Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_005775

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_005775	AC117397	144804708	3	chr3	NT_005775	AC011592	144890105	3	42930	0	0	42930
S/G/Y/R/B/O	NT_005775	AC117397	144804708	3			AC073503	144890105		41454	9686	34048	85188
S/G/Y/R/B/O	NT_005775	AC011592	144890105	3	chr3	NT_005775	AC083803	145042237	3	41216	0	0	41216
S/G/Y/R/B/O	NT_005775	AC011592	144890105	3			AC073503	144890105		36776	3860	22770	63406
S/G/Y/R/B/O	NT_005775	AC011592	144890105	3			AC092926	145042237		42693	0	0	42693
S/G/Y/R/B/O	NT_005775	AC083803	145042237	3	chr3	NT_005775	AC012152	145143678	3	0	0	47518	47518
S/G/Y/R/B/O	NT_005775	AC083803	145042237	3			AC073631	145143678		35968	0	16451	52419
S/G/Y/R/B/O	NT_005775	AC012152	145143678	3	chr3	NT_005775	AC069426	145275937	3	15150	0	0	15150
S/G/Y/R/B/O	NT_005775	AC012152	145143678	3			AC073631	145275937		87333	0	16564	103897
S/G/Y/R/B/O	NT_005775	AC012152	145143678	3			AC073984	145275937		37239	0	0	37239
S/G/Y/R/B/O	NT_005775	AC012152	145143678	3			AC097102	145042237		15118	0	0	15118
S/G/Y/R/B/O	NT_005775	AC069426	145275937	3	chr3	NT_005775	AC092995	145389281	3	2005	0	0	2005
S/G/Y/R/B/O	NT_005775	AC069426	145275937	3			AC073984	145143678		27060	0	24645	51705
S/G/Y/R/B/O	NT_005775	AC069426	145275937	3			AC097102	145389281		127607	0	0	127607
S/G/Y/R/B/O	NT_005775	AC092995	145389281	3	chr3	NT_005775	AC117447	145503025	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC092995	145389281	3			AC068131	145389281		54594	0	31343	85937
S/G/Y/R/B/O	NT_005775	AC092995	145389281	3			AC097102	145275937		40151	0	0	40151
S/G/Y/R/B/O	NT_005775	AC117447	145503025	3	chr3	NT_005775	AC134099	145579253	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC134099	145579253	3	chr3	NT_005775	AC134507	145644907	3	85780	0	0	85780
S/G/Y/R/B/O	NT_005775	AC134507	145644907	3	chr3	NT_005775	AC117391	145757072	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC117391	145757072	3	chr3	NT_005775	AC016967	145918544	1	8536	0	0	8536
S/G/Y/R/B/O	NT_005775	AC016967	145918544	1	chr3	NT_005775	AC069424	146025266	1	9886	0	32704	42590
S/G/Y/R/B/O	NT_005775	AC016967	145918544	1			AC022734	145918544		70049	3646	1533	75228
S/G/Y/R/B/O	NT_005775	AC016967	145918544	1			AC076967	146025266		42635	0	0	42635
S/G/Y/R/B/O	NT_005775	AC069424	146025266	1	chr3	NT_005775	AC073895	146088624	3	102342	0	0	102342
S/G/Y/R/B/O	NT_005775	AC069424	146025266	1			AC022734	145918544		53851	0	2504	56355
S/G/Y/R/B/O	NT_005775	AC069424	146025266	1			AC076967	146088624		98247	0	36361	134608
S/G/Y/R/B/O	NT_005775	AC073895	146088624	3	chr3	NT_005775	AC069435	146255935	3	2005	0	0	2005
S/G/Y/R/B/O	NT_005775	AC073895	146088624	3			AC076967	146255935		71017	0	0	71017
S/G/Y/R/B/O	NT_005775	AC069435	146255935	3	chr3	NT_005775	AC117468	146365791	3	2033	0	0	2033
S/G/Y/R/B/O	NT_005775	AC069435	146255935	3			AC063975	146255935		25941	7593	14150	47684
S/G/Y/R/B/O	NT_005775	AC117468	146365791	3	chr3	NT_005775	AC055758	146387817	3	2032	0	0	2032
S/G/Y/R/B/O	NT_005775	AC055758	146387817	3	chr3	NT_005775	AC092976	146561273	3	0	0	1551	1551
S/G/Y/R/B/O	NT_005775	AC055758	146387817	3			AC026946	146255935		45044	2801	90426	138271
S/G/Y/R/B/O	NT_005775	AC092976	146561273	3	chr3	NT_005775	AC107021	146603320	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC092976	146561273	3			AC018369	146365791		28738	0	0	28738
