Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_005999

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_005999	AC021400	60398572	1	chr3	NT_005999	AC098480	60399848	3	99834	5780	26578	132192
S/G/Y/R/B/O	NT_005999	AC021400	60398572	1	chr3	NT_005999	AC097357	60588529	3	32992	0	0	32992
S/G/Y/R/B/O	NT_005999	AC021400	60398572	1			AC013250	59868260		111365	5209	21568	138142
S/G/Y/R/B/O	NT_005999	AC021400	60398572	1			AC073064	59868260		21827	1502	8074	31403
S/G/Y/R/B/O	NT_005999	AC098480	60399848	3	chr3	NT_005999	AC097357	60588529	3	70349	0	0	70349
S/G/Y/R/B/O	NT_005999	AC098480	60399848	3			AC013250	60399848		62864	0	26781	89645
S/G/Y/R/B/O	NT_005999	AC098480	60399848	3			AC073064	60398572		51295	0	7980	59275
S/G/Y/R/B/O	NT_005999	AC097357	60588529	3	chr3	NT_005999	AC114398	60680456	3	27696	0	0	27696
S/G/Y/R/B/O	NT_005999	AC097357	60588529	3	chr3	NT_005999	AC021400	60398572	1	32992	0	0	32992
S/G/Y/R/B/O	NT_005999	AC097357	60588529	3			AC073064	60398572		79902	0	8012	87914
S/G/Y/R/B/O	NT_005999	AC114398	60680456	3	chr3	NT_005999	AC103587	60842325	3	0	0	0	0
S/G/Y/R/B/O	NT_005999	AC114398	60680456	3			AC073064	60680456		12464	0	0	12464
S/G/Y/R/B/O	NT_005999	AC103587	60842325	3	chr3	NT_005999	AC103921	60976246	3	0	0	89731	89731
S/G/Y/R/B/O	NT_005999	AC103921	60976246	3	chr3	NT_005999	AC096919	61042115	3	40969	0	0	40969
S/G/Y/R/B/O	NT_005999	AC096919	61042115	3	chr3	NT_005999	AC098482	61167122	3	7720	0	0	7720
S/G/Y/R/B/O	NT_005999	AC096919	61042115	3			AC068168	60842325		65770	2982	0	68752
S/G/Y/R/B/O	NT_005999	AC096919	61042115	3			AC069295	60842325		39356	0	11380	50736
S/G/Y/R/B/O	NT_005999	AC098482	61167122	3	chr3	NT_005999	AC004695	61336800	3	41830	0	0	41830
S/G/Y/R/B/O	NT_005999	AC098482	61167122	3			AC022331	61336800		63776	2486	0	66262
S/G/Y/R/B/O	NT_005999	AC098482	61167122	3			AC068168	61336800		95827	2451	1102	99380
S/G/Y/R/B/O	NT_005999	AC098482	61167122	3			AC069295	61336800		43293	2270	46738	92301
S/G/Y/R/B/O	NT_005999	AC004695	61336800	3	chr3	NT_005999	AC104849	61486372	3	41876	0	0	41876
S/G/Y/R/B/O	NT_005999	AC004695	61336800	3			AC022331	61042115		52398	0	0	52398
S/G/Y/R/B/O	NT_005999	AC104849	61486372	3	chr3	NT_005999	AC105939	61610196	3	78018	0	0	78018
S/G/Y/R/B/O	NT_005999	AC105939	61610196	3	chr3	NT_005999	AC092502	61629499	3	11287	0	0	11287
S/G/Y/R/B/O	NT_005999	AC092502	61629499	3	chr3	NT_005999	AC104161	61770270	3	4525	0	0	4525
S/G/Y/R/B/O	NT_005999	AC092502	61629499	3			AC074017	61486372		54063	2831	19656	76550
S/G/Y/R/B/O	NT_005999	AC104161	61770270	3	chr3	NT_005999	AC092039	61936929	3	36053	0	0	36053
S/G/Y/R/B/O	NT_005999	AC104161	61770270	3			AC018899	61610196		83264	2926	0	86190
S/G/Y/R/B/O	NT_005999	AC104161	61770270	3			AC074017	61610196		33339	0	14589	47928
S/G/Y/R/B/O	NT_005999	AC092039	61936929	3	chr3	NT_005999	AC124860	62067416	3	0	1454	0	1454
S/G/Y/R/B/O	NT_005999	AC092039	61936929	3			AC018899	61629499		111293	3281	15028	129602
