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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_005832 | AC097103 | 139971036 | 3 | chr3 | NT_005832 | AC046134 | 140058036 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_005832 | AC097103 | 139971036 | 3 |   |   | AC013379 | 139760274 | | 40856 | 0 | 18363 | 59219 |
S/G/Y/R/B/O |
NT_005832 | AC097103 | 139971036 | 3 |   |   | AC025890 | 139760274 | | 17614 | 0 | 0 | 17614 |
S/G/Y/R/B/O |
NT_005832 | AC046134 | 140058036 | 3 | chr3 | NT_005832 | AC110716 | 140224985 | 3 | 0 | 1971 | 0 | 1971 |
S/G/Y/R/B/O |
NT_005832 | AC046134 | 140058036 | 3 |   |   | AC025890 | 140058036 | | 89432 | 0 | 0 | 89432 |
S/G/Y/R/B/O |
NT_005832 | AC110716 | 140224985 | 3 | chr3 | NT_005832 | AC016933 | 140288944 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005832 | AC016933 | 140288944 | 3 | chr3 | NT_005832 | AC117390 | 140442707 | 3 | 0 | 0 | 1854 | 1854 |
S/G/Y/R/B/O |
NT_005832 | AC117390 | 140442707 | 3 | chr3 | NT_005832 | AC108744 | 140609695 | 3 | 0 | 0 | 64881 | 64881 |
S/G/Y/R/B/O |
NT_005832 | AC108744 | 140609695 | 3 | chr3 | NT_005832 | AC117396 | 140611696 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_005832 | AC117396 | 140611696 | 3 | chr3 | NT_005832 | AC117449 | 140756794 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005832 | AC117449 | 140756794 | 3 | chr3 | NT_005832 | AC092988 | 140832101 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005832 | AC092988 | 140832101 | 3 | chr3 | NT_005832 | AC010181 | 140986625 | 3 | 0 | 1944 | 0 | 1944 |
S/G/Y/R/B/O |
NT_005832 | AC092988 | 140832101 | 3 | chr3 | NT_005832 | AC130256 | 141011672 | 2 | 34989 | 0 | 0 | 34989 |
S/G/Y/R/B/O |
NT_005832 | AC092988 | 140832101 | 3 |   |   | AC022479 | 140986625 | | 156525 | 0 | 0 | 156525 |
S/G/Y/R/B/O |
NT_005832 | AC010181 | 140986625 | 3 | chr3 | NT_005832 | AC130256 | 141011672 | 2 | 26937 | 0 | 0 | 26937 |
S/G/Y/R/B/O |
NT_005832 | AC130256 | 141011672 | 2 | chr3 | NT_005832 | AC048346 | 141012084 | 3 | 85694 | 0 | 0 | 85694 |
S/G/Y/R/B/O |
NT_005832 | AC130256 | 141011672 | 2 | chr3 | NT_005832 | AC092988 | 140832101 | 3 | 34989 | 0 | 0 | 34989 |
S/G/Y/R/B/O |
NT_005832 | AC130256 | 141011672 | 2 |   |   | AC022479 | 140986625 | | 34992 | 0 | 0 | 34992 |
S/G/Y/R/B/O |
NT_005832 | AC048346 | 141012084 | 3 | chr3 | NT_005832 | AC026324 | 141177628 | 3 | 0 | 0 | 1710 | 1710 |
S/G/Y/R/B/O |
NT_005832 | AC048346 | 141012084 | 3 |   |   | AC015493 | 140832101 | | 58432 | 0 | 2458 | 60890 |
S/G/Y/R/B/O |
NT_005832 | AC048346 | 141012084 | 3 |   |   | AC025421 | 140832101 | | 10652 | 0 | 6587 | 17239 |
S/G/Y/R/B/O |
NT_005832 | AC026324 | 141177628 | 3 | chr3 | NT_005832 | AC121333 | 141273201 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005832 | AC026324 | 141177628 | 3 |   |   | AC015493 | 141011672 | | 12400 | 0 | 41895 | 54295 |
S/G/Y/R/B/O |
NT_005832 | AC026324 | 141177628 | 3 |   |   | AC129030 | 141273201 | | 34729 | 2661 | 2417 | 39807 |
S/G/Y/R/B/O |
NT_005832 | AC121333 | 141273201 | 3 | chr3 | NT_005832 | AC132032 | 141415579 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005832 | AC121333 | 141273201 | 3 |   |   | AC015493 | 141273201 | | 13627 | 0 | 0 | 13627 |
