Chromosome 3 - Clone Overlaps

Chromosome 3 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037561	NT_005927	NT_028123	NT_006044	NT_037562	NT_022517	NT_005762	NT_037564
NT_005646	NT_034532	NT_005580	NT_034533	NT_005498	NT_037565	NT_005825	NT_022567
NT_037566	NT_034535	NT_022439	NT_006014	NT_033032	NT_037567	NT_005986	NT_033038
NT_034652	NT_037568	NT_005787	NT_005607	NT_037569	NT_005999	NT_022473	NT_022423
NT_037570	NT_037571	NT_005526	NT_037572	NT_022446	NT_005882	NT_005684	NT_022459
NT_006031	NT_022419	NT_022642	NT_022435	NT_022497	NT_037573	NT_022475	NT_033050
NT_033041	NT_037574	NT_005863	NT_022454	NT_037575	NT_025670	NT_022434	NT_005795
NT_015150	NT_022445	NT_005994	NT_005513	NT_037577	NT_037578	NT_005543	NT_005588
NT_037579	NT_037580	NT_022513	NT_033014	NT_006025	NT_005823	NT_037581	NT_022393
NT_005824	NT_037582	NT_037583	NT_034552	NT_025663	NT_034554	NT_005567	NT_025664
NT_005832	NT_019358	NT_005775	NT_005612	NT_022463	NT_022594	NT_022421	NT_022518
NT_005638	NT_034563	NT_025667	NT_022509	NT_034565	NT_022396	NT_022676	NT_029253
NT_037584	NT_005962	NT_033013	NT_029928	NT_037585	NT_005535	NT_022508	NT_037586

NT_005795

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_005795	AC078858	108830688	3	chr3	NT_005795	AC078980	108926986	3	0	0	1761	1761
S/G/Y/R/B/O	NT_005795	AC078858	108830688	3			AC074248	108589401		72214	0	12340	84554
S/G/Y/R/B/O	NT_005795	AC078980	108926986	3	chr3	NT_005795	AC068781	109067102	3	0	0	0	0
S/G/Y/R/B/O	NT_005795	AC078980	108926986	3			AC067764	108926986		20128	0	14076	34204
S/G/Y/R/B/O	NT_005795	AC078980	108926986	3			AC074342	108926986		54984	0	0	54984
S/G/Y/R/B/O	NT_005795	AC068781	109067102	3	chr3	NT_005795	AC078918	109262994	3	0	0	207	207
S/G/Y/R/B/O	NT_005795	AC068781	109067102	3			AC067764	108830688		27999	4653	50524	83176
S/G/Y/R/B/O	NT_005795	AC068781	109067102	3			AC068365	108830688		16237	0	1242	17479
S/G/Y/R/B/O	NT_005795	AC078918	109262994	3	chr3	NT_005795	AC073360	109339075	3	0	2067	0	2067
S/G/Y/R/B/O	NT_005795	AC078918	109262994	3			AC068365	109262994		32370	10283	1090	43743
S/G/Y/R/B/O	NT_005795	AC078918	109262994	3			AC092895	109339075		42871	0	0	42871
S/G/Y/R/B/O	NT_005795	AC073360	109339075	3	chr3	NT_005795	AC117424	109384905	3	0	0	1688	1688
S/G/Y/R/B/O	NT_005795	AC073360	109339075	3			AC068365	109339075		41296	599	4394	46289
S/G/Y/R/B/O	NT_005795	AC117424	109384905	3	chr3	NT_005795	AC106716	109519336	3	86607	0	0	86607
S/G/Y/R/B/O	NT_005795	AC117424	109384905	3			AC021742	109384905		56932	0	0	56932
S/G/Y/R/B/O	NT_005795	AC117424	109384905	3			AC108694	109519336		35585	0	0	35585
