_022475	AC110491	96777390	3	chr3	NT_022475	AC026100	96967361	3	97543	0	0	97543
S/G/Y/R/B/O	NT_022475	AC110491	96777390	3			AC027530	96967361		174942	4135	0	179077
S/G/Y/R/B/O	NT_022475	AC026100	96967361	3	chr3	NT_022475	AC024892	97079262	3	0	1994	0	1994
S/G/Y/R/B/O	NT_022475	AC026100	96967361	3			AC027530	97079262		96187	0	0	96187
S/G/Y/R/B/O	NT_022475	AC024892	97079262	3	chr3	NT_022475	AC117460	97108921	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC117460	97108921	3	chr3	NT_022475	AC117473	97292516	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC117473	97292516	3	chr3	NT_022475	AC108730	97376145	3	0	1998	0	1998
S/G/Y/R/B/O	NT_022475	AC108730	97376145	3	chr3	NT_022475	AC074274	97459379	3	0	1995	0	1995
S/G/Y/R/B/O	NT_022475	AC074274	97459379	3	chr3	NT_022475	AC021660	97501914	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC021660	97501914	3	chr3	NT_022475	AC108737	97664475	3	0	0	0	0
S/G/Y/R/B/O	NT_022475	AC108737	97664475	3	chr3	NT_022475	AC016962	97679145	3	0	2022	0	2022
S/G/Y/R/B/O	NT_022475	AC016962	97679145	3	chr3	NT_022475	AC106728	97726669	3	0	2004	0	2004
S/G/Y/R/B/O	NT_022475	AC106728	97726669	3	chr3	NT_022475	AC091213	97918288	1	6458	0	0	6458
S/G/Y/R/B/O	NT_022475	AC106728	97726669	3			AC013497	97664475		81284	9931	51635	142850
S/G/Y/R/B/O	NT_022475	AC091213	97918288	1	chr3	NT_022475	AC106704	97949314	3	26022	0	0	26022
S/G/Y/R/B/O	NT_022475	AC091213	97918288	1	chr3	NT_022475	AC091212	97986602	3	31293	0	0	31293
S/G/Y/R/B/O	NT_022475	AC091213	97918288	1			AC022838	97918288		36475	629	1289	38393
S/G/Y/R/B/O	NT_022475	AC106704	97949314	3	chr3	NT_022475	AC091212	97986602	3	2005	0	0	2005
S/G/Y/R/B/O	NT_022475	AC106704	97949314	3			AC022838	97726669		11655	0	0	11655
S/G/Y/R/B/O	NT_022475	AC091212	97986602	3
S/G/Y/R/B/O	NT_022475	AC091212	97986602	3	chr3	NT_022475	AC091213	97918288	1	31293	0	0	31293
S/G/Y/R/B/O	NT_022475	AC091212	97986602	3			AC022838	97918288		45380	1659	14239	61278