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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_022396 | AC076966 | 179671693 | 1 | chr3 | NT_022396 | AC007823 | 179808231 | 3 | 0 | 0 | 49122 | 49122 |
S/G/Y/R/B/O |
NT_022396 | AC076966 | 179671693 | 1 |   |   | AC067992 | 179808231 | | 65799 | 15307 | 5375 | 86481 |
S/G/Y/R/B/O |
NT_022396 | AC007823 | 179808231 | 3 | chr3 | NT_022396 | AC007620 | 179935990 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022396 | AC007620 | 179935990 | 3 | chr3 | NT_022396 | AC090425 | 180108050 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022396 | AC007620 | 179935990 | 3 |   |   | AC079618 | 179808231 | | 34632 | 14947 | 43537 | 93116 |
S/G/Y/R/B/O |
NT_022396 | AC090425 | 180108050 | 3 | chr3 | NT_022396 | AC125604 | 180201906 | 3 | 0 | 2004 | 0 | 2004 |
S/G/Y/R/B/O |
NT_022396 | AC090425 | 180108050 | 3 |   |   | AC125619 | 180201906 | | 34550 | 0 | 22842 | 57392 |
S/G/Y/R/B/O |
NT_022396 | AC090425 | 180108050 | 3 |   |   | AC125619 | 180201906 | | 34550 | 0 | 22842 | 57392 |
S/G/Y/R/B/O |
NT_022396 | AC090425 | 180108050 | 3 |   |   | AC125619 | 180201906 | | 34550 | 0 | 22842 | 57392 |
S/G/Y/R/B/O |
NT_022396 | AC090425 | 180108050 | 3 |   |   | AC125619 | 180201906 | | 34550 | 0 | 22842 | 57392 |
S/G/Y/R/B/O |
NT_022396 | AC090425 | 180108050 | 3 |   |   | AC126184 | 180201906 | | 22193 | 0 | 6849 | 29042 |
S/G/Y/R/B/O |
NT_022396 | AC090425 | 180108050 | 3 |   |   | AC126184 | 180201906 | | 22193 | 0 | 6849 | 29042 |
S/G/Y/R/B/O |
NT_022396 | AC125604 | 180201906 | 3 | chr3 | NT_022396 | AC007687 | 180260724 | 3 | 3005 | 0 | 0 | 3005 |
S/G/Y/R/B/O |
NT_022396 | AC125604 | 180201906 | 3 |   |   | AC015620 | 180260724 | | 22605 | 1576 | 0 | 24181 |
S/G/Y/R/B/O |
NT_022396 | AC125604 | 180201906 | 3 |   |   | AC015620 | 180260724 | | 22605 | 1576 | 0 | 24181 |
S/G/Y/R/B/O |
NT_022396 | AC125604 | 180201906 | 3 |   |   | AC125619 | 180108050 | | 22835 | 0 | 36900 | 59735 |
S/G/Y/R/B/O |
NT_022396 | AC125604 | 180201906 | 3 |   |   | AC125619 | 180108050 | | 22835 | 0 | 36900 | 59735 |
S/G/Y/R/B/O |
NT_022396 | AC125604 | 180201906 | 3 |   |   | AC125619 | 180108050 | | 22835 | 0 | 36900 | 59735 |
S/G/Y/R/B/O |
NT_022396 | AC125604 | 180201906 | 3 |   |   | AC125619 | 180108050 | | 22835 | 0 | 36900 | 59735 |
S/G/Y/R/B/O |
NT_022396 | AC007687 | 180260724 | 3 | chr3 | NT_022396 | AC092939 | 180425377 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022396 | AC007687 | 180260724 | 3 |   |   | AC015620 | 180108050 | | 15097 | 0 | 63853 | 78950 |
S/G/Y/R/B/O |
NT_022396 | AC007687 | 180260724 | 3 |   |   | AC048335 | 180108050 | | 72735 | 2229 | 27165 | 102129 |
S/G/Y/R/B/O |
NT_022396 | AC007687 | 180260724 | 3 |   |   | AC073147 | 180108050 | | 30398 | 0 | 0 | 30398 |
S/G/Y/R/B/O |
NT_022396 | AC007687 | 180260724 | 3 |   |   | AC125619 | 180201906 | | 23167 | 0 | 4229 | 27396 |
S/G/Y/R/B/O |
NT_022396 | AC007687 | 180260724 | 3 |   |   | AC125619 | 180201906 | | 23167 | 0 | 4229 | 27396 |
S/G/Y/R/B/O |
NT_022396 | AC092939 | 180425377 | 3 | chr3 | NT_022396 | AC090024 | 180590522 | 3 | 0 | 2003 | 0 | 2003 |
S/G/Y/R/B/O |
NT_022396 | AC092939 | 180425377 | 3 |   |   | AC007653 | 180201906 | | 38355 | 0 | 0 | 38355 |
S/G/Y/R/B/O |
NT_022396 | AC092939 | 180425377 | 3 |   |   | AC069201 | 180201906 | | 10187 | 1352 | 3618 | 15157 |
S/G/Y/R/B/O |
NT_022396 | AC092939 | 180425377 | 3 |   |   | AC073147 | 180201906 | | 147501 | 2482 | 15122 | 165105 |
S/G/Y/R/B/O |
NT_022396 | AC092939 | 180425377 | 3 |   |   | AC074352 | 180201906 | | 101911 | 0 | 39839 | 141750 |
S/G/Y/R/B/O |
NT_022396 | AC092939 | 180425377 | 3 |   |   | AC092928 | 180590522 | | 142030 | 0 | 0 | 142030 |
S/G/Y/R/B/O |
NT_022396 | AC090024 | 180590522 | 3 | chr3 | NT_022396 | AC117418 | 180692905 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_022396 | AC090024 | 180590522 | 3 |   |   | AC069201 | 180590522 | | 46319 | 4413 | 23203 | 73935 |