S/G/Y/R/B/O	NT_005795	AC106716	109519336	3	chr3	NT_005795	AC117471	109585468	3	0	0	0	0
S/G/Y/R/B/O	NT_005795	AC106716	109519336	3			AC021742	109519336		75255	0	47381	122636
S/G/Y/R/B/O	NT_005795	AC117471	109585468	3	chr3	NT_005795	AC112506	109665535	3	0	1915	0	1915
S/G/Y/R/B/O	NT_005795	AC117471	109585468	3			AC079984	110849658		36174	2618	21824	60616
S/G/Y/R/B/O	NT_005795	AC112506	109665535	3	chr3	NT_005795	AC117430	109778899	3	0	2000	0	2000
S/G/Y/R/B/O	NT_005795	AC112506	109665535	3			AC079984	109665535		14320	0	11673	25993
S/G/Y/R/B/O	NT_005795	AC117430	109778899	3	chr3	NT_005795	AC119737	109931840	3	42765	0	0	42765
S/G/Y/R/B/O	NT_005795	AC117430	109778899	3			AC053487	109585468		154892	0	0	154892
S/G/Y/R/B/O	NT_005795	AC119737	109931840	3	chr3	NT_005795	AC092909	109984621	3	0	1998	0	1998
S/G/Y/R/B/O	NT_005795	AC119737	109931840	3			AC053487	109931840		42762	0	0	42762
S/G/Y/R/B/O	NT_005795	AC092909	109984621	3	chr3	NT_005795	AC117402	110148210	3	0	1240	0	1240
S/G/Y/R/B/O	NT_005795	AC092909	109984621	3			AC021834	109778899		107150	0	1460	108610
S/G/Y/R/B/O	NT_005795	AC117402	110148210	3	chr3	NT_005795	AC133477	110311965	3	0	0	0	0
S/G/Y/R/B/O	NT_005795	AC117402	110148210	3			AC021882	109931840		62909	1530	26857	91296
S/G/Y/R/B/O	NT_005795	AC133477	110311965	3	chr3	NT_005795	AC133124	110410981	3	2043	0	0	2043
S/G/Y/R/B/O	NT_005795	AC133124	110410981	3	chr3	NT_005795	AC092907	110521025	1	0	0	0	0
S/G/Y/R/B/O	NT_005795	AC133124	110410981	3			AC090661	110410981		24579	0	0	24579
S/G/Y/R/B/O	NT_005795	AC133124	110410981	3			AC090661	110410981		24579	0	0	24579
S/G/Y/R/B/O	NT_005795	AC092907	110521025	1	chr3	NT_005795	AC074277	110574287	3	113714	0	0	113714
S/G/Y/R/B/O	NT_005795	AC092907	110521025	1			AC133436	110574287		54784	0	0	54784
S/G/Y/R/B/O	NT_005795	AC092907	110521025	1			AC133436	110574287		54784	0	0	54784
S/G/Y/R/B/O	NT_005795	AC074277	110574287	3	chr3	NT_005795	AC092916	110749351	3	2002	0	0	2002
S/G/Y/R/B/O	NT_005795	AC074277	110574287	3			AC026009	110574287		12373	0	569	12942
S/G/Y/R/B/O	NT_005795	AC092916	110749351	3	chr3	NT_005795	AC055748	110879528	3	0	0	1862	1862
S/G/Y/R/B/O	NT_005795	AC092916	110749351	3			AC026009	110749351		76117	1545	0	77662
S/G/Y/R/B/O	NT_005795	AC055748	110879528	3	chr3	NT_005795	AC117509	111027425	3	0	1947	0	1947
S/G/Y/R/B/O	NT_005795	AC117509	111027425	3	chr3	NT_005795	AC060225	111136580	3	2090	0	0	2090
S/G/Y/R/B/O	NT_005795	AC117509	111027425	3			AC026354	111027425		10370	0	0	10370
S/G/Y/R/B/O	NT_005795	AC060225	111136580	3	chr3	NT_005795	AC024887	111309044	3	0	0	1893	1893
S/G/Y/R/B/O	NT_005795	AC060225	111136580	3			AC015778	111136580		82079	2225	0	84304
