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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_005567 | AC072039 | 136411747 | 3 | chr3 | NT_005567 | AC092991 | 136564707 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_005567 | AC092991 | 136564707 | 3 | chr3 | NT_005567 | AC069524 | 136713433 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_005567 | AC092991 | 136564707 | 3 |   |   | AC026969 | 136564707 | | 49664 | 5716 | 18410 | 73790 |
S/G/Y/R/B/O |
NT_005567 | AC069524 | 136713433 | 3 | chr3 | NT_005567 | AC107425 | 136875239 | 3 | 2012 | 0 | 0 | 2012 |
S/G/Y/R/B/O |
NT_005567 | AC069524 | 136713433 | 3 |   |   | AC017107 | 136411747 | | 84661 | 0 | 1635 | 86296 |
S/G/Y/R/B/O |
NT_005567 | AC069524 | 136713433 | 3 |   |   | AC022799 | 136411747 | | 11587 | 9563 | 3136 | 24286 |
S/G/Y/R/B/O |
NT_005567 | AC069524 | 136713433 | 3 |   |   | AC027089 | 136411747 | | 27044 | 6968 | 2823 | 36835 |
S/G/Y/R/B/O |
NT_005567 | AC069524 | 136713433 | 3 |   |   | AC027294 | 136411747 | | 22393 | 0 | 22552 | 44945 |
S/G/Y/R/B/O |
NT_005567 | AC069524 | 136713433 | 3 |   |   | AC069238 | 136411747 | | 50158 | 4526 | 30832 | 85516 |
S/G/Y/R/B/O |
NT_005567 | AC069524 | 136713433 | 3 |   |   | AC072040 | 136411747 | | 15051 | 0 | 22878 | 37929 |
S/G/Y/R/B/O |
NT_005567 | AC107425 | 136875239 | 3 | chr3 | NT_005567 | AC128712 | 137003524 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005567 | AC107425 | 136875239 | 3 |   |   | AC022799 | 136875239 | | 63081 | 17441 | 5167 | 85689 |
S/G/Y/R/B/O |
NT_005567 | AC107425 | 136875239 | 3 |   |   | AC027089 | 136875239 | | 91554 | 4393 | 7311 | 103258 |
S/G/Y/R/B/O |
NT_005567 | AC128712 | 137003524 | 3 | chr3 | NT_005567 | AC069514 | 137115624 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005567 | AC128712 | 137003524 | 3 |   |   | AC112921 | 137115624 | | 44727 | 0 | 13679 | 58406 |
S/G/Y/R/B/O |
NT_005567 | AC069514 | 137115624 | 3 | chr3 | NT_005567 | AC117382 | 137156371 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_005567 | AC117382 | 137156371 | 3 | chr3 | NT_005567 | AC096992 | 137258093 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_005567 | AC117382 | 137156371 | 3 |   |   | AC074266 | 137003524 | | 11929 | 0 | 4738 | 16667 |
S/G/Y/R/B/O |
NT_005567 | AC096992 | 137258093 | 3 | chr3 | NT_005567 | AC011597 | 137309059 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_005567 | AC096992 | 137258093 | 3 |   |   | AC067726 | 137309059 | | 13162 | 2067 | 5828 | 21057 |
S/G/Y/R/B/O |
NT_005567 | AC011597 | 137309059 | 3 | chr3 | NT_005567 | AC097313 | 137497128 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_005567 | AC011597 | 137309059 | 3 |   |   | AC023402 | 137156371 | | 20025 | 3121 | 4137 | 27283 |
S/G/Y/R/B/O |
NT_005567 | AC011597 | 137309059 | 3 |   |   | AC067726 | 137156371 | | 73041 | 0 | 10566 | 83607 |
S/G/Y/R/B/O |
NT_005567 | AC011597 | 137309059 | 3 |   |   | AC074266 | 137156371 | | 24165 | 0 | 6160 | 30325 |
S/G/Y/R/B/O |
NT_005567 | AC097313 | 137497128 | 3 | chr3 | NT_005567 | AC117385 | 137505588 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_005567 | AC097313 | 137497128 | 3 |   |   | AC023402 | 137309059 | | 10283 | 0 | 174 | 10457 |
S/G/Y/R/B/O |
NT_005567 | AC117385 | 137505588 | 3 | chr3 | NT_005567 | AC117388 | 137671770 | 3 | 15737 | 0 | 0 | 15737 |
S/G/Y/R/B/O |
NT_005567 | AC117385 | 137505588 | 3 |   |   | AC023402 | 137505588 | | 42112 | 9062 | 12160 | 63334 |
S/G/Y/R/B/O |
NT_005567 | AC117385 | 137505588 | 3 |   |   | AC027382 | 137505588 | | 15522 | 0 | 0 | 15522 |
S/G/Y/R/B/O |
NT_005567 | AC117385 | 137505588 | 3 |   |   | AC084230 | 137505588 | | 21488 | 0 | 0 | 21488 |
