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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_025667 | AC078793 | 171909667 | 3 | chr3 | NT_025667 | AC092919 | 172062496 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_025667 | AC078793 | 171909667 | 3 |   |   | AC025027 | 171788538 | | 120356 | 9772 | 9608 | 139736 |
S/G/Y/R/B/O |
NT_025667 | AC078793 | 171909667 | 3 |   |   | AC098564 | 172062496 | | 42511 | 0 | 25054 | 67565 |
S/G/Y/R/B/O |
NT_025667 | AC092919 | 172062496 | 3 | chr3 | NT_025667 | AC008134 | 172161617 | 3 | 0 | 2013 | 0 | 2013 |
S/G/Y/R/B/O |
NT_025667 | AC092919 | 172062496 | 3 |   |   | AC026321 | 172161617 | | 11989 | 0 | 0 | 11989 |
S/G/Y/R/B/O |
NT_025667 | AC008134 | 172161617 | 3 | chr3 | NT_025667 | AC078953 | 172334735 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025667 | AC008134 | 172161617 | 3 |   |   | AC024714 | 171909667 | | 50001 | 0 | 0 | 50001 |
S/G/Y/R/B/O |
NT_025667 | AC008134 | 172161617 | 3 |   |   | AC026321 | 171909667 | | 62113 | 0 | 32947 | 95060 |
S/G/Y/R/B/O |
NT_025667 | AC078953 | 172334735 | 3 | chr3 | NT_025667 | AC055714 | 172492401 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_025667 | AC055714 | 172492401 | 3 | chr3 | NT_025667 | AC069259 | 172658190 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_025667 | AC055714 | 172492401 | 3 |   |   | AC016783 | 172492401 | | 75465 | 4460 | 39081 | 119006 |
S/G/Y/R/B/O |
NT_025667 | AC055714 | 172492401 | 3 |   |   | AC026312 | 172492401 | | 30415 | 0 | 0 | 30415 |
S/G/Y/R/B/O |
NT_025667 | AC055714 | 172492401 | 3 |   |   | AC026322 | 172492401 | | 79454 | 0 | 31317 | 110771 |
S/G/Y/R/B/O |
NT_025667 | AC055714 | 172492401 | 3 |   |   | AC073354 | 172658190 | | 167752 | 0 | 0 | 167752 |
S/G/Y/R/B/O |
NT_025667 | AC055714 | 172492401 | 3 |   |   | AC108712 | 172334735 | | 31146 | 0 | 5329 | 36475 |
S/G/Y/R/B/O |
NT_025667 | AC069259 | 172658190 | 3 | chr3 | NT_025667 | AC108668 | 172822720 | 1 | 50132 | 0 | 0 | 50132 |
S/G/Y/R/B/O |
NT_025667 | AC069259 | 172658190 | 3 |   |   | AC016783 | 172334735 | | 10870 | 2466 | 0 | 13336 |
S/G/Y/R/B/O |
NT_025667 | AC069259 | 172658190 | 3 |   |   | AC020649 | 172334735 | | 116252 | 0 | 24875 | 141127 |
S/G/Y/R/B/O |
NT_025667 | AC069259 | 172658190 | 3 |   |   | AC026312 | 172334735 | | 119053 | 0 | 0 | 119053 |
S/G/Y/R/B/O |
NT_025667 | AC108668 | 172822720 | 1 | chr3 | NT_025667 | AC092964 | 172897416 | 3 | 83409 | 0 | 0 | 83409 |
S/G/Y/R/B/O |
NT_025667 | AC108668 | 172822720 | 1 |   |   | AC020649 | 172822720 | | 31157 | 0 | 14233 | 45390 |
S/G/Y/R/B/O |
NT_025667 | AC092964 | 172897416 | 3 | chr3 | NT_025667 | AC069523 | 173010436 | 3 | 0 | 1974 | 0 | 1974 |
S/G/Y/R/B/O |
NT_025667 | AC069523 | 173010436 | 3 | chr3 | NT_025667 | AC016938 | 173156029 | 3 | 0 | 0 | 852 | 852 |
S/G/Y/R/B/O |
NT_025667 | AC069523 | 173010436 | 3 |   |   | AC015655 | 172822720 | | 16048 | 0 | 128945 | 144993 |
S/G/Y/R/B/O |
NT_025667 | AC016938 | 173156029 | 3 | chr3 | NT_025667 | AC007051 | 173195949 | 3 | 0 | 0 | 33107 | 33107 |
S/G/Y/R/B/O |
