Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_025667

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_025667	AC078793	171909667	3	chr3	NT_025667	AC092919	172062496	3	0	1999	0	1999
S/G/Y/R/B/O	NT_025667	AC078793	171909667	3			AC025027	171788538		120356	9772	9608	139736
S/G/Y/R/B/O	NT_025667	AC078793	171909667	3			AC098564	172062496		42511	0	25054	67565
S/G/Y/R/B/O	NT_025667	AC092919	172062496	3	chr3	NT_025667	AC008134	172161617	3	0	2013	0	2013
S/G/Y/R/B/O	NT_025667	AC092919	172062496	3			AC026321	172161617		11989	0	0	11989
S/G/Y/R/B/O	NT_025667	AC008134	172161617	3	chr3	NT_025667	AC078953	172334735	3	0	0	0	0
S/G/Y/R/B/O	NT_025667	AC008134	172161617	3			AC024714	171909667		50001	0	0	50001
S/G/Y/R/B/O	NT_025667	AC008134	172161617	3			AC026321	171909667		62113	0	32947	95060
S/G/Y/R/B/O	NT_025667	AC078953	172334735	3	chr3	NT_025667	AC055714	172492401	3	0	1999	0	1999
S/G/Y/R/B/O	NT_025667	AC055714	172492401	3	chr3	NT_025667	AC069259	172658190	3	2000	0	0	2000
S/G/Y/R/B/O	NT_025667	AC055714	172492401	3			AC016783	172492401		75465	4460	39081	119006
S/G/Y/R/B/O	NT_025667	AC055714	172492401	3			AC026312	172492401		30415	0	0	30415
S/G/Y/R/B/O	NT_025667	AC055714	172492401	3			AC026322	172492401		79454	0	31317	110771
S/G/Y/R/B/O	NT_025667	AC055714	172492401	3			AC073354	172658190		167752	0	0	167752
S/G/Y/R/B/O	NT_025667	AC055714	172492401	3			AC108712	172334735		31146	0	5329	36475
S/G/Y/R/B/O	NT_025667	AC069259	172658190	3	chr3	NT_025667	AC108668	172822720	1	50132	0	0	50132
S/G/Y/R/B/O	NT_025667	AC069259	172658190	3			AC016783	172334735		10870	2466	0	13336
S/G/Y/R/B/O	NT_025667	AC069259	172658190	3			AC020649	172334735		116252	0	24875	141127
S/G/Y/R/B/O	NT_025667	AC069259	172658190	3			AC026312	172334735		119053	0	0	119053
S/G/Y/R/B/O	NT_025667	AC108668	172822720	1	chr3	NT_025667	AC092964	172897416	3	83409	0	0	83409
S/G/Y/R/B/O	NT_025667	AC108668	172822720	1			AC020649	172822720		31157	0	14233	45390
S/G/Y/R/B/O	NT_025667	AC092964	172897416	3	chr3	NT_025667	AC069523	173010436	3	0	1974	0	1974
S/G/Y/R/B/O	NT_025667	AC069523	173010436	3	chr3	NT_025667	AC016938	173156029	3	0	0	852	852
S/G/Y/R/B/O	NT_025667	AC069523	173010436	3			AC015655	172822720		16048	0	128945	144993
S/G/Y/R/B/O	NT_025667	AC016938	173156029	3	chr3	NT_025667	AC007051	173195949	3	0	0	33107	33107
S/G/Y/R/B/O	NT_025667	AC007051	173195949	3	chr3	NT_025667	AC007919	173330516	3	135897	0	0	135897
S/G/Y/R/B/O	NT_025667	AC007919	173330516	3	chr3	NT_025667	AC069237	173379512	1	36941	4767	18567	60275
S/G/Y/R/B/O	NT_025667	AC069237	173379512	1	chr3	NT_025667	AC108667	173454892	3	10820	0	22320	33140
S/G/Y/R/B/O	NT_025667	AC108667	173454892	3	chr3	NT_025667	AC092948	173583548	3	2012	0	0	2012
S/G/Y/R/B/O	NT_025667	AC092948	173583548	3	chr3	NT_025667	AC063933	173728126	3	0	2000	0	2000
S/G/Y/R/B/O	NT_025667	AC092948	173583548	3			AC026284	173583548		64166	26280	18920	109366
S/G/Y/R/B/O	NT_025667	AC063933	173728126	3	chr3	NT_025667	AC068758	173894506	3	0	0	0	0
S/G/Y/R/B/O	NT_025667	AC063933	173728126	3			AC026284	173454892		13152	1895	0	15047