S/G/Y/R/B/O |
NT_005832 | AC121333 | 141273201 | 3 |   |   | AC129030 | 141177628 | | 25877 | 0 | 0 | 25877 |
S/G/Y/R/B/O |
NT_005832 | AC132032 | 141415579 | 3 | chr3 | NT_005832 | AC108727 | 141520517 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_005832 | AC108727 | 141520517 | 3 | chr3 | NT_005832 | AC022215 | 141674410 | 3 | 21885 | 0 | 0 | 21885 |
S/G/Y/R/B/O |
NT_005832 | AC108727 | 141520517 | 3 |   |   | AC009896 | 141520517 | | 78172 | 0 | 14323 | 92495 |
S/G/Y/R/B/O |
NT_005832 | AC022215 | 141674410 | 3 | chr3 | NT_005832 | AC117383 | 141832592 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005832 | AC022215 | 141674410 | 3 |   |   | AC009896 | 141415579 | | 20135 | 0 | 1218 | 21353 |
S/G/Y/R/B/O |
NT_005832 | AC117383 | 141832592 | 3 | chr3 | NT_005832 | AC010184 | 141898869 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005832 | AC010184 | 141898869 | 3 | chr3 | NT_005832 | AC092977 | 142087444 | 3 | 2006 | 0 | 0 | 2006 |
S/G/Y/R/B/O |
NT_005832 | AC010184 | 141898869 | 3 |   |   | AC025108 | 141898869 | | 46272 | 2372 | 0 | 48644 |
S/G/Y/R/B/O |
NT_005832 | AC092977 | 142087444 | 3 | chr3 | NT_005832 | AC092978 | 142206596 | 3 | 2227 | 0 | 0 | 2227 |
S/G/Y/R/B/O |
NT_005832 | AC092977 | 142087444 | 3 |   |   | AC025108 | 141898869 | | 77243 | 0 | 6147 | 83390 |
S/G/Y/R/B/O |
NT_005832 | AC092978 | 142206596 | 3 | chr3 | NT_005832 | AC112771 | 142260473 | 3 | 0 | 0 | 1770 | 1770 |
S/G/Y/R/B/O |
NT_005832 | AC112771 | 142260473 | 3 | chr3 | NT_005832 | AC112504 | 142294107 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005832 | AC112771 | 142260473 | 3 |   |   | AC068693 | 142260473 | | 23116 | 3623 | 0 | 26739 |
S/G/Y/R/B/O |
NT_005832 | AC112504 | 142294107 | 3 | chr3 | NT_005832 | AC128648 | 142509184 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005832 | AC112504 | 142294107 | 3 |   |   | AC010934 | 142294107 | | 27878 | 1780 | 14066 | 43724 |
S/G/Y/R/B/O |
NT_005832 | AC112504 | 142294107 | 3 |   |   | AC044879 | 142294107 | | 33709 | 1547 | 4337 | 39593 |
S/G/Y/R/B/O |
NT_005832 | AC112504 | 142294107 | 3 |   |   | AC068693 | 142294107 | | 51182 | 12619 | 19838 | 83639 |
S/G/Y/R/B/O |
NT_005832 | AC112504 | 142294107 | 3 |   |   | AC107019 | 142294107 | | 17798 | 0 | 26780 | 44578 |
S/G/Y/R/B/O |
NT_005832 | AC112504 | 142294107 | 3 |   |   | AC112133 | 142294107 | | 39406 | 0 | 0 | 39406 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 | chr3 | NT_005832 | AC133435 | 142559669 | 3 | 0 | 2002 | 0 | 2002 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 |   |   | AC010934 | 142509184 | | 35408 | 1777 | 8825 | 46010 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 |   |   | AC010934 | 142509184 | | 35408 | 1777 | 8825 | 46010 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 |   |   | AC044879 | 142509184 | | 30076 | 1526 | 7332 | 38934 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 |   |   | AC044879 | 142509184 | | 30076 | 1526 | 7332 | 38934 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 |   |   | AC107019 | 142509184 | | 18199 | 0 | 34312 | 52511 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 |   |   | AC107019 | 142509184 | | 18199 | 0 | 34312 | 52511 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 |   |   | AC112133 | 142509184 | | 36590 | 0 | 4539 | 41129 |