NT_025667 | AC007051 | 173195949 | 3 | chr3 | NT_025667 | AC007919 | 173330516 | 3 | 135897 | 0 | 0 | 135897 |
S/G/Y/R/B/O |
NT_025667 | AC007919 | 173330516 | 3 | chr3 | NT_025667 | AC069237 | 173379512 | 1 | 36941 | 4767 | 18567 | 60275 |
S/G/Y/R/B/O |
NT_025667 | AC069237 | 173379512 | 1 | chr3 | NT_025667 | AC108667 | 173454892 | 3 | 10820 | 0 | 22320 | 33140 |
S/G/Y/R/B/O |
NT_025667 | AC108667 | 173454892 | 3 | chr3 | NT_025667 | AC092948 | 173583548 | 3 | 2012 | 0 | 0 | 2012 |
S/G/Y/R/B/O |
NT_025667 | AC092948 | 173583548 | 3 | chr3 | NT_025667 | AC063933 | 173728126 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_025667 | AC092948 | 173583548 | 3 |   |   | AC026284 | 173583548 | | 64166 | 26280 | 18920 | 109366 |
S/G/Y/R/B/O |
NT_025667 | AC063933 | 173728126 | 3 | chr3 | NT_025667 | AC068758 | 173894506 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025667 | AC063933 | 173728126 | 3 |   |   | AC026284 | 173454892 | | 13152 | 1895 | 0 | 15047 |
S/G/Y/R/B/O |
NT_025667 | AC068758 | 173894506 | 3 | chr3 | NT_025667 | AC068759 | 173935908 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_025667 | AC068758 | 173894506 | 3 |   |   | AC053521 | 173583548 | | 10510 | 0 | 8820 | 19330 |
S/G/Y/R/B/O |
NT_025667 | AC068758 | 173894506 | 3 |   |   | AC092930 | 173935908 | | 10196 | 0 | 28089 | 38285 |
S/G/Y/R/B/O |
NT_025667 | AC068758 | 173894506 | 3 |   |   | AC092949 | 173935908 | | 18695 | 0 | 0 | 18695 |
S/G/Y/R/B/O |
NT_025667 | AC068759 | 173935908 | 3 | chr3 | NT_025667 | AC018456 | 174117265 | 3 | 4005 | 0 | 0 | 4005 |
S/G/Y/R/B/O |
NT_025667 | AC068759 | 173935908 | 3 |   |   | AC026287 | 174117265 | | 43534 | 0 | 23436 | 66970 |
S/G/Y/R/B/O |
NT_025667 | AC018456 | 174117265 | 3 | chr3 | NT_025667 | AC069531 | 174233710 | 1 | 7807 | 0 | 6553 | 14360 |
S/G/Y/R/B/O |
NT_025667 | AC018456 | 174117265 | 3 |   |   | AC012082 | 173894506 | | 114602 | 0 | 0 | 114602 |
S/G/Y/R/B/O |
NT_025667 | AC069531 | 174233710 | 1 | chr3 | NT_025667 | AC092935 | 174273877 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025667 | AC069531 | 174233710 | 1 | chr3 | NT_025667 | AC092967 | 174293578 | 3 | 76998 | 0 | 4196 | 81194 |
S/G/Y/R/B/O |
NT_025667 | AC069531 | 174233710 | 1 |   |   | AC012082 | 174233710 | | 30203 | 0 | 6550 | 36753 |
S/G/Y/R/B/O |
NT_025667 | AC069531 | 174233710 | 1 |   |   | AC026099 | 174117265 | | 30049 | 3927 | 13831 | 47807 |
S/G/Y/R/B/O |
NT_025667 | AC069531 | 174233710 | 1 |   |   | AC026870 | 174117265 | | 73144 | 1780 | 0 | 74924 |
S/G/Y/R/B/O |
NT_025667 | AC092935 | 174273877 | 3 | chr3 | NT_025667 | AC092967 | 174293578 | 3 | 2011 | 0 | 0 | 2011 |
S/G/Y/R/B/O |
NT_025667 | AC092967 | 174293578 | 3 | chr3 | NT_025667 | AC092923 | 174471415 | 3 | 2006 | 0 | 0 | 2006 |
S/G/Y/R/B/O |
NT_025667 | AC092967 | 174293578 | 3 | chr3 | NT_025667 | AC069531 | 174233710 | 1 | 76998 | 0 | 4196 | 81194 |
S/G/Y/R/B/O |
NT_025667 | AC092967 | 174293578 | 3 |   |   | AC026099 | 174293578 | | 80063 | 4059 | 17859 | 101981 |
S/G/Y/R/B/O |
NT_025667 | AC092967 | 174293578 | 3 |   |   | AC026870 | 174293578 | | 166340 | 1780 | 9974 | 178094 |