S/G/Y/R/B/O	NT_005795	AC060225	111136580	3			AC026354	111309044		47840	0	0	47840
S/G/Y/R/B/O	NT_005795	AC024887	111309044	3	chr3	NT_005795	AC128688	111406080	3	2985	0	0	2985
S/G/Y/R/B/O	NT_005795	AC024887	111309044	3			AC015778	111027425		64561	0	31763	96324
S/G/Y/R/B/O	NT_005795	AC024887	111309044	3			AC024964	111027425		26099	0	0	26099
S/G/Y/R/B/O	NT_005795	AC024887	111309044	3			AC110870	111136580		82157	0	16811	98968
S/G/Y/R/B/O	NT_005795	AC128688	111406080	3	chr3	NT_005795	AC119734	111484094	3	0	0	0	0
S/G/Y/R/B/O	NT_005795	AC128688	111406080	3			AC024964	111309044		14980	0	16730	31710
S/G/Y/R/B/O	NT_005795	AC128688	111406080	3			AC110870	111309044		53926	0	0	53926
S/G/Y/R/B/O	NT_005795	AC119734	111484094	3	chr3	NT_005795	AC112487	111591695	3	0	2002	0	2002
S/G/Y/R/B/O	NT_005795	AC119734	111484094	3			AC024964	111309044		36984	0	0	36984
S/G/Y/R/B/O	NT_005795	AC112487	111591695	3	chr3	NT_005795	AC092894	111669691	3	0	1857	0	1857
S/G/Y/R/B/O	NT_005795	AC112487	111591695	3			AC068958	111591695		54283	1704	0	55987
S/G/Y/R/B/O	NT_005795	AC092894	111669691	3	chr3	NT_005795	AC092692	111795685	3	2001	0	0	2001
S/G/Y/R/B/O	NT_005795	AC092894	111669691	3			AC024131	111484094		65535	3695	30202	99432
S/G/Y/R/B/O	NT_005795	AC092894	111669691	3			AC068958	111484094		22576	0	46569	69145
S/G/Y/R/B/O	NT_005795	AC092894	111669691	3			AC079211	111484094		60687	0	0	60687
S/G/Y/R/B/O	NT_005795	AC092692	111795685	3	chr3	NT_005795	AC048334	111854486	3	2006	0	0	2006
S/G/Y/R/B/O	NT_005795	AC092692	111795685	3			AC024131	111591695		19027	0	0	19027
S/G/Y/R/B/O	NT_005795	AC092692	111795685	3			AC024709	111591695		24843	3157	32714	60714
S/G/Y/R/B/O	NT_005795	AC092692	111795685	3			AC079211	111854486		60219	0	0	60219
S/G/Y/R/B/O	NT_005795	AC048334	111854486	3	chr3	NT_005795	AC069516	112068199	3	2296	0	0	2296
S/G/Y/R/B/O	NT_005795	AC048334	111854486	3			AC024181	111669691		59059	1657	10071	70787
S/G/Y/R/B/O	NT_005795	AC048334	111854486	3			AC024709	111669691		100165	1668	1128	102961
S/G/Y/R/B/O	NT_005795	AC048334	111854486	3			AC079211	112068199		43417	0	0	43417
S/G/Y/R/B/O	NT_005795	AC069516	112068199	3	chr3	NT_005795	AC092892	112071903	3	0	1998	0	1998
S/G/Y/R/B/O	NT_005795	AC092892	112071903	3	chr3	NT_005795	AC074044	112118370	3	2003	0	0	2003
S/G/Y/R/B/O	NT_005795	AC092892	112071903	3			AC024181	112071903		34138	6507	6325	46970
S/G/Y/R/B/O	NT_005795	AC074044	112118370	3	chr3	NT_005795	AC078785	112310372	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005795	AC074044	112118370	3			AC024108	112118370		156034	0	0	156034
S/G/Y/R/B/O	NT_005795	AC074044	112118370	3			AC026559	112118370		89272	0	0	89272