S/G/Y/R/B/O |
NT_005832 | AC128648 | 142509184 | 3 |   |   | AC112133 | 142509184 | | 36590 | 0 | 4539 | 41129 |
S/G/Y/R/B/O |
NT_005832 | AC133435 | 142559669 | 3 | chr3 | NT_005832 | AC108679 | 142672217 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005832 | AC133435 | 142559669 | 3 |   |   | AC010934 | 142559669 | | 18585 | 0 | 3799 | 22384 |
S/G/Y/R/B/O |
NT_005832 | AC133435 | 142559669 | 3 |   |   | AC044879 | 142559669 | | 37192 | 10121 | 9524 | 56837 |
S/G/Y/R/B/O |
NT_005832 | AC133435 | 142559669 | 3 |   |   | AC080008 | 142559669 | | 28502 | 0 | 16718 | 45220 |
S/G/Y/R/B/O |
NT_005832 | AC133435 | 142559669 | 3 |   |   | AC112133 | 142672217 | | 40441 | 2238 | 0 | 42679 |
S/G/Y/R/B/O |
NT_005832 | AC133435 | 142559669 | 3 |   |   | AC123384 | 142672217 | | 43737 | 6023 | 0 | 49760 |
S/G/Y/R/B/O |
NT_005832 | AC108679 | 142672217 | 3 | chr3 | NT_005832 | AC023508 | 142823667 | 3 | 0 | 1140 | 0 | 1140 |
S/G/Y/R/B/O |
NT_005832 | AC108679 | 142672217 | 3 |   |   | AC123384 | 142823667 | | 24288 | 0 | 0 | 24288 |
S/G/Y/R/B/O |
NT_005832 | AC023508 | 142823667 | 3 | chr3 | NT_005832 | AC109992 | 142958632 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005832 | AC109992 | 142958632 | 3 | chr3 | NT_005832 | AC134509 | 143069171 | 3 | 0 | 2013 | 0 | 2013 |
S/G/Y/R/B/O |
NT_005832 | AC134509 | 143069171 | 3 | chr3 | NT_005832 | AC072028 | 143152010 | 3 | 2049 | 0 | 0 | 2049 |
S/G/Y/R/B/O |
NT_005832 | AC072028 | 143152010 | 3 | chr3 | NT_005832 | AC022291 | 143338749 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_005832 | AC022291 | 143338749 | 3 | chr3 | NT_005832 | AC021074 | 143363227 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_005832 | AC022291 | 143338749 | 3 |   |   | AC013554 | 143069171 | | 10456 | 3234 | 4890 | 18580 |
S/G/Y/R/B/O |
NT_005832 | AC021074 | 143363227 | 3 | chr3 | NT_005832 | AC026304 | 143546327 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_005832 | AC021074 | 143363227 | 3 |   |   | AC013554 | 143152010 | | 85104 | 10743 | 15216 | 111063 |
S/G/Y/R/B/O |
NT_005832 | AC021074 | 143363227 | 3 |   |   | AC020648 | 143152010 | | 34456 | 0 | 0 | 34456 |
S/G/Y/R/B/O |
NT_005832 | AC021074 | 143363227 | 3 |   |   | AC055737 | 143546327 | | 20798 | 2541 | 0 | 23339 |
S/G/Y/R/B/O |
NT_005832 | AC021074 | 143363227 | 3 |   |   | AC079593 | 143546327 | | 90033 | 0 | 67384 | 157417 |
S/G/Y/R/B/O |
NT_005832 | AC026304 | 143546327 | 3 | chr3 | NT_005832 | AC018450 | 143551027 | 3 | 2002 | 0 | 0 | 2002 |
S/G/Y/R/B/O |
NT_005832 | AC018450 | 143551027 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_005832 | AC018450 | 143551027 | 3 |   |   | AC020648 | 143363227 | | 30765 | 0 | 36397 | 67162 |
S/G/Y/R/B/O |
NT_005832 | AC018450 | 143551027 | 3 |   |   | AC055737 | 143546327 | | 90939 | 3216 | 20173 | 114328 |
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