Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_005580

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_005580	AC112211	32285014	3	chr3	NT_005580	AC123900	32467523	3	21810	0	0	21810
S/G/Y/R/B/O	NT_005580	AC123900	32467523	3	chr3	NT_005580	AC122176	32612190	3	37668	0	0	37668
S/G/Y/R/B/O	NT_005580	AC122176	32612190	3	chr3	NT_005580	AC093114	32750883	3	73875	0	0	73875
S/G/Y/R/B/O	NT_005580	AC122176	32612190	3	chr3	NT_005580	AC117943	32894295	1	38489	4450	2192	45131
S/G/Y/R/B/O	NT_005580	AC122176	32612190	3			AC069423	32612190		62834	0	10014	72848
S/G/Y/R/B/O	NT_005580	AC093114	32750883	3	chr3	NT_005580	AC132515	32844229	1	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC093114	32750883	3	chr3	NT_005580	AC117943	32894295	1	25031	4450	11257	40738
S/G/Y/R/B/O	NT_005580	AC093114	32750883	3			AC069423	32467523		56152	2369	25112	83633
S/G/Y/R/B/O	NT_005580	AC132515	32844229	1	chr3	NT_005580	AC113170	32858347	1	22043	2126	33729	57898
S/G/Y/R/B/O	NT_005580	AC132515	32844229	1	chr3	NT_005580	AC117943	32894295	1	34973	0	8679	43652
S/G/Y/R/B/O	NT_005580	AC132515	32844229	1			AC069423	32612190		10205	2385	24152	36742
S/G/Y/R/B/O	NT_005580	AC113170	32858347	1	chr3	NT_005580	AC117943	32894295	1	0	0	3798	3798
S/G/Y/R/B/O	NT_005580	AC117943	32894295	1	chr3	NT_005580	AC112220	33047207	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC117943	32894295	1	chr3	NT_005580	AC093114	32750883	3	25031	4450	11257	40738
S/G/Y/R/B/O	NT_005580	AC117943	32894295	1	chr3	NT_005580	AC122176	32612190	3	38489	4450	2192	45131
S/G/Y/R/B/O	NT_005580	AC117943	32894295	1	chr3	NT_005580	AC132515	32844229	1	34973	0	8679	43652
S/G/Y/R/B/O	NT_005580	AC117943	32894295	1			AC069423	32844229		33627	5667	15024	54318
S/G/Y/R/B/O	NT_005580	AC112220	33047207	3	chr3	NT_005580	AC123901	33199434	3	44501	0	0	44501
S/G/Y/R/B/O	NT_005580	AC112220	33047207	3			AC113168	32844229		126978	0	0	126978
S/G/Y/R/B/O	NT_005580	AC123901	33199434	3	chr3	NT_005580	AC099051	33372331	3	58673	0	0	58673
S/G/Y/R/B/O	NT_005580	AC099051	33372331	3	chr3	NT_005580	AC123023	33488021	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC099051	33372331	3			AC013569	33047207		64411	0	28036	92447
S/G/Y/R/B/O	NT_005580	AC123023	33488021	3	chr3	NT_005580	AC092023	33636201	3	50891	0	0	50891
S/G/Y/R/B/O	NT_005580	AC123023	33488021	3			AC013569	33199434		42140	1813	15424	59377
S/G/Y/R/B/O	NT_005580	AC092023	33636201	3	chr3	NT_005580	AC099776	33750009	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC099776	33750009	3	chr3	NT_005580	AC018359	33874583	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC018359	33874583	3	chr3	NT_005580	AC007483	33995797	3	42224	0	0	42224
S/G/Y/R/B/O	NT_005580	AC018359	33874583	3			AC092420	33995797		124272	0	0	124272
S/G/Y/R/B/O	NT_005580	AC007483	33995797	3	chr3	NT_005580	AC092054	34129747	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC007483	33995797	3			AC092420	33874583		101723	0	0	101723
S/G/Y/R/B/O	NT_005580	AC092054	34129747	3	chr3	NT_005580	AC112223	34279938	3	76782	0	0	76782
S/G/Y/R/B/O	NT_005580	AC092054	34129747	3			AC024079	33874583		19386	4256	17785	41427
S/G/Y/R/B/O	NT_005580	AC112223	34279938	3	chr3	NT_005580	AC093557	34369740	3	48556	0	0	48556
S/G/Y/R/B/O	NT_005580	AC093557	34369740	3	chr3	NT_005580	AC109585	34447282	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC093557	34369740	3			AC108486	34369740		79011	0	655	79666
S/G/Y/R/B/O	NT_005580	AC109585	34447282	3	chr3	NT_005580	AC096916	34639446	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC096916	34639446	3	chr3	NT_005580	AC092052	34708490	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC096916	34639446	3			AC018543	34279938		86675	0	27495	114170
S/G/Y/R/B/O	NT_005580	AC092052	34708490	3	chr3	NT_005580	AC016943	34911694	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC092052	34708490	3			AC018543	34279938		13220	0	0	13220
S/G/Y/R/B/O	NT_005580	AC092052	34708490	3			AC019329	34279938		15617	0	36853	52470
S/G/Y/R/B/O	NT_005580	AC016943	34911694	3	chr3	NT_005580	AC133143	35085228	3	3507	0	0	3507