S/G/Y/R/B/O	NT_005795	AC074044	112118370	3			AC092911	112071903		163862	0	0	163862
S/G/Y/R/B/O	NT_005795	AC078785	112310372	3	chr3	NT_005795	AC026329	112494107	3	2002	0	0	2002
S/G/Y/R/B/O	NT_005795	AC078785	112310372	3			AC021655	112071903		41718	4622	36358	82698
S/G/Y/R/B/O	NT_005795	AC078785	112310372	3			AC024108	112071903		64709	0	2109	66818
S/G/Y/R/B/O	NT_005795	AC026329	112494107	3	chr3	NT_005795	AC026348	112609509	3	0	0	0	0
S/G/Y/R/B/O	NT_005795	AC026329	112494107	3			AC055706	112118370		32240	2335	7134	41709
S/G/Y/R/B/O	NT_005795	AC026348	112609509	3	chr3	NT_005795	AC023894	112644097	1	0	0	0	0
S/G/Y/R/B/O	NT_005795	AC026348	112609509	3			AC055706	112310372		10878	2871	0	13749
S/G/Y/R/B/O	NT_005795	AC023894	112644097	1	chr3	NT_005795	AC112128	112711659	3	87541	0	0	87541
S/G/Y/R/B/O	NT_005795	AC023894	112644097	1			AC021695	112310372		24723	2744	2437	29904
S/G/Y/R/B/O	NT_005795	AC112128	112711659	3	chr3	NT_005795	AC055740	112891263	3	56009	0	0	56009
S/G/Y/R/B/O	NT_005795	AC112128	112711659	3			AC021695	112711659		64439	2744	54238	121421
S/G/Y/R/B/O	NT_005795	AC055740	112891263	3	chr3	NT_005795	AC108693	112982864	3	2007	0	0	2007
S/G/Y/R/B/O	NT_005795	AC055740	112891263	3			AC019247	112891263		54936	0	3377	58313
S/G/Y/R/B/O	NT_005795	AC055740	112891263	3			AC021695	112891263		56199	0	0	56199
S/G/Y/R/B/O	NT_005795	AC108693	112982864	3	chr3	NT_005795	AC079944	113079298	3	2031	0	0	2031
S/G/Y/R/B/O	NT_005795	AC108693	112982864	3			AC011022	112711659		56032	0	0	56032
S/G/Y/R/B/O	NT_005795	AC108693	112982864	3			AC019247	112711659		60847	6523	1343	68713
S/G/Y/R/B/O	NT_005795	AC108693	112982864	3			AC107298	113079298		56839	0	0	56839
S/G/Y/R/B/O	NT_005795	AC079944	113079298	3	chr3	NT_005795	AC128687	113205593	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005795	AC079944	113079298	3			AC011022	113079298		64334	1542	29415	95291
S/G/Y/R/B/O	NT_005795	AC079944	113079298	3			AC023963	113079298		49584	0	2005	51589
S/G/Y/R/B/O	NT_005795	AC079944	113079298	3			AC107298	113079298		26307	0	13683	39990
S/G/Y/R/B/O	NT_005795	AC128687	113205593	3	chr3	NT_005795	AC092896	113293930	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005795	AC128687	113205593	3			AC023963	113205593		14086	0	16121	30207
S/G/Y/R/B/O	NT_005795	AC092896	113293930	3	chr3	NT_005795	AC093010	113464260	3	2001	0	0	2001
S/G/Y/R/B/O	NT_005795	AC092896	113293930	3			AC023645	113293930		147433	3735	12747	163915
S/G/Y/R/B/O	NT_005795	AC092896	113293930	3			AC023963	113293930		20483	0	0	20483
S/G/Y/R/B/O	NT_005795	AC092896	113293930	3			AC027054	113293930		26651	5246	4845	36742
