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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_034563 | AC117463 | 167980323 | 3 | chr3 | NT_034563 | AC107311 | 168056584 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_034563 | AC107311 | 168056584 | 3 | chr3 | NT_034563 | AC069530 | 168248817 | 3 | 2009 | 0 | 0 | 2009 |
S/G/Y/R/B/O |
NT_034563 | AC069530 | 168248817 | 3 | chr3 | NT_034563 | AC117425 | 168258533 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034563 | AC117425 | 168258533 | 3 | chr3 | NT_034563 | AC079822 | 168400154 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034563 | AC079822 | 168400154 | 3 | chr3 | NT_034563 | AC026353 | 168579823 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_034563 | AC079822 | 168400154 | 3 |   |   | AC024891 | 168056584 | | 52174 | 0 | 0 | 52174 |
S/G/Y/R/B/O |
NT_034563 | AC026353 | 168579823 | 3 | chr3 | NT_034563 | AC128713 | 168716135 | 3 | 0 | 0 | 1798 | 1798 |
S/G/Y/R/B/O |
NT_034563 | AC026353 | 168579823 | 3 |   |   | AC024891 | 168579823 | | 73437 | 0 | 9334 | 82771 |
S/G/Y/R/B/O |
NT_034563 | AC128713 | 168716135 | 3 | chr3 | NT_034563 | AC117467 | 168740115 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034563 | AC117467 | 168740115 | 3 | chr3 | NT_034563 | AC069243 | 168830115 | 3 | 0 | 0 | 1841 | 1841 |
S/G/Y/R/B/O |
NT_034563 | AC069243 | 168830115 | 3 | chr3 | NT_034563 | AC124893 | 169019023 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_034563 | AC069243 | 168830115 | 3 |   |   | AC016863 | 168830115 | | 38155 | 1773 | 0 | 39928 |
S/G/Y/R/B/O |
NT_034563 | AC069243 | 168830115 | 3 |   |   | AC027705 | 168830115 | | 19171 | 1643 | 1200 | 22014 |
S/G/Y/R/B/O |
NT_034563 | AC069243 | 168830115 | 3 |   |   | AC092950 | 168830115 | | 18557 | 0 | 0 | 18557 |
S/G/Y/R/B/O |
NT_034563 | AC124893 | 169019023 | 3 | chr3 | NT_034563 | AC061710 | 169117114 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_034563 | AC124893 | 169019023 | 3 |   |   | AC009862 | 152736861 | | 12641 | 0 | 0 | 12641 |
S/G/Y/R/B/O |
NT_034563 | AC124893 | 169019023 | 3 |   |   | AC016863 | 152736861 | | 89119 | 2836 | 2170 | 94125 |
S/G/Y/R/B/O |
NT_034563 | AC124893 | 169019023 | 3 |   |   | AC027705 | 152736861 | | 93995 | 5007 | 0 | 99002 |
S/G/Y/R/B/O |
NT_034563 | AC124893 | 169019023 | 3 |   |   | AC092950 | 168830115 | | 97011 | 0 | 2679 | 99690 |
S/G/Y/R/B/O |
NT_034563 | AC124893 | 169019023 | 3 |   |   | AC130440 | 168830115 | | 67741 | 0 | 0 | 67741 |
S/G/Y/R/B/O |
NT_034563 | AC124893 | 169019023 | 3 |   |   | AL355364 | 168830115 | | 47442 | 4169 | 13733 | 65344 |
S/G/Y/R/B/O |
NT_034563 | AC061710 | 169117114 | 3 | chr3 | NT_034563 | AC018356 | 169302766 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_034563 | AC061710 | 169117114 | 3 |   |   | AC009862 | 152736861 | | 83126 | 2080 | 101650 | 186856 |
S/G/Y/R/B/O |
NT_034563 | AC061710 | 169117114 | 3 |   |   | AC011321 | 152736861 | | 47291 | 0 | 0 | 47291 |
S/G/Y/R/B/O |
NT_034563 | AC061710 | 169117114 | 3 |   |   | AC027705 | 169302766 | | 73831 | 6251 | 0 | 80082 |
S/G/Y/R/B/O |
NT_034563 | AC061710 | 169117114 | 3 |   |   | AC092950 | 169302766 | | 59264 | 2356 | 18243 | 79863 |
S/G/Y/R/B/O |
NT_034563 | AC061710 | 169117114 | 3 |   |   | AL355364 | 169019023 | | 21708 | 2221 | 3978 | 27907 |
S/G/Y/R/B/O |