S/G/Y/R/B/O |
NT_025667 | AC092923 | 174471415 | 3 | chr3 | NT_025667 | AC110871 | 174619625 | 3 | 2005 | 0 | 0 | 2005 |
S/G/Y/R/B/O |
NT_025667 | AC110871 | 174619625 | 3 | chr3 | NT_025667 | AC131158 | 174714730 | 3 | 0 | 1922 | 0 | 1922 |
S/G/Y/R/B/O |
NT_025667 | AC110871 | 174619625 | 3 |   |   | AC092921 | 174619625 | | 41369 | 14169 | 18271 | 73809 |
S/G/Y/R/B/O |
NT_025667 | AC131158 | 174714730 | 3 | chr3 | NT_025667 | AC008082 | 174732809 | 3 | 0 | 1552 | 0 | 1552 |
S/G/Y/R/B/O |
NT_025667 | AC131158 | 174714730 | 3 |   |   | AC021870 | 174732809 | | 19993 | 0 | 0 | 19993 |
S/G/Y/R/B/O |
NT_025667 | AC131158 | 174714730 | 3 |   |   | AC092921 | 174732809 | | 18052 | 1377 | 0 | 19429 |
S/G/Y/R/B/O |
NT_025667 | AC008082 | 174732809 | 3 | chr3 | NT_025667 | AC008120 | 174902876 | 3 | 0 | 0 | 286 | 286 |
S/G/Y/R/B/O |
NT_025667 | AC008082 | 174732809 | 3 |   |   | AC021870 | 174902876 | | 116102 | 0 | 8284 | 124386 |
S/G/Y/R/B/O |
NT_025667 | AC008082 | 174732809 | 3 |   |   | AC073285 | 174902876 | | 76875 | 0 | 75702 | 152577 |
S/G/Y/R/B/O |
NT_025667 | AC008082 | 174732809 | 3 |   |   | AC092921 | 174902876 | | 33900 | 10456 | 0 | 44356 |
S/G/Y/R/B/O |
NT_025667 | AC008120 | 174902876 | 3 | chr3 | NT_025667 | AC069218 | 175041369 | 3 | 2003 | 0 | 0 | 2003 |
S/G/Y/R/B/O |
NT_025667 | AC008120 | 174902876 | 3 |   |   | AC068637 | 174732809 | | 44794 | 0 | 0 | 44794 |
S/G/Y/R/B/O |
NT_025667 | AC069218 | 175041369 | 3 | chr3 | NT_025667 | AC117431 | 175203370 | 3 | 0 | 0 | 1853 | 1853 |
S/G/Y/R/B/O |
NT_025667 | AC069218 | 175041369 | 3 |   |   | AC068637 | 174902876 | | 118506 | 0 | 0 | 118506 |
S/G/Y/R/B/O |
NT_025667 | AC117431 | 175203370 | 3 | chr3 | NT_025667 | AC063953 | 175214840 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_025667 | AC063953 | 175214840 | 3 | chr3 | NT_025667 | AC069427 | 175400099 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_025667 | AC063953 | 175214840 | 3 |   |   | AC016936 | 175041369 | | 67986 | 0 | 0 | 67986 |
S/G/Y/R/B/O |
NT_025667 | AC069427 | 175400099 | 3 | chr3 | NT_025667 | AC069418 | 175531956 | 3 | 0 | 1030 | 0 | 1030 |
S/G/Y/R/B/O |
NT_025667 | AC069427 | 175400099 | 3 |   |   | AC016936 | 175203370 | | 54497 | 0 | 31777 | 86274 |
S/G/Y/R/B/O |
NT_025667 | AC069427 | 175400099 | 3 |   |   | AC063954 | 175214840 | | 32789 | 2564 | 25698 | 61051 |
S/G/Y/R/B/O |
NT_025667 | AC069418 | 175531956 | 3 | chr3 | NT_025667 | AC078803 | 175677862 | 1 | 43083 | 0 | 18975 | 62058 |
S/G/Y/R/B/O |
NT_025667 | AC069418 | 175531956 | 3 |   |   | AC063954 | 175531956 | | 42716 | 0 | 3481 | 46197 |
S/G/Y/R/B/O |
NT_025667 | AC078803 | 175677862 | 1 | chr3 | NT_025667 | AC112510 | 175736147 | 1 | 34277 | 2132 | 4931 | 41340 |
S/G/Y/R/B/O |
NT_025667 | AC078803 | 175677862 | 1 |   |   | AC063954 | 175677862 | | 22390 | 0 | 6809 | 29199 |
S/G/Y/R/B/O |
NT_025667 | AC112510 | 175736147 | 1 | chr3 | NT_025667 | AC135037 | 175945389 | 3 | 0 | 0 | 22852 | 22852 |
S/G/Y/R/B/O |