S/G/Y/R/B/O	NT_005795	AC093010	113464260	3	chr3	NT_005795	AC131152	113623333	3	0	1999	0	1999
S/G/Y/R/B/O	NT_005795	AC093010	113464260	3			AC027054	113205593		109933	6618	17795	134346
S/G/Y/R/B/O	NT_005795	AC093010	113464260	3			AC068938	113205593		26919	9866	8863	45648
S/G/Y/R/B/O	NT_005795	AC093010	113464260	3			AC073407	113205593		29899	4618	10825	45342
S/G/Y/R/B/O	NT_005795	AC093010	113464260	3			AC084188	113205593		27403	7899	12374	47676
S/G/Y/R/B/O	NT_005795	AC093010	113464260	3			AC107422	113293930		16576	0	25628	42204
S/G/Y/R/B/O	NT_005795	AC131152	113623333	3	chr3	NT_005795	AC083886	113671047	3	2000	0	0	2000
S/G/Y/R/B/O	NT_005795	AC131152	113623333	3			AC068938	113623333		27637	9374	4700	41711
S/G/Y/R/B/O	NT_005795	AC131152	113623333	3			AC073407	113623333		49202	0	0	49202
S/G/Y/R/B/O	NT_005795	AC131152	113623333	3			AC084188	113671047		48360	830	0	49190
S/G/Y/R/B/O	NT_005795	AC131152	113623333	3			AC090552	113671047		28354	0	8570	36924
S/G/Y/R/B/O	NT_005795	AC131152	113623333	3			AC107422	113464260		49373	0	0	49373
S/G/Y/R/B/O	NT_005795	AC083886	113671047	3	chr3	NT_005795	AC055739	113763582	3	2001	0	0	2001
S/G/Y/R/B/O	NT_005795	AC083886	113671047	3			AC068938	113763582		21478	2444	2610	26532
S/G/Y/R/B/O	NT_005795	AC083886	113671047	3			AC073407	113763582		27093	0	1489	28582
S/G/Y/R/B/O	NT_005795	AC083886	113671047	3			AC084188	113763582		37030	16783	1524	55337
S/G/Y/R/B/O	NT_005795	AC083886	113671047	3			AC090552	113763582		19445	0	30634	50079
S/G/Y/R/B/O	NT_005795	AC083886	113671047	3			AC107422	113763582		28633	0	0	28633
S/G/Y/R/B/O	NT_005795	AC055739	113763582	3	chr3	NT_005795	AC078986	113897579	3	0	1976	0	1976
S/G/Y/R/B/O	NT_005795	AC055739	113763582	3			AC068978	113623333		45931	14575	23667	84173
S/G/Y/R/B/O	NT_005795	AC078986	113897579	3	chr3	NT_005795	AC069506	114062119	3	2004	0	0	2004
S/G/Y/R/B/O	NT_005795	AC078986	113897579	3			AC068978	113763582		30079	598	3374	34051
S/G/Y/R/B/O	NT_005795	AC069506	114062119	3	chr3	NT_005795	AC092900	114191388	1	102278	0	0	102278
S/G/Y/R/B/O	NT_005795	AC069506	114062119	3			AC026560	114062119		51151	2692	3264	57107
S/G/Y/R/B/O	NT_005795	AC092900	114191388	1	chr3	NT_005795	AC092915	114191389	3	0	0	35482	35482
S/G/Y/R/B/O	NT_005795	AC092900	114191388	1			AC026560	114191388		116926	2697	0	119623
S/G/Y/R/B/O	NT_005795	AC092900	114191388	1			AC027493	114191388		38979	0	0	38979
S/G/Y/R/B/O	NT_005795	AC092915	114191389	3	chr3	NT_005795	AC069063	114378604	3	2003	0	0	2003
S/G/Y/R/B/O	NT_005795	AC092915	114191389	3			AC026560	114191389		35483	0	0	35483
S/G/Y/R/B/O	NT_005795	AC092915	114191389	3			AC027493	114191389		85138	0	0	85138
S/G/Y/R/B/O	NT_005795	AC069063	114378604	3