S/G/Y/R/B/O	NT_005580	AC133143	35085228	3	chr3	NT_005580	AC104308	35089498	3	2644	0	0	2644
S/G/Y/R/B/O	NT_005580	AC104308	35089498	3	chr3	NT_005580	AC124974	35225620	3	16202	0	0	16202
S/G/Y/R/B/O	NT_005580	AC124974	35225620	3	chr3	NT_005580	AC124153	35242636	3	0	1866	0	1866
S/G/Y/R/B/O	NT_005580	AC124153	35242636	3	chr3	NT_005580	AC105901	35407027	3	0	1301	0	1301
S/G/Y/R/B/O	NT_005580	AC124153	35242636	3			AC018855	35242636		48386	0	21525	69911
S/G/Y/R/B/O	NT_005580	AC105901	35407027	3	chr3	NT_005580	AC126117	35593251	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC126117	35593251	3	chr3	NT_005580	AC092051	35664186	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AC092051	35664186	3	chr3	NT_005580	AC098648	35847777	3	44659	0	0	44659
S/G/Y/R/B/O	NT_005580	AC098648	35847777	3	chr3	NT_005580	AC105749	35955041	3	0	0	5297	5297
S/G/Y/R/B/O	NT_005580	AC098648	35847777	3			AC068979	35847777		46337	0	9202	55539
S/G/Y/R/B/O	NT_005580	AC105749	35955041	3	chr3	NT_005580	AC097360	36149759	3	142628	0	0	142628
S/G/Y/R/B/O	NT_005580	AC105749	35955041	3			AC068979	35955041		36475	6920	1963	45358
S/G/Y/R/B/O	NT_005580	AC097360	36149759	3	chr3	NT_005580	AC011816	36173193	3	9450	0	0	9450
S/G/Y/R/B/O	NT_005580	AC097360	36149759	3			AC068979	36173193		30381	0	743	31124
S/G/Y/R/B/O	NT_005580	AC011816	36173193	3	chr3	NT_005580	AC006583	36333056	3	2001	0	0	2001
S/G/Y/R/B/O	NT_005580	AC006583	36333056	3	chr3	NT_005580	AC126118	36431832	3	0	1593	0	1593
S/G/Y/R/B/O	NT_005580	AC006583	36333056	3			AL450991	36431832		15973	0	0	15973
S/G/Y/R/B/O	NT_005580	AC006583	36333056	3			AL450991	36431832		15973	0	0	15973
S/G/Y/R/B/O	NT_005580	AC126118	36431832	3	chr3	NT_005580	AC097359	36497592	3	3224	0	0	3224
S/G/Y/R/B/O	NT_005580	AC126118	36431832	3			AL450991	36497592		49057	0	0	49057
S/G/Y/R/B/O	NT_005580	AC097359	36497592	3	chr3	NT_005580	AP000493	36638565	3	42740	0	0	42740
S/G/Y/R/B/O	NT_005580	AC097359	36497592	3			AC136290	36431832		15755	0	58676	74431
S/G/Y/R/B/O	NT_005580	AC097359	36497592	3			AL450991	36431832		53714	2595	0	56309
S/G/Y/R/B/O	NT_005580	AP000493	36638565	3	chr3	NT_005580	AP000494	36838565	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AP000493	36638565	3			AC009813	36638565		77716	0	1531	79247
S/G/Y/R/B/O	NT_005580	AP000493	36638565	3			AC092055	36638565		124344	0	0	124344
S/G/Y/R/B/O	NT_005580	AP000493	36638565	3			AC136290	36497592		44092	0	0	44092
S/G/Y/R/B/O	NT_005580	AP000494	36838565	3	chr3	NT_005580	AP000495	37038565	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AP000494	36838565	3			AC009813	36497592		46206	0	0	46206
S/G/Y/R/B/O	NT_005580	AP000494	36838565	3			AC092055	36497592		28307	0	0	28307
S/G/Y/R/B/O	NT_005580	AP000494	36838565	3			AC093415	36497592		17313	0	0	17313
S/G/Y/R/B/O	NT_005580	AP000495	37038565	3	chr3	NT_005580	AP000496	37138565	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AP000495	37038565	3			AC093415	36497592		99420	0	0	99420
S/G/Y/R/B/O	NT_005580	AP000496	37138565	3	chr3	NT_005580	AP000497	37238565	3	0	0	0	0
S/G/Y/R/B/O	NT_005580	AP000496	37138565	3			AC046188	36497592		15226	15767	18676	49669
S/G/Y/R/B/O	NT_005580	AP000496	37138565	3			AC093415	36497592		77876	0	0	77876
S/G/Y/R/B/O	NT_005580	AP000496	37138565	3			AC105752	36497592		60300	0	0	60300
S/G/Y/R/B/O	NT_005580	AP000497	37238565	3	chr3	NT_005580	AB026898	37385161	3	13510	0	0	13510
S/G/Y/R/B/O	NT_005580	AP000497	37238565	3			AC105752	37385161		81493	0	0	81493
S/G/Y/R/B/O	NT_005580	AB026898	37385161	3	chr3	NT_005580	AP000500	37622625	3	37256	0	0	37256
S/G/Y/R/B/O	NT_005580	AB026898	37385161	3			AC026346	37385161		45240	2083	54404	101727
S/G/Y/R/B/O	NT_005580	AB026898	37385161	3			AC055722	37385161		17121	0	47793	64914
S/G/Y/R/B/O	NT_005580	AP000500	37622625	3
S/G/Y/R/B/O	NT_005580	AP000500	37622625	3			AC016156	37385161		20300	0	0	20300
S/G/Y/R/B/O	NT_005580	AP000500	37622625	3			AC055722	37385161		22954	0	31440	54394
S/G/Y/R/B/O	NT_005580	AP000500	37622625	3			AC092417	37385161		166770	0	0	166770