S/G/Y/R/B/O	NT_025667	AC068758	173894506	3	chr3	NT_025667	AC068759	173935908	3	2000	0	0	2000
S/G/Y/R/B/O	NT_025667	AC068758	173894506	3			AC053521	173583548		10510	0	8820	19330
S/G/Y/R/B/O	NT_025667	AC068758	173894506	3			AC092930	173935908		10196	0	28089	38285
S/G/Y/R/B/O	NT_025667	AC068758	173894506	3			AC092949	173935908		18695	0	0	18695
S/G/Y/R/B/O	NT_025667	AC068759	173935908	3	chr3	NT_025667	AC018456	174117265	3	4005	0	0	4005
S/G/Y/R/B/O	NT_025667	AC068759	173935908	3			AC026287	174117265		43534	0	23436	66970
S/G/Y/R/B/O	NT_025667	AC018456	174117265	3	chr3	NT_025667	AC069531	174233710	1	7807	0	6553	14360
S/G/Y/R/B/O	NT_025667	AC018456	174117265	3			AC012082	173894506		114602	0	0	114602
S/G/Y/R/B/O	NT_025667	AC069531	174233710	1	chr3	NT_025667	AC092935	174273877	3	0	0	0	0
S/G/Y/R/B/O	NT_025667	AC069531	174233710	1	chr3	NT_025667	AC092967	174293578	3	76998	0	4196	81194
S/G/Y/R/B/O	NT_025667	AC069531	174233710	1			AC012082	174233710		30203	0	6550	36753
S/G/Y/R/B/O	NT_025667	AC069531	174233710	1			AC026099	174117265		30049	3927	13831	47807
S/G/Y/R/B/O	NT_025667	AC069531	174233710	1			AC026870	174117265		73144	1780	0	74924
S/G/Y/R/B/O	NT_025667	AC092935	174273877	3	chr3	NT_025667	AC092967	174293578	3	2011	0	0	2011
S/G/Y/R/B/O	NT_025667	AC092967	174293578	3	chr3	NT_025667	AC092923	174471415	3	2006	0	0	2006
S/G/Y/R/B/O	NT_025667	AC092967	174293578	3	chr3	NT_025667	AC069531	174233710	1	76998	0	4196	81194
S/G/Y/R/B/O	NT_025667	AC092967	174293578	3			AC026099	174293578		80063	4059	17859	101981
S/G/Y/R/B/O	NT_025667	AC092967	174293578	3			AC026870	174293578		166340	1780	9974	178094
S/G/Y/R/B/O	NT_025667	AC092923	174471415	3	chr3	NT_025667	AC110871	174619625	3	2005	0	0	2005
S/G/Y/R/B/O	NT_025667	AC110871	174619625	3	chr3	NT_025667	AC131158	174714730	3	0	1922	0	1922
S/G/Y/R/B/O	NT_025667	AC110871	174619625	3			AC092921	174619625		41369	14169	18271	73809
S/G/Y/R/B/O	NT_025667	AC131158	174714730	3	chr3	NT_025667	AC008082	174732809	3	0	1552	0	1552
S/G/Y/R/B/O	NT_025667	AC131158	174714730	3			AC021870	174732809		19993	0	0	19993
S/G/Y/R/B/O	NT_025667	AC131158	174714730	3			AC092921	174732809		18052	1377	0	19429
S/G/Y/R/B/O	NT_025667	AC008082	174732809	3	chr3	NT_025667	AC008120	174902876	3	0	0	286	286
S/G/Y/R/B/O	NT_025667	AC008082	174732809	3			AC021870	174902876		116102	0	8284	124386
S/G/Y/R/B/O	NT_025667	AC008082	174732809	3			AC073285	174902876		76875	0	75702	152577
S/G/Y/R/B/O	NT_025667	AC008082	174732809	3			AC092921	174902876		33900	10456	0	44356
S/G/Y/R/B/O	NT_025667	AC008120	174902876	3	chr3	NT_025667	AC069218	175041369	3	2003	0	0	2003
S/G/Y/R/B/O	NT_025667	AC008120	174902876	3			AC068637	174732809		44794	0	0	44794
S/G/Y/R/B/O	NT_025667	AC069218	175041369	3	chr3	NT_025667	AC117431	175203370	3	0	0	1853	1853
S/G/Y/R/B/O	NT_025667	AC069218	175041369	3			AC068637	174902876		118506	0	0	118506
S/G/Y/R/B/O	NT_025667	AC117431	175203370	3	chr3	NT_025667	AC063953	175214840	3	0	1998	0	1998
S/G/Y/R/B/O	NT_025667	AC063953	175214840	3	chr3	NT_025667	AC069427	175400099	3	2000	0	0	2000
