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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_022434 | AC117435 | 106263796 | 3 | chr3 | NT_022434 | AC074043 | 106320066 | 3 | 0 | 0 | 1805 | 1805 |
S/G/Y/R/B/O |
NT_022434 | AC074043 | 106320066 | 3 | chr3 | NT_022434 | AC063944 | 106508360 | 3 | 0 | 2015 | 0 | 2015 |
S/G/Y/R/B/O |
NT_022434 | AC074043 | 106320066 | 3 |   |   | AC009651 | 106320066 | | 34405 | 0 | 0 | 34405 |
S/G/Y/R/B/O |
NT_022434 | AC074043 | 106320066 | 3 |   |   | AC092267 | 106508360 | | 68722 | 0 | 0 | 68722 |
S/G/Y/R/B/O |
NT_022434 | AC063944 | 106508360 | 3 | chr3 | NT_022434 | AC068765 | 106688749 | 3 | 0 | 0 | 1679 | 1679 |
S/G/Y/R/B/O |
NT_022434 | AC063944 | 106508360 | 3 |   |   | AC009651 | 106263796 | | 44556 | 0 | 12985 | 57541 |
S/G/Y/R/B/O |
NT_022434 | AC063944 | 106508360 | 3 |   |   | AC067831 | 106263796 | | 38006 | 3996 | 55438 | 97440 |
S/G/Y/R/B/O |
NT_022434 | AC063944 | 106508360 | 3 |   |   | AC107022 | 106320066 | | 116377 | 0 | 0 | 116377 |
S/G/Y/R/B/O |
NT_022434 | AC068765 | 106688749 | 3 | chr3 | NT_022434 | AC072044 | 106838205 | 3 | 0 | 0 | 207 | 207 |
S/G/Y/R/B/O |
NT_022434 | AC068765 | 106688749 | 3 |   |   | AC009893 | 106320066 | | 99704 | 0 | 0 | 99704 |
S/G/Y/R/B/O |
NT_022434 | AC068765 | 106688749 | 3 |   |   | AC026876 | 106320066 | | 38226 | 2543 | 21506 | 62275 |
S/G/Y/R/B/O |
NT_022434 | AC068765 | 106688749 | 3 |   |   | AC067831 | 106508360 | | 16953 | 0 | 0 | 16953 |
S/G/Y/R/B/O |
NT_022434 | AC068765 | 106688749 | 3 |   |   | AC078987 | 106838205 | | 101333 | 0 | 14548 | 115881 |
S/G/Y/R/B/O |
NT_022434 | AC072044 | 106838205 | 3 | chr3 | NT_022434 | AC107299 | 107016450 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_022434 | AC072044 | 106838205 | 3 |   |   | AC009893 | 106838205 | | 84822 | 1104 | 0 | 85926 |
S/G/Y/R/B/O |
NT_022434 | AC072044 | 106838205 | 3 |   |   | AC025415 | 106838205 | | 108501 | 0 | 2737 | 111238 |
S/G/Y/R/B/O |
NT_022434 | AC072044 | 106838205 | 3 |   |   | AC026876 | 106838205 | | 21160 | 4806 | 27331 | 53297 |
S/G/Y/R/B/O |
NT_022434 | AC107299 | 107016450 | 3 | chr3 | NT_022434 | AC117477 | 107084892 | 3 | 69107 | 0 | 0 | 69107 |
S/G/Y/R/B/O |
NT_022434 | AC107299 | 107016450 | 3 |   |   | AC025415 | 107084892 | | 43601 | 2431 | 8546 | 54578 |
S/G/Y/R/B/O |
NT_022434 | AC117477 | 107084892 | 3 | chr3 | NT_022434 | AC027296 | 107133920 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022434 | AC117477 | 107084892 | 3 |   |   | AC011318 | 107084892 | | 22315 | 0 | 0 | 22315 |
S/G/Y/R/B/O |
NT_022434 | AC117477 | 107084892 | 3 |   |   | AC025415 | 107084892 | | 50016 | 2431 | 955 | 53402 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 | chr3 | NT_022434 | AC012020 | 107257145 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 |   |   | AC011318 | 107016450 | | 75869 | 0 | 49731 | 125600 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 |   |   | AC011318 | 107016450 | | 75869 | 0 | 49731 | 125600 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 |   |   | AC012340 | 107257145 | | 122853 | 0 | 0 | 122853 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 |   |   | AC012340 | 107257145 | | 122853 | 0 | 0 | 122853 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 |   |   | AC092450 | 107257145 | | 11082 | 4577 | 9860 | 25519 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 |   |   | AC092450 | 107257145 | | 11082 | 4577 | 9860 | 25519 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 |   |   | AC107424 | 107257145 | | 127229 | 0 | 0 | 127229 |
S/G/Y/R/B/O |
NT_022434 | AC027296 | 107133920 | 3 |   |   | AC107424 | 107257145 | | 127229 | 0 | 0 | 127229 |
S/G/Y/R/B/O |