S/G/Y/R/B/O	NT_005999	AC124860	62067416	3	chr3	NT_005999	AC012519	62105312	3	3296	0	0	3296
S/G/Y/R/B/O	NT_005999	AC012519	62105312	3	chr3	NT_005999	AC096915	62286448	3	44066	0	0	44066
S/G/Y/R/B/O	NT_005999	AC012519	62105312	3			AC093115	61936929		173128	0	0	173128
S/G/Y/R/B/O	NT_005999	AC096915	62286448	3	chr3	NT_005999	AC104299	62412512	3	8192	0	0	8192
S/G/Y/R/B/O	NT_005999	AC096915	62286448	3			AC093115	62105312		33147	0	0	33147
S/G/Y/R/B/O	NT_005999	AC104299	62412512	3	chr3	NT_005999	AC099545	62577266	3	8487	0	0	8487
S/G/Y/R/B/O	NT_005999	AC104299	62412512	3			AC068372	62412512		34741	0	9185	43926
S/G/Y/R/B/O	NT_005999	AC099545	62577266	3	chr3	NT_005999	AC099056	62707071	3	0	0	0	0
S/G/Y/R/B/O	NT_005999	AC099545	62577266	3			AC068171	62577266		51755	6012	956	58723
S/G/Y/R/B/O	NT_005999	AC099545	62577266	3			AC068372	62577266		45340	6084	0	51424
S/G/Y/R/B/O	NT_005999	AC099545	62577266	3			AC072020	62577266		16014	2342	10085	28441
S/G/Y/R/B/O	NT_005999	AC099056	62707071	3	chr3	NT_005999	AC104436	62889476	3	15588	0	0	15588
S/G/Y/R/B/O	NT_005999	AC099056	62707071	3			AC068171	62412512		73123	19084	4365	96572
S/G/Y/R/B/O	NT_005999	AC099056	62707071	3			AC072020	62412512		67295	4172	12823	84290
S/G/Y/R/B/O	NT_005999	AC104436	62889476	3	chr3	NT_005999	AC136289	63020652	1	59827	0	9643	69470
S/G/Y/R/B/O	NT_005999	AC136289	63020652	1	chr3	NT_005999	AC104162	63111460	3	3683	0	41124	44807
S/G/Y/R/B/O	NT_005999	AC136289	63020652	1			AC112199	62889476		92339	0	3296	95635
S/G/Y/R/B/O	NT_005999	AC104162	63111460	3	chr3	NT_005999	AC012557	63231141	3	58616	0	0	58616
S/G/Y/R/B/O	NT_005999	AC104162	63111460	3			AC063925	63231141		12580	2117	7628	22325
S/G/Y/R/B/O	NT_005999	AC104162	63111460	3			AC092049	63231141		37622	0	0	37622
S/G/Y/R/B/O	NT_005999	AC104162	63111460	3			AC098569	63231141		96411	3925	0	100336
S/G/Y/R/B/O	NT_005999	AC104162	63111460	3			AC112199	63231141		41072	0	82875	123947
S/G/Y/R/B/O	NT_005999	AC012557	63231141	3	chr3	NT_005999	AC134771	63420361	3	3211	0	0	3211
S/G/Y/R/B/O	NT_005999	AC012557	63231141	3			AC063925	63020652		103764	2197	30215	136176
S/G/Y/R/B/O	NT_005999	AC012557	63231141	3			AC092049	63020652		39646	0	149628	189274
S/G/Y/R/B/O	NT_005999	AC012557	63231141	3			AC098569	63020652		107499	0	0	107499
S/G/Y/R/B/O	NT_005999	AC134771	63420361	3	chr3	NT_005999	AC092040	63440808	3	0	1932	0	1932
S/G/Y/R/B/O	NT_005999	AC092040	63440808	3	chr3	NT_005999	AC092419	63611985	1	130874	0	0	130874
S/G/Y/R/B/O	NT_005999	AC092040	63440808	3			AC007944	63440808		130272	0	535	130807
S/G/Y/R/B/O	NT_005999	AC092040	63440808	3			AC018656	63440808		90914	3775	3061	97750
S/G/Y/R/B/O	NT_005999	AC092040	63440808	3			AC021875	63440808		20678	0	0	20678
S/G/Y/R/B/O	NT_005999	AC092040	63440808	3			AC079314	63440808		26359	9767	6801	42927
S/G/Y/R/B/O	NT_005999	AC092040	63440808	3			AC118548	63611985		79949	0	763	80712
S/G/Y/R/B/O	NT_005999	AC092419	63611985	1	chr3	NT_005999	AC103557	63626317	3	14041	0	0	14041