S/G/Y/R/B/O |
NT_005567 | AC117385 | 137505588 | 3 |   |   | AC121331 | 137671770 | | 15545 | 0 | 0 | 15545 |
S/G/Y/R/B/O |
NT_005567 | AC117388 | 137671770 | 3 | chr3 | NT_005567 | AC022077 | 137709811 | 3 | 2025 | 0 | 0 | 2025 |
S/G/Y/R/B/O |
NT_005567 | AC117388 | 137671770 | 3 |   |   | AC027382 | 137709811 | | 46807 | 2787 | 2147 | 51741 |
S/G/Y/R/B/O |
NT_005567 | AC117388 | 137671770 | 3 |   |   | AC084230 | 137709811 | | 53514 | 0 | 0 | 53514 |
S/G/Y/R/B/O |
NT_005567 | AC117388 | 137671770 | 3 |   |   | AC121331 | 137505588 | | 47062 | 0 | 5532 | 52594 |
S/G/Y/R/B/O |
NT_005567 | AC022077 | 137709811 | 3 | chr3 | NT_005567 | AC117483 | 137866062 | 1 | 10465 | 0 | 0 | 10465 |
S/G/Y/R/B/O |
NT_005567 | AC022077 | 137709811 | 3 |   |   | AC027382 | 137505588 | | 53152 | 6994 | 8130 | 68276 |
S/G/Y/R/B/O |
NT_005567 | AC022077 | 137709811 | 3 |   |   | AC084230 | 137505588 | | 65469 | 0 | 1156 | 66625 |
S/G/Y/R/B/O |
NT_005567 | AC022077 | 137709811 | 3 |   |   | AC121331 | 137866062 | | 57321 | 0 | 10323 | 67644 |
S/G/Y/R/B/O |
NT_005567 | AC117483 | 137866062 | 1 | chr3 | NT_005567 | AC117440 | 137917958 | 3 | 31343 | 4663 | 0 | 36006 |
S/G/Y/R/B/O |
NT_005567 | AC117440 | 137917958 | 3 | chr3 | NT_005567 | AC117399 | 138117344 | 3 | 0 | 1536 | 0 | 1536 |
S/G/Y/R/B/O |
NT_005567 | AC117399 | 138117344 | 3 | chr3 | NT_005567 | AC007159 | 138209808 | 3 | 7784 | 0 | 0 | 7784 |
S/G/Y/R/B/O |
NT_005567 | AC117399 | 138117344 | 3 |   |   | AC015652 | 138209808 | | 11286 | 0 | 0 | 11286 |
S/G/Y/R/B/O |
NT_005567 | AC007159 | 138209808 | 3 | chr3 | NT_005567 | AC117478 | 138357045 | 3 | 28758 | 0 | 0 | 28758 |
S/G/Y/R/B/O |
NT_005567 | AC007159 | 138209808 | 3 |   |   | AC015652 | 137917958 | | 57809 | 0 | 0 | 57809 |
S/G/Y/R/B/O |
NT_005567 | AC007159 | 138209808 | 3 |   |   | AC020788 | 137917958 | | 31726 | 0 | 86576 | 118302 |
S/G/Y/R/B/O |
NT_005567 | AC007159 | 138209808 | 3 |   |   | AC130421 | 138357045 | | 104086 | 0 | 35916 | 140002 |
S/G/Y/R/B/O |
NT_005567 | AC117478 | 138357045 | 3 | chr3 | NT_005567 | AC016252 | 138405441 | 3 | 2061 | 0 | 0 | 2061 |
S/G/Y/R/B/O |
NT_005567 | AC117478 | 138357045 | 3 |   |   | AC015652 | 138209808 | | 14470 | 0 | 0 | 14470 |
S/G/Y/R/B/O |
NT_005567 | AC117478 | 138357045 | 3 |   |   | AC130421 | 138405441 | | 14464 | 0 | 0 | 14464 |
S/G/Y/R/B/O |
NT_005567 | AC016252 | 138405441 | 3 | chr3 | NT_005567 | AC023049 | 138568333 | 3 | 0 | 0 | 1831 | 1831 |
S/G/Y/R/B/O |
NT_005567 | AC016252 | 138405441 | 3 |   |   | AC010810 | 138405441 | | 45368 | 0 | 16473 | 61841 |
S/G/Y/R/B/O |
NT_005567 | AC016252 | 138405441 | 3 |   |   | AC084436 | 138568333 | | 24147 | 4005 | 0 | 28152 |
S/G/Y/R/B/O |
NT_005567 | AC023049 | 138568333 | 3 | chr3 | NT_005567 | AC068777 | 138682226 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_005567 | AC023049 | 138568333 | 3 |   |   | AC022738 | 138405441 | | 91172 | 4595 | 0 | 95767 |
S/G/Y/R/B/O |
NT_005567 | AC023049 | 138568333 | 3 |   |   | AC084436 | 138682226 | | 70191 | 21276 | 8595 | 100062 |
S/G/Y/R/B/O |
NT_005567 | AC068777 | 138682226 | 3 | chr3 | NT_005567 | AC022337 | 138776396 | 3 | 2023 | 0 | 0 | 2023 |
S/G/Y/R/B/O |
NT_005567 | AC068777 | 138682226 | 3 |   |   | AC022738 | 138776396 | | 40156 | 0 | 0 | 40156 |
S/G/Y/R/B/O |
NT_005567 | AC068777 | 138682226 | 3 |   |   | AC084436 | 138568333 | | 12648 | 0 | 24680 | 37328 |
S/G/Y/R/B/O |
NT_005567 | AC022337 | 138776396 | 3 | chr3 | NT_005567 | AC022497 | 138859521 | 3 | 0 | 0 | 1641 | 1641 |
S/G/Y/R/B/O |
NT_005567 | AC022497 | 138859521 | 3 |   |   |   |   |   |   |   |   |   |
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