NT_022434 | AC012020 | 107257145 | 3 | chr3 | NT_022434 | AC133475 | 107434980 | 3 | 0 | 0 | 1751 | 1751 |
S/G/Y/R/B/O |
NT_022434 | AC012020 | 107257145 | 3 |   |   | AC011318 | 107257145 | | 12543 | 0 | 27398 | 39941 |
S/G/Y/R/B/O |
NT_022434 | AC012020 | 107257145 | 3 |   |   | AC012340 | 107257145 | | 46629 | 2032 | 0 | 48661 |
S/G/Y/R/B/O |
NT_022434 | AC012020 | 107257145 | 3 |   |   | AC019003 | 107257145 | | 72735 | 2647 | 4842 | 80224 |
S/G/Y/R/B/O |
NT_022434 | AC012020 | 107257145 | 3 |   |   | AC019297 | 107257145 | | 134070 | 2873 | 12672 | 149615 |
S/G/Y/R/B/O |
NT_022434 | AC012020 | 107257145 | 3 |   |   | AC107424 | 107133920 | | 49142 | 0 | 0 | 49142 |
S/G/Y/R/B/O |
NT_022434 | AC012020 | 107257145 | 3 |   |   | AC130409 | 107133920 | | 107162 | 0 | 41006 | 148168 |
S/G/Y/R/B/O |
NT_022434 | AC133475 | 107434980 | 3 | chr3 | NT_022434 | AC078855 | 107434981 | 3 | 0 | 0 | 1830 | 1830 |
S/G/Y/R/B/O |
NT_022434 | AC078855 | 107434981 | 3 | chr3 | NT_022434 | AC135308 | 107608830 | 3 | 0 | 0 | 1869 | 1869 |
S/G/Y/R/B/O |
NT_022434 | AC078855 | 107434981 | 3 |   |   | AC019003 | 107434981 | | 46482 | 0 | 0 | 46482 |
S/G/Y/R/B/O |
NT_022434 | AC078855 | 107434981 | 3 |   |   | AC020731 | 107434981 | | 44978 | 1482 | 36205 | 82665 |
S/G/Y/R/B/O |
NT_022434 | AC078855 | 107434981 | 3 |   |   | AC092197 | 107434981 | | 52742 | 0 | 37351 | 90093 |
S/G/Y/R/B/O |
NT_022434 | AC135308 | 107608830 | 3 | chr3 | NT_022434 | AC069499 | 107625407 | 3 | 0 | 0 | 1824 | 1824 |
S/G/Y/R/B/O |
NT_022434 | AC069499 | 107625407 | 3 | chr3 | NT_022434 | AC092693 | 107833349 | 3 | 2271 | 0 | 0 | 2271 |
S/G/Y/R/B/O |
NT_022434 | AC069499 | 107625407 | 3 |   |   | AC019169 | 107434981 | | 61795 | 2064 | 31190 | 95049 |
S/G/Y/R/B/O |
NT_022434 | AC069499 | 107625407 | 3 |   |   | AC020731 | 107434981 | | 58109 | 1888 | 0 | 59997 |
S/G/Y/R/B/O |
NT_022434 | AC092693 | 107833349 | 3 | chr3 | NT_022434 | AC092185 | 107852077 | 3 | 0 | 1405 | 0 | 1405 |
S/G/Y/R/B/O |
NT_022434 | AC092693 | 107833349 | 3 |   |   | AC019169 | 107608830 | | 18314 | 2211 | 0 | 20525 |
S/G/Y/R/B/O |
NT_022434 | AC092185 | 107852077 | 3 | chr3 | NT_022434 | AC016932 | 108016634 | 3 | 2075 | 0 | 0 | 2075 |
S/G/Y/R/B/O |
NT_022434 | AC092185 | 107852077 | 3 |   |   | AC019169 | 108016634 | | 28587 | 2449 | 9214 | 40250 |
S/G/Y/R/B/O |
NT_022434 | AC016932 | 108016634 | 3 | chr3 | NT_022434 | AC080135 | 108103559 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022434 | AC080135 | 108103559 | 3 | chr3 | NT_022434 | AC016948 | 108165168 | 3 | 2016 | 0 | 0 | 2016 |
S/G/Y/R/B/O |
NT_022434 | AC016948 | 108165168 | 3 | chr3 | NT_022434 | AC112138 | 108317496 | 3 | 76712 | 0 | 0 | 76712 |
S/G/Y/R/B/O |
NT_022434 | AC112138 | 108317496 | 3 | chr3 | NT_022434 | AC063923 | 108362646 | 3 | 11840 | 0 | 0 | 11840 |
S/G/Y/R/B/O |
NT_022434 | AC063923 | 108362646 | 3 | chr3 | NT_022434 | AC076971 | 108516094 | 3 | 0 | 1922 | 0 | 1922 |
S/G/Y/R/B/O |
NT_022434 | AC076971 | 108516094 | 3 | chr3 | NT_022434 | AC124945 | 108589401 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022434 | AC124945 | 108589401 | 3 | chr3 | NT_022434 | AC092905 | 108638551 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_022434 | AC124945 | 108589401 | 3 | chr3 | NT_022434 | AC023130 | 108790415 | 1 | 35049 | 0 | 7864 | 42913 |
S/G/Y/R/B/O |
NT_022434 | AC092905 | 108638551 | 3 | chr3 | NT_022434 | AC023130 | 108790415 | 1 | 18040 | 0 | 32310 | 50350 |
S/G/Y/R/B/O |
NT_022434 | AC023130 | 108790415 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_022434 | AC023130 | 108790415 | 1 | chr3 | NT_022434 | AC124945 | 108589401 | 3 | 35049 | 0 | 7864 | 42913 |
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