S/G/Y/R/B/O	NT_005775	AC092976	146561273	3			AC026946	146365791		43241	0	405	43646
S/G/Y/R/B/O	NT_005775	AC107021	146603320	3	chr3	NT_005775	AC092982	146725962	3	21018	0	0	21018
S/G/Y/R/B/O	NT_005775	AC107021	146603320	3			AC018369	146387817		103364	0	13598	116962
S/G/Y/R/B/O	NT_005775	AC092982	146725962	3	chr3	NT_005775	AC048357	146894217	1	25773	0	0	25773
S/G/Y/R/B/O	NT_005775	AC092982	146725962	3			AC018369	146725962		20765	0	0	20765
S/G/Y/R/B/O	NT_005775	AC092982	146725962	3			AC053539	146894217		63540	1680	73856	139076
S/G/Y/R/B/O	NT_005775	AC048357	146894217	1	chr3	NT_005775	AC130509	146910259	3	18642	0	2480	21122
S/G/Y/R/B/O	NT_005775	AC130509	146910259	3	chr3	NT_005775	AC069528	146972677	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005775	AC069528	146972677	3	chr3	NT_005775	AC116544	147135840	3	2002	0	0	2002
S/G/Y/R/B/O	NT_005775	AC069528	146972677	3			AC015999	146972677		26480	0	20265	46745
S/G/Y/R/B/O	NT_005775	AC069528	146972677	3			AC021289	146972677		28118	0	1885	30003
S/G/Y/R/B/O	NT_005775	AC069528	146972677	3			AC130433	147135840		76301	0	0	76301
S/G/Y/R/B/O	NT_005775	AC116544	147135840	3	chr3	NT_005775	AC027748	147246127	1	33460	10864	31017	75341
S/G/Y/R/B/O	NT_005775	AC116544	147135840	3			AC015999	146910259		46045	0	22928	68973
S/G/Y/R/B/O	NT_005775	AC116544	147135840	3			AC021289	146910259		99843	6298	0	106141
S/G/Y/R/B/O	NT_005775	AC116544	147135840	3			AC130433	147251695		87696	0	0	87696
S/G/Y/R/B/O	NT_005775	AC027748	147246127	1	chr3	NT_005775	AC092990	147251695	3	25234	3787	0	29021
S/G/Y/R/B/O	NT_005775	AC027748	147246127	1			AC015999	147251695		32753	7856	8039	48648
S/G/Y/R/B/O	NT_005775	AC027748	147246127	1			AC021289	147251695		33384	19585	17355	70324
S/G/Y/R/B/O	NT_005775	AC027748	147246127	1			AC046133	147251695		35282	10486	40251	86019
S/G/Y/R/B/O	NT_005775	AC027748	147246127	1			AC130433	147135840		20679	7898	20966	49543
S/G/Y/R/B/O	NT_005775	AC092990	147251695	3	chr3	NT_005775	AC108699	147313301	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC092990	147251695	3			AC046133	147246127		14459	0	16422	30881
S/G/Y/R/B/O	NT_005775	AC108699	147313301	3	chr3	NT_005775	AC069066	147464881	3	85929	0	0	85929
S/G/Y/R/B/O	NT_005775	AC108699	147313301	3			AC011186	147135840		100320	0	10521	110841
S/G/Y/R/B/O	NT_005775	AC069066	147464881	3	chr3	NT_005775	AC108745	147525396	3	0	1989	0	1989
S/G/Y/R/B/O	NT_005775	AC069066	147464881	3			AC011186	147464881		85825	0	0	85825
S/G/Y/R/B/O	NT_005775	AC108745	147525396	3	chr3	NT_005775	AC092956	147589699	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005775	AC108745	147525396	3			AC117423	147589699		41220	0	0	41220
S/G/Y/R/B/O	NT_005775	AC092956	147589699	3	chr3	NT_005775	AC092957	147784209	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005775	AC092956	147589699	3			AC026554	147589699		12147	2685	0	14832
S/G/Y/R/B/O	NT_005775	AC092956	147589699	3			AC026824	147589699		56240	6273	6977	69490
S/G/Y/R/B/O	NT_005775	AC092956	147589699	3			AC068886	147589699		48557	3516	5878	57951
S/G/Y/R/B/O	NT_005775	AC092956	147589699	3			AC117423	147525396		57057	0	0	57057
S/G/Y/R/B/O	NT_005775	AC092957	147784209	3	chr3	NT_005775	AC092959	147943790	3	2003	0	0	2003
S/G/Y/R/B/O	NT_005775	AC092957	147784209	3			AC026554	147525396		142353	1706	1281	145340