S/G/Y/R/B/O |
NT_022396 | AC090024 | 180590522 | 3 |   |   | AC092928 | 180590522 | | 18512 | 0 | 0 | 18512 |
S/G/Y/R/B/O |
NT_022396 | AC117418 | 180692905 | 3 | chr3 | NT_022396 | AC134503 | 180743181 | 3 | 0 | 1389 | 0 | 1389 |
S/G/Y/R/B/O |
NT_022396 | AC117418 | 180692905 | 3 |   |   | AC073277 | 180692905 | | 13763 | 3618 | 7958 | 25339 |
S/G/Y/R/B/O |
NT_022396 | AC117418 | 180692905 | 3 |   |   | AC079139 | 180692905 | | 51308 | 0 | 458 | 51766 |
S/G/Y/R/B/O |
NT_022396 | AC134503 | 180743181 | 3 | chr3 | NT_022396 | AC068760 | 180814969 | 3 | 2013 | 0 | 0 | 2013 |
S/G/Y/R/B/O |
NT_022396 | AC068760 | 180814969 | 3 | chr3 | NT_022396 | AC104466 | 181008177 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_022396 | AC068760 | 180814969 | 3 |   |   | AC073277 | 180692905 | | 25448 | 1726 | 8134 | 35308 |
S/G/Y/R/B/O |
NT_022396 | AC068760 | 180814969 | 3 |   |   | AC079139 | 180692905 | | 15364 | 0 | 0 | 15364 |
S/G/Y/R/B/O |
NT_022396 | AC104466 | 181008177 | 3 | chr3 | NT_022396 | AC125618 | 181091727 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022396 | AC104466 | 181008177 | 3 |   |   | AC025999 | 180743181 | | 12044 | 0 | 14646 | 26690 |
S/G/Y/R/B/O |
NT_022396 | AC125618 | 181091727 | 3 | chr3 | NT_022396 | AC068298 | 181147832 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_022396 | AC125618 | 181091727 | 3 |   |   | AC025999 | 180814969 | | 22941 | 0 | 2693 | 25634 |
S/G/Y/R/B/O |
NT_022396 | AC068298 | 181147832 | 3 | chr3 | NT_022396 | AC108734 | 181326162 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022396 | AC068298 | 181147832 | 3 |   |   | AC025999 | 181147832 | | 42880 | 2748 | 2600 | 48228 |
S/G/Y/R/B/O |
NT_022396 | AC108734 | 181326162 | 3 | chr3 | NT_022396 | AC068638 | 181448108 | 3 | 2039 | 0 | 0 | 2039 |
S/G/Y/R/B/O |
NT_022396 | AC068638 | 181448108 | 3 | chr3 | NT_022396 | AC008009 | 181465604 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022396 | AC008009 | 181465604 | 3 | chr3 | NT_022396 | AC083904 | 181677948 | 3 | 0 | 1495 | 0 | 1495 |
S/G/Y/R/B/O |
NT_022396 | AC008009 | 181465604 | 3 |   |   | AC011240 | 181326162 | | 75077 | 13220 | 54350 | 142647 |
S/G/Y/R/B/O |
NT_022396 | AC083904 | 181677948 | 3 | chr3 | NT_022396 | AC068308 | 181828735 | 3 | 0 | 1743 | 0 | 1743 |
S/G/Y/R/B/O |
NT_022396 | AC083904 | 181677948 | 3 |   |   | AC011147 | 181465604 | | 80367 | 1923 | 15415 | 97705 |
S/G/Y/R/B/O |
NT_022396 | AC083904 | 181677948 | 3 |   |   | AC112131 | 181828735 | | 135017 | 0 | 0 | 135017 |
S/G/Y/R/B/O |
NT_022396 | AC068308 | 181828735 | 3 | chr3 | NT_022396 | AC022294 | 181983230 | 3 | 2007 | 0 | 0 | 2007 |
S/G/Y/R/B/O |
NT_022396 | AC068308 | 181828735 | 3 |   |   | AC011147 | 181828735 | | 21281 | 0 | 0 | 21281 |
S/G/Y/R/B/O |
NT_022396 | AC022294 | 181983230 | 3 | chr3 | NT_022396 | AC125613 | 182135163 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022396 | AC022294 | 181983230 | 3 | chr3 | NT_022676 | AC069211 | 184072436 | 1 | 14527 | 10512 | 13399 | 38438 |
S/G/Y/R/B/O |
NT_022396 | AC022294 | 181983230 | 3 |   |   | AC079737 | 184072436 | | 144612 | 0 | 0 | 144612 |
S/G/Y/R/B/O |
NT_022396 | AC125613 | 182135163 | 3 | chr3 | NT_022396 | AC117415 | 182209247 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_022396 | AC117415 | 182209247 | 3 | chr3 | NT_022396 | AC007547 | 182370337 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022396 | AC007547 | 182370337 | 3 | chr3 | NT_022396 | AC026359 | 182459140 | 3 | 0 | 2003 | 0 | 2003 |
S/G/Y/R/B/O |
NT_022396 | AC026359 | 182459140 | 3 | chr3 | NT_022396 | AC012081 | 182535989 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022396 | AC012081 | 182535989 | 3 |   |   |   |   |   |   |   |   |   |
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