S/G/Y/R/B/O	NT_005999	AC092419	63611985	1			AC007944	63420361		134651	0	14677	149328
S/G/Y/R/B/O	NT_005999	AC092419	63611985	1			AC018656	63420361		62084	3775	3061	68920
S/G/Y/R/B/O	NT_005999	AC092419	63611985	1			AC021875	63420361		44820	0	0	44820
S/G/Y/R/B/O	NT_005999	AC092419	63611985	1			AC079314	63420361		23193	5275	9540	38008
S/G/Y/R/B/O	NT_005999	AC092419	63611985	1			AC118548	63626317		108153	0	763	108916
S/G/Y/R/B/O	NT_005999	AC092419	63611985	1			AC136275	63626317		18343	0	0	18343
S/G/Y/R/B/O	NT_005999	AC103557	63626317	3	chr3	NT_005999	AC096888	63785383	3	5326	0	0	5326
S/G/Y/R/B/O	NT_005999	AC103557	63626317	3			AC007944	63626317		13911	0	0	13911
S/G/Y/R/B/O	NT_005999	AC103557	63626317	3			AC021875	63626317		82594	3180	9576	95350
S/G/Y/R/B/O	NT_005999	AC103557	63626317	3			AC118548	63785383		31862	1487	0	33349
S/G/Y/R/B/O	NT_005999	AC096888	63785383	3	chr3	NT_005999	AC122178	63945346	3	11118	0	0	11118
S/G/Y/R/B/O	NT_005999	AC122178	63945346	3	chr3	NT_005999	AC008583	64111297	3	35925	0	0	35925
S/G/Y/R/B/O	NT_005999	AC008583	64111297	3	chr3	NT_005999	AC121766	64233894	1	24700	0	5360	30060
S/G/Y/R/B/O	NT_005999	AC008583	64111297	3			AC015475	63785383		11683	0	0	11683
S/G/Y/R/B/O	NT_005999	AC008583	64111297	3			AC015521	63785383		77692	0	0	77692
S/G/Y/R/B/O	NT_005999	AC121766	64233894	1	chr3	NT_005999	AC068089	64234214	1	98097	8864	6214	113175
S/G/Y/R/B/O	NT_005999	AC121766	64233894	1			AC015475	64111297		124515	1746	5460	131721
S/G/Y/R/B/O	NT_005999	AC121766	64233894	1			AC015521	64111297		113639	11882	3395	128916
S/G/Y/R/B/O	NT_005999	AC068089	64234214	1	chr3	NT_005999	AC132007	64386485	3	25433	6124	5930	37487
S/G/Y/R/B/O	NT_005999	AC068089	64234214	1			AC015475	64234214		84025	18263	13027	115315
S/G/Y/R/B/O	NT_005999	AC068089	64234214	1			AC015521	64234214		71633	11741	7310	90684
S/G/Y/R/B/O	NT_005999	AC132007	64386485	3	chr3	NT_005999	AC104331	64456185	3	0	1929	0	1929
S/G/Y/R/B/O	NT_005999	AC104331	64456185	3	chr3	NT_005999	AC121493	64655301	3	43784	0	0	43784
S/G/Y/R/B/O	NT_005999	AC121493	64655301	3	chr3	NT_005999	AC112516	64790156	3	52275	0	0	52275
S/G/Y/R/B/O	NT_005999	AC112516	64790156	3	chr3	NT_005999	AC104438	64922749	3	0	0	0	0
S/G/Y/R/B/O	NT_005999	AC104438	64922749	3	chr3	NT_005999	AC133438	65030444	3	0	0	1831	1831
S/G/Y/R/B/O	NT_005999	AC104438	64922749	3	chr3	NT_005999	AC132809	65035864	1	114458	0	0	114458
S/G/Y/R/B/O	NT_005999	AC133438	65030444	3	chr3	NT_005999	AC132809	65035864	1	0	0	0	0
S/G/Y/R/B/O	NT_005999	AC132809	65035864	1	chr3	NT_005999	AC099058	65083997	3	12662	0	0	12662
S/G/Y/R/B/O	NT_005999	AC132809	65035864	1	chr3	NT_005999	AC104438	64922749	3	114458	0	0	114458
S/G/Y/R/B/O	NT_005999	AC099058	65083997	3	chr3	NT_005999	AC025589	65280620	3	0	0	83332	83332
S/G/Y/R/B/O	NT_005999	AC025589	65280620	3	chr3	NT_005999	AC106827	65369641	3	62881	0	0	62881
S/G/Y/R/B/O	NT_005999	AC106827	65369641	3