S/G/Y/R/B/O	NT_005775	AC092957	147784209	3			AC026554	147525396		142353	1706	1281	145340
S/G/Y/R/B/O	NT_005775	AC092957	147784209	3			AC068886	147525396		91053	5110	1080	97243
S/G/Y/R/B/O	NT_005775	AC092957	147784209	3			AC068886	147525396		91053	5110	1080	97243
S/G/Y/R/B/O	NT_005775	AC092959	147943790	3	chr3	NT_005775	AC112507	148071369	3	0	0	49653	49653
S/G/Y/R/B/O	NT_005775	AC092959	147943790	3			AC026554	147943790		20594	0	0	20594
S/G/Y/R/B/O	NT_005775	AC092959	147943790	3			AC027060	147943790		125161	19694	7975	152830
S/G/Y/R/B/O	NT_005775	AC112507	148071369	3	chr3	NT_005775	AC092996	148256065	3	2003	0	0	2003
S/G/Y/R/B/O	NT_005775	AC112507	148071369	3			AC027060	148071369		33277	3721	5852	42850
S/G/Y/R/B/O	NT_005775	AC112507	148071369	3			AC027415	148071369		16968	0	0	16968
S/G/Y/R/B/O	NT_005775	AC092996	148256065	3	chr3	NT_005775	AC092925	148386940	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC092996	148256065	3			AC027415	148256065		58473	12388	6147	77008
S/G/Y/R/B/O	NT_005775	AC092996	148256065	3			AC112137	148256065		28627	0	0	28627
S/G/Y/R/B/O	NT_005775	AC092925	148386940	3	chr3	NT_005775	AC121755	148535070	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005775	AC092925	148386940	3			AC026135	148071369		89722	2187	30689	122598
S/G/Y/R/B/O	NT_005775	AC121755	148535070	3	chr3	NT_005775	AC092958	148556296	3	0	2004	0	2004
S/G/Y/R/B/O	NT_005775	AC092958	148556296	3	chr3	NT_005775	AC025566	148716984	3	0	0	1900	1900
S/G/Y/R/B/O	NT_005775	AC092958	148556296	3			AC020727	148556296		19480	0	5710	25190
S/G/Y/R/B/O	NT_005775	AC092958	148556296	3			AC021861	148556296		134623	0	14226	148849
S/G/Y/R/B/O	NT_005775	AC092958	148556296	3			AC092992	148716984		73514	2648	8576	84738
S/G/Y/R/B/O	NT_005775	AC025566	148716984	3	chr3	NT_005775	AC121756	148915373	3	0	1191	0	1191
S/G/Y/R/B/O	NT_005775	AC025566	148716984	3			AC020727	148535070		36491	3761	12422	52674
S/G/Y/R/B/O	NT_005775	AC025566	148716984	3			AC092992	148556296		66818	2203	37627	106648
S/G/Y/R/B/O	NT_005775	AC025566	148716984	3			AC117410	148556296		89517	0	0	89517
S/G/Y/R/B/O	NT_005775	AC121756	148915373	3	chr3	NT_005775	AC131006	149055182	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005775	AC121756	148915373	3			AC117410	148716984		89426	0	0	89426
S/G/Y/R/B/O	NT_005775	AC131006	149055182	3	chr3	NT_005775	AC069410	149060763	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005775	AC069410	149060763	3	chr3	NT_005775	AC025155	149237687	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC069410	149060763	3			AC024991	148915373		20565	4720	2956	28241
S/G/Y/R/B/O	NT_005775	AC069410	149060763	3			AC025153	148915373		13791	0	0	13791
S/G/Y/R/B/O	NT_005775	AC069410	149060763	3			AC093000	148915373		20924	4247	2508	27679
S/G/Y/R/B/O	NT_005775	AC025155	149237687	3	chr3	NT_005775	AC024897	149249368	3	2001	0	0	2001
S/G/Y/R/B/O	NT_005775	AC025155	149237687	3			AC024991	149249368		10205	4617	2801	17623
S/G/Y/R/B/O	NT_005775	AC025155	149237687	3			AC025153	149249368		18226	0	15156	33382
S/G/Y/R/B/O	NT_005775	AC025155	149237687	3			AC093000	149249368		10235	2172	3214	15621
S/G/Y/R/B/O	NT_005775	AC024897	149249368	3	chr3	NT_005775	AC092979	149452161	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005775	AC024897	149249368	3			AC024991	149249368		77557	8498	4434	90489
S/G/Y/R/B/O	NT_005775	AC024897	149249368	3			AC025153	149249368		52385	6718	12747	71850