S/G/Y/R/B/O	NT_025667	AC063953	175214840	3			AC016936	175041369		67986	0	0	67986
S/G/Y/R/B/O	NT_025667	AC069427	175400099	3	chr3	NT_025667	AC069418	175531956	3	0	1030	0	1030
S/G/Y/R/B/O	NT_025667	AC069427	175400099	3			AC016936	175203370		54497	0	31777	86274
S/G/Y/R/B/O	NT_025667	AC069427	175400099	3			AC063954	175214840		32789	2564	25698	61051
S/G/Y/R/B/O	NT_025667	AC069418	175531956	3	chr3	NT_025667	AC078803	175677862	1	43083	0	18975	62058
S/G/Y/R/B/O	NT_025667	AC069418	175531956	3			AC063954	175531956		42716	0	3481	46197
S/G/Y/R/B/O	NT_025667	AC078803	175677862	1	chr3	NT_025667	AC112510	175736147	1	34277	2132	4931	41340
S/G/Y/R/B/O	NT_025667	AC078803	175677862	1			AC063954	175677862		22390	0	6809	29199
S/G/Y/R/B/O	NT_025667	AC112510	175736147	1	chr3	NT_025667	AC135037	175945389	3	0	0	22852	22852
S/G/Y/R/B/O	NT_025667	AC112510	175736147	1			AC021681	175736147		38115	3995	7356	49466
S/G/Y/R/B/O	NT_025667	AC112510	175736147	1			AC107615	175677862		42170	0	4399	46569
S/G/Y/R/B/O	NT_025667	AC112510	175736147	1			AC113929	195361336		54590	4447	19187	78224
S/G/Y/R/B/O	NT_025667	AC135037	175945389	3	chr3	NT_025667	AC119732	176052677	3	2004	0	0	2004
S/G/Y/R/B/O	NT_025667	AC135037	175945389	3			AC021681	175945389		68784	3809	2546	75139
S/G/Y/R/B/O	NT_025667	AC135037	175945389	3			AC021681	175945389		68784	3809	2546	75139
S/G/Y/R/B/O	NT_025667	AC135037	175945389	3			AC107615	175945389		44967	0	39338	84305
S/G/Y/R/B/O	NT_025667	AC135037	175945389	3			AC107615	175945389		44967	0	39338	84305
S/G/Y/R/B/O	NT_025667	AC135037	175945389	3			AC113929	175736147		13250	4307	6133	23690
S/G/Y/R/B/O	NT_025667	AC135037	175945389	3			AC113929	175736147		13250	4307	6133	23690
S/G/Y/R/B/O	NT_025667	AC119732	176052677	3	chr3	NT_025667	AC008180	176141360	3	0	0	0	0
S/G/Y/R/B/O	NT_025667	AC119732	176052677	3			AC107615	176052677		30424	0	0	30424
S/G/Y/R/B/O	NT_025667	AC008180	176141360	3	chr3	NT_025667	AC083804	176334395	3	2001	0	0	2001
S/G/Y/R/B/O	NT_025667	AC083804	176334395	3	chr3	NT_025667	AC119744	176439373	3	2058	0	0	2058
S/G/Y/R/B/O	NT_025667	AC119744	176439373	3	chr3	NT_025667	AC119040	176535691	3	2004	0	0	2004
S/G/Y/R/B/O	NT_025667	AC119744	176439373	3			AL354922	176535691		78627	0	3989	82616
S/G/Y/R/B/O	NT_025667	AC119040	176535691	3	chr3	NT_025667	AC104150	176571075	3	0	0	0	0
S/G/Y/R/B/O	NT_025667	AC119040	176535691	3			AL354922	176439373		11892	1316	11458	24666
S/G/Y/R/B/O	NT_025667	AC104150	176571075	3	chr3	NT_025667	AC104640	176731925	3	0	0	0	0
S/G/Y/R/B/O	NT_025667	AC104150	176571075	3			AC068566	176439373		12671	0	0	12671
S/G/Y/R/B/O	NT_025667	AC104150	176571075	3			AL354922	176439373		26269	2020	0	28289
S/G/Y/R/B/O	NT_025667	AC104640	176731925	3	chr3	NT_025667	AC117434	176885388	3	0	0	0	0
S/G/Y/R/B/O	NT_025667	AC104640	176731925	3			AC068566	176439373		24485	8639	33262	66386
S/G/Y/R/B/O	NT_025667	AC117434	176885388	3	chr3	NT_025667	AC078981	176925637	3	2001	0	0	2001
S/G/Y/R/B/O	NT_025667	AC078981	176925637	3	chr3	NT_025667	AC092970	177084213	3	2106	0	0	2106
S/G/Y/R/B/O	NT_025667	AC092970	177084213	3