NT_034563 | AC018356 | 169302766 | 3 | chr3 | NT_034563 | AC112911 | 169421617 | 3 | 0 | 1952 | 0 | 1952 |
S/G/Y/R/B/O |
NT_034563 | AC018356 | 169302766 | 3 |   |   | AC011321 | 169019023 | | 22249 | 0 | 16245 | 38494 |
S/G/Y/R/B/O |
NT_034563 | AC018356 | 169302766 | 3 |   |   | AC040973 | 169019023 | | 56682 | 0 | 25485 | 82167 |
S/G/Y/R/B/O |
NT_034563 | AC112911 | 169421617 | 3 | chr3 | NT_034563 | AC058333 | 169521080 | 3 | 0 | 1795 | 0 | 1795 |
S/G/Y/R/B/O |
NT_034563 | AC112911 | 169421617 | 3 |   |   | AC040973 | 169302766 | | 54819 | 2713 | 21865 | 79397 |
S/G/Y/R/B/O |
NT_034563 | AC112911 | 169421617 | 3 |   |   | AC055759 | 169302766 | | 12776 | 0 | 0 | 12776 |
S/G/Y/R/B/O |
NT_034563 | AC112911 | 169421617 | 3 |   |   | AC069414 | 21358085 | | 55617 | 4464 | 22525 | 82606 |
S/G/Y/R/B/O |
NT_034563 | AC058333 | 169521080 | 3 | chr3 | NT_034563 | AC092954 | 169593283 | 3 | 0 | 1555 | 0 | 1555 |
S/G/Y/R/B/O |
NT_034563 | AC058333 | 169521080 | 3 | chr3 | NT_022517 | AC063935 | 21358085 | 1 | 16195 | 11282 | 3219 | 30696 |
S/G/Y/R/B/O |
NT_034563 | AC058333 | 169521080 | 3 |   |   | AC055759 | 21358085 | | 73998 | 0 | 0 | 73998 |
S/G/Y/R/B/O |
NT_034563 | AC058333 | 169521080 | 3 |   |   | AC069414 | 21358085 | | 16341 | 0 | 22915 | 39256 |
S/G/Y/R/B/O |
NT_034563 | AC092954 | 169593283 | 3 | chr3 | NT_034563 | AC092932 | 169758180 | 3 | 0 | 0 | 1666 | 1666 |
S/G/Y/R/B/O |
NT_034563 | AC092954 | 169593283 | 3 |   |   | AC026080 | 169421617 | | 87613 | 5869 | 23998 | 117480 |
S/G/Y/R/B/O |
NT_034563 | AC092954 | 169593283 | 3 |   |   | AC046139 | 169421617 | | 53341 | 0 | 22090 | 75431 |
S/G/Y/R/B/O |
NT_034563 | AC092954 | 169593283 | 3 |   |   | AC055759 | 169421617 | | 25424 | 0 | 0 | 25424 |
S/G/Y/R/B/O |
NT_034563 | AC092954 | 169593283 | 3 |   |   | AC069414 | 21358085 | | 16494 | 0 | 0 | 16494 |
S/G/Y/R/B/O |
NT_034563 | AC092932 | 169758180 | 3 | chr3 | NT_034563 | AC007480 | 169793579 | 1 | 35371 | 0 | 0 | 35371 |
S/G/Y/R/B/O |
NT_034563 | AC092932 | 169758180 | 3 |   |   | AC130425 | 169593283 | | 35366 | 0 | 0 | 35366 |
S/G/Y/R/B/O |
NT_034563 | AC007480 | 169793579 | 1 | chr3 | NT_034563 | AC078985 | 169797403 | 3 | 87345 | 7653 | 29057 | 124055 |
S/G/Y/R/B/O |
NT_034563 | AC007480 | 169793579 | 1 |   |   | AC046139 | 169593283 | | 39052 | 0 | 0 | 39052 |
S/G/Y/R/B/O |
NT_034563 | AC007480 | 169793579 | 1 |   |   | AC130425 | 169758180 | | 154832 | 9263 | 5333 | 169428 |
S/G/Y/R/B/O |
NT_034563 | AC078985 | 169797403 | 3 | chr3 | NT_034563 | AC024099 | 169978385 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_034563 | AC078985 | 169797403 | 3 |   |   | AC130425 | 169978385 | | 80026 | 2587 | 27630 | 110243 |
S/G/Y/R/B/O |
NT_034563 | AC024099 | 169978385 | 3 | chr3 | NT_034563 | AC069220 | 170023444 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_034563 | AC024099 | 169978385 | 3 |   |   | AC067720 | 169978385 | | 47001 | 0 | 0 | 47001 |
S/G/Y/R/B/O |
NT_034563 | AC069220 | 170023444 | 3 | chr3 | NT_034563 | AC074033 | 170178892 | 3 | 2006 | 0 | 0 | 2006 |
S/G/Y/R/B/O |
NT_034563 | AC069220 | 170023444 | 3 |   |   | AC000054 | 169797403 | | 64185 | 0 | 0 | 64185 |
S/G/Y/R/B/O |
NT_034563 | AC069220 | 170023444 | 3 |   |   | AC010940 | 169797403 | | 139795 | 0 | 0 | 139795 |
S/G/Y/R/B/O |