S/G/Y/R/B/O	NT_005775	AC024897	149249368	3			AC025354	149237687		29811	0	3535	33346
S/G/Y/R/B/O	NT_005775	AC024897	149249368	3			AC093000	149452161		88893	0	5539	94432
S/G/Y/R/B/O	NT_005775	AC092979	149452161	3	chr3	NT_005775	AC021059	149573435	3	2005	0	0	2005
S/G/Y/R/B/O	NT_005775	AC092979	149452161	3			AC013626	149452161		69104	0	14308	83412
S/G/Y/R/B/O	NT_005775	AC092979	149452161	3			AC025354	149249368		122657	0	0	122657
S/G/Y/R/B/O	NT_005775	AC092979	149452161	3			AC055734	149249368		23280	8525	6541	38346
S/G/Y/R/B/O	NT_005775	AC092979	149452161	3			AC067729	149249368		48289	0	0	48289
S/G/Y/R/B/O	NT_005775	AC092979	149452161	3			AC130428	149249368		16069	0	68318	84387
S/G/Y/R/B/O	NT_005775	AC021059	149573435	3	chr3	NT_005775	AC131209	149735506	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC021059	149573435	3	chr3	NT_037577	AC126182	121338585	1	23646	3924	3564	31134
S/G/Y/R/B/O	NT_005775	AC021059	149573435	3			AC013626	149249368		76834	2444	0	79278
S/G/Y/R/B/O	NT_005775	AC021059	149573435	3			AC068577	149249368		23073	8186	4085	35344
S/G/Y/R/B/O	NT_005775	AC021059	149573435	3			AC130428	121338585		64880	0	14477	79357
S/G/Y/R/B/O	NT_005775	AC131209	149735506	3	chr3	NT_005775	AC093001	149783173	3	2002	0	0	2002
S/G/Y/R/B/O	NT_005775	AC131209	149735506	3	chr3	NT_037577	AC126182	121338585	1	38480	2410	0	40890
S/G/Y/R/B/O	NT_005775	AC131209	149735506	3			AC068577	121338585		35896	7762	1942	45600
S/G/Y/R/B/O	NT_005775	AC131209	149735506	3			AC072027	121338585		34844	4533	0	39377
S/G/Y/R/B/O	NT_005775	AC093001	149783173	3	chr3	NT_005775	AC073522	149942704	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005775	AC093001	149783173	3			AC025119	121338585		166100	1819	872	168791
S/G/Y/R/B/O	NT_005775	AC093001	149783173	3			AC068577	121338585		46050	1482	3715	51247
S/G/Y/R/B/O	NT_005775	AC093001	149783173	3			AC072027	121338585		46500	1774	47037	95311
S/G/Y/R/B/O	NT_005775	AC073522	149942704	3	chr3	NT_005775	AC108751	149976886	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005775	AC108751	149976886	3	chr3	NT_005775	AC012014	150106780	3	2013	0	0	2013
S/G/Y/R/B/O	NT_005775	AC108751	149976886	3			AC098589	149942704		56968	4253	38899	100120
S/G/Y/R/B/O	NT_005775	AC012014	150106780	3	chr3	NT_005775	AC108672	150304290	3	0	1902	0	1902
S/G/Y/R/B/O	NT_005775	AC012014	150106780	3			AC098589	149942704		41849	0	0	41849
S/G/Y/R/B/O	NT_005775	AC108672	150304290	3	chr3	NT_005775	AC069216	150320767	3	0	1999	0	1999
S/G/Y/R/B/O	NT_005775	AC069216	150320767	3	chr3	NT_005775	AC117395	150468913	3	0	0	2715	2715
S/G/Y/R/B/O	NT_005775	AC069216	150320767	3			AC024412	150320767		58021	8215	5173	71409
S/G/Y/R/B/O	NT_005775	AC117395	150468913	3	chr3	NT_005775	AC022494	150638808	3	2005	0	0	2005
S/G/Y/R/B/O	NT_005775	AC117395	150468913	3			AC021050	150468913		36763	0	0	36763
S/G/Y/R/B/O	NT_005775	AC117395	150468913	3			AC024412	150638808		29489	2940	4808	37237
S/G/Y/R/B/O	NT_005775	AC022494	150638808	3	chr3	NT_005775	AC117386	150659097	3	2006	0	0	2006
S/G/Y/R/B/O	NT_005775	AC117386	150659097	3	chr3	NT_005775	AC135000	150843967	3	0	1999	0	1999
S/G/Y/R/B/O	NT_005775	AC135000	150843967	3	chr3	NT_005775	AC018545	150910722	3	0	0	1710	1710
S/G/Y/R/B/O	NT_005775	AC018545	150910722	3	chr3	NT_005775	AC107426	151081081	3	0	0	0	0
S/G/Y/R/B/O	NT_005775	AC107426	151081081	3