NT_025667 | AC112510 | 175736147 | 1 |   |   | AC021681 | 175736147 | | 38115 | 3995 | 7356 | 49466 |
S/G/Y/R/B/O |
NT_025667 | AC112510 | 175736147 | 1 |   |   | AC107615 | 175677862 | | 42170 | 0 | 4399 | 46569 |
S/G/Y/R/B/O |
NT_025667 | AC112510 | 175736147 | 1 |   |   | AC113929 | 195361336 | | 54590 | 4447 | 19187 | 78224 |
S/G/Y/R/B/O |
NT_025667 | AC135037 | 175945389 | 3 | chr3 | NT_025667 | AC119732 | 176052677 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_025667 | AC135037 | 175945389 | 3 |   |   | AC021681 | 175945389 | | 68784 | 3809 | 2546 | 75139 |
S/G/Y/R/B/O |
NT_025667 | AC135037 | 175945389 | 3 |   |   | AC021681 | 175945389 | | 68784 | 3809 | 2546 | 75139 |
S/G/Y/R/B/O |
NT_025667 | AC135037 | 175945389 | 3 |   |   | AC107615 | 175945389 | | 44967 | 0 | 39338 | 84305 |
S/G/Y/R/B/O |
NT_025667 | AC135037 | 175945389 | 3 |   |   | AC107615 | 175945389 | | 44967 | 0 | 39338 | 84305 |
S/G/Y/R/B/O |
NT_025667 | AC135037 | 175945389 | 3 |   |   | AC113929 | 175736147 | | 13250 | 4307 | 6133 | 23690 |
S/G/Y/R/B/O |
NT_025667 | AC135037 | 175945389 | 3 |   |   | AC113929 | 175736147 | | 13250 | 4307 | 6133 | 23690 |
S/G/Y/R/B/O |
NT_025667 | AC119732 | 176052677 | 3 | chr3 | NT_025667 | AC008180 | 176141360 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025667 | AC119732 | 176052677 | 3 |   |   | AC107615 | 176052677 | | 30424 | 0 | 0 | 30424 |
S/G/Y/R/B/O |
NT_025667 | AC008180 | 176141360 | 3 | chr3 | NT_025667 | AC083804 | 176334395 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_025667 | AC083804 | 176334395 | 3 | chr3 | NT_025667 | AC119744 | 176439373 | 3 | 2058 | 0 | 0 | 2058 |
S/G/Y/R/B/O |
NT_025667 | AC119744 | 176439373 | 3 | chr3 | NT_025667 | AC119040 | 176535691 | 3 | 2004 | 0 | 0 | 2004 |
S/G/Y/R/B/O |
NT_025667 | AC119744 | 176439373 | 3 |   |   | AL354922 | 176535691 | | 78627 | 0 | 3989 | 82616 |
S/G/Y/R/B/O |
NT_025667 | AC119040 | 176535691 | 3 | chr3 | NT_025667 | AC104150 | 176571075 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025667 | AC119040 | 176535691 | 3 |   |   | AL354922 | 176439373 | | 11892 | 1316 | 11458 | 24666 |
S/G/Y/R/B/O |
NT_025667 | AC104150 | 176571075 | 3 | chr3 | NT_025667 | AC104640 | 176731925 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025667 | AC104150 | 176571075 | 3 |   |   | AC068566 | 176439373 | | 12671 | 0 | 0 | 12671 |
S/G/Y/R/B/O |
NT_025667 | AC104150 | 176571075 | 3 |   |   | AL354922 | 176439373 | | 26269 | 2020 | 0 | 28289 |
S/G/Y/R/B/O |
NT_025667 | AC104640 | 176731925 | 3 | chr3 | NT_025667 | AC117434 | 176885388 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_025667 | AC104640 | 176731925 | 3 |   |   | AC068566 | 176439373 | | 24485 | 8639 | 33262 | 66386 |
S/G/Y/R/B/O |
NT_025667 | AC117434 | 176885388 | 3 | chr3 | NT_025667 | AC078981 | 176925637 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_025667 | AC078981 | 176925637 | 3 | chr3 | NT_025667 | AC092970 | 177084213 | 3 | 2106 | 0 | 0 | 2106 |
S/G/Y/R/B/O |
NT_025667 | AC092970 | 177084213 | 3 |   |   |   |   |   |   |   |   |   |
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