NT_034563 | AC069220 | 170023444 | 3 |   |   | AC069510 | 169978385 | | 142256 | 0 | 14036 | 156292 |
S/G/Y/R/B/O |
NT_034563 | AC069220 | 170023444 | 3 |   |   | AL391414 | 170178892 | | 17796 | 0 | 0 | 17796 |
S/G/Y/R/B/O |
NT_034563 | AC069220 | 170023444 | 3 |   |   | AL445424 | 170178892 | | 18595 | 23023 | 0 | 41618 |
S/G/Y/R/B/O |
NT_034563 | AC074033 | 170178892 | 3 | chr3 | NT_034563 | AC007849 | 170304831 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_034563 | AC007849 | 170304831 | 3 | chr3 | NT_034563 | AC078802 | 170401369 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_034563 | AC007849 | 170304831 | 3 |   |   | AC114305 | 170178892 | | 64762 | 0 | 0 | 64762 |
S/G/Y/R/B/O |
NT_034563 | AC078802 | 170401369 | 1 | chr3 | NT_034563 | AC078795 | 170541901 | 3 | 5293 | 0 | 0 | 5293 |
S/G/Y/R/B/O |
NT_034563 | AC078795 | 170541901 | 3 | chr3 | NT_034563 | AC008040 | 170667346 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_034563 | AC008040 | 170667346 | 3 | chr3 | NT_034563 | AC023891 | 170870264 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_034563 | AC023891 | 170870264 | 3 | chr3 | NT_034563 | AC073288 | 171010458 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_034563 | AC023891 | 170870264 | 3 |   |   | AC044856 | 170667346 | | 10392 | 10429 | 3203 | 24024 |
S/G/Y/R/B/O |
NT_034563 | AC073288 | 171010458 | 3 | chr3 | NT_034563 | AC008041 | 171182478 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_034563 | AC073288 | 171010458 | 3 |   |   | AC044856 | 170870264 | | 54041 | 12417 | 9483 | 75941 |
S/G/Y/R/B/O |
NT_034563 | AC008041 | 171182478 | 3 | chr3 | NT_034563 | AC117446 | 171248161 | 1 | 113194 | 0 | 0 | 113194 |
S/G/Y/R/B/O |
NT_034563 | AC117446 | 171248161 | 1 | chr3 | NT_034563 | AC026316 | 171361370 | 3 | 42983 | 0 | 0 | 42983 |
S/G/Y/R/B/O |
NT_034563 | AC117446 | 171248161 | 1 |   |   | AC026094 | 171182478 | | 33231 | 0 | 8768 | 41999 |
S/G/Y/R/B/O |
NT_034563 | AC026316 | 171361370 | 3 | chr3 | NT_034563 | AC092955 | 171525779 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_034563 | AC026316 | 171361370 | 3 |   |   | AC026094 | 171361370 | | 64050 | 2172 | 8768 | 74990 |
S/G/Y/R/B/O |
NT_034563 | AC092955 | 171525779 | 3 | chr3 | NT_034563 | AC117476 | 171533419 | 3 | 0 | 0 | 1050 | 1050 |
S/G/Y/R/B/O |
NT_034563 | AC117476 | 171533419 | 3 | chr3 | NT_034563 | AC061708 | 171623883 | 3 | 2323 | 0 | 0 | 2323 |
S/G/Y/R/B/O |
NT_034563 | AC061708 | 171623883 | 3 | chr3 | NT_034563 | AC092918 | 171788538 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_034563 | AC061708 | 171623883 | 3 |   |   | AC023238 | 171525779 | | 146625 | 0 | 529 | 147154 |
S/G/Y/R/B/O |
NT_034563 | AC061708 | 171623883 | 3 |   |   | AC068853 | 171525779 | | 94238 | 0 | 1266 | 95504 |
S/G/Y/R/B/O |
NT_034563 | AC092918 | 171788538 | 3 | chr3 | NT_034563 | AC026315 | 171818172 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_034563 | AC092918 | 171788538 | 3 |   |   | AC023238 | 171533419 | | 31627 | 0 | 0 | 31627 |
S/G/Y/R/B/O |
NT_034563 | AC092918 | 171788538 | 3 |   |   | AC068853 | 171623883 | | 31534 | 0 | 0 | 31534 |
S/G/Y/R/B/O |
NT_034563 | AC026315 | 171818172 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_034563 | AC026315 | 171818172 | 3 |   |   | AC098564 | 171788538 | | 37841 | 0 | 361 | 38202 |
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