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  Chromosome 13 - Genetic Maps - Single Contig
 

Chromosome 13 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009799 NT_033260 NT_033997 NT_009984 NT_009910 NT_033922 NT_033259 NT_024524
NT_028344 NT_009866 NT_009952 NT_027140 NT_024498


  NT_009952
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009952AL356737922956072        
S/G/Y/R/B/O NT_009952AL157363925328063GATA21B04  1372.051 AL157363
S/G/Y/R/B/O NT_009952AL355599925805103        
S/G/Y/R/B/O NT_009952AL353757926610843        
S/G/Y/R/B/O NT_009952AL354811927199913        
S/G/Y/R/B/O NT_009952AL160159929014583        
S/G/Y/R/B/O NT_009952AL138700930309333        
S/G/Y/R/B/O NT_009952AL450425930510053        
S/G/Y/R/B/O NT_009952AL160036931928853        
S/G/Y/R/B/O NT_009952AL357275933663113        
S/G/Y/R/B/O NT_009952AL606810934344203        
S/G/Y/R/B/O NT_009952AL162455935816793AFM288YC11374.301373.041 AL162455
S/G/Y/R/B/O NT_009952AL356598936233813        
S/G/Y/R/B/O NT_009952AL161426936942563AFM207WB81375.801373.041 AL161426
S/G/Y/R/B/O NT_009952AL161426937817713ATA19F06  1373.041 AL161426
S/G/Y/R/B/O NT_009952AL354762938443173        
S/G/Y/R/B/O NT_009952AL139798939965643MFD44  1373.041 AL139798
S/G/Y/R/B/O NT_009952AL137144939971763        
S/G/Y/R/B/O NT_009952AL139318940971483        
S/G/Y/R/B/O NT_009952AL359708942570523        
S/G/Y/R/B/O NT_009952AL137061943070353        
S/G/Y/R/B/O NT_009952AL159970944874733        
S/G/Y/R/B/O NT_009952AL139381946003023        
S/G/Y/R/B/O NT_009952AL157818947143233        
S/G/Y/R/B/O NT_009952AL359750948948083        
S/G/Y/R/B/O NT_009952AL356257949602773UT7403  1375.191 AL356257
S/G/Y/R/B/O NT_009952AL356257950578783D13S122  1373.041 AL356257
S/G/Y/R/B/O NT_009952AL357061951179703AFMB350YE11377.101376.311 AL357061
S/G/Y/R/B/O NT_009952AL627382951609773        
S/G/Y/R/B/O NT_009952AL139376951872683UT5821  1373.041 AL139376
S/G/Y/R/B/O NT_009952AL139376952804023AFM065XE91377.101375.191 AL139376
S/G/Y/R/B/O NT_009952AL138955953158943        
S/G/Y/R/B/O NT_009952AL136104954635983        
S/G/Y/R/B/O NT_009952AL607038954940253        
S/G/Y/R/B/O NT_009952AL162500955552913        
S/G/Y/R/B/O NT_009952AL158192957660813AFMB360ZB91377.101375.193AP001555, AC023228, AL158192, AP001555
S/G/Y/R/B/O NT_009952AL160253959749243UT1585  1376.661AL139087, AL139087, AL160253
S/G/Y/R/B/O NT_009952AL139087960513563        
S/G/Y/R/B/O NT_009952AL159979961231523        
S/G/Y/R/B/O NT_009952AL356098961776773        
S/G/Y/R/B/O NT_009952AL138816963638823        
S/G/Y/R/B/O NT_009952AL353581965684203AFMA204YH91377.101376.261 AL353581
S/G/Y/R/B/O NT_009952AL356486966550443        
S/G/Y/R/B/O NT_009952AL359925968369363GATA153F01  1376.261 AL359925
S/G/Y/R/B/O NT_009952AL161430968741203GGAT12E07  1376.261 AL161430
S/G/Y/R/B/O NT_009952AL161430969699573GATA85D03  1376.261 AL161430
S/G/Y/R/B/O NT_009952AL442067970259683        
S/G/Y/R/B/O NT_009952AL160393971742653        
S/G/Y/R/B/O NT_009952AL159151972337181        
S/G/Y/R/B/O NT_009952AL359746972868573        


  NT_009952 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009952AL359502973344213GATA21F07  1376.801AL159151, AL159151, AL359502, AL603886
S/G/Y/R/B/O NT_009952AL445605974810373        
S/G/Y/R/B/O NT_009952AL356580975535153AFMA304XC91379.301377.471 AL356580
S/G/Y/R/B/O NT_009952AL137120976853003        
S/G/Y/R/B/O NT_009952AL136300977139133        
S/G/Y/R/B/O NT_009952AL445223978828293        
S/G/Y/R/B/O NT_009952AL161896980418683AFM338WD91381.501379.491 AC022669
S/G/Y/R/B/O NT_009952AL137249980697373AFM155YB61381.501379.491 AC022669, AL137249
S/G/Y/R/B/O NT_009952AL356423981687192        
S/G/Y/R/B/O NT_009952AL391670983407603        
S/G/Y/R/B/O NT_009952AL353574983560913        
S/G/Y/R/B/O NT_009952AL161420984455063        
S/G/Y/R/B/O NT_009952AL139084986474793ACT3F12  1379.491 AL139084
S/G/Y/R/B/O NT_009952AL391122986894253        
S/G/Y/R/B/O NT_009952AL159981988626613        
S/G/Y/R/B/O NT_009952AL160155988844013AFMB328XG91381.501379.491 AL160155
S/G/Y/R/B/O NT_009952AL160155989053993AFMC020WG91381.501379.491 AL160155
S/G/Y/R/B/O NT_009952AL136961990205353        
S/G/Y/R/B/O NT_009952AL583784991192963        
S/G/Y/R/B/O NT_009952AL139035991391423        
S/G/Y/R/B/O NT_009952AL359748992967043        
S/G/Y/R/B/O NT_009952AL445184993363683        
S/G/Y/R/B/O NT_009952AL137139994868143AFM143YD61381.501379.491 AL137139
S/G/Y/R/B/O NT_009952AL355338996100953        
S/G/Y/R/B/O NT_009952AL356575999132683AFMB321ZE91383.601381.641 AL356575
S/G/Y/R/B/O NT_009952AL353697999183843        
S/G/Y/R/B/O NT_009952AL1365261001849513AFMA202WD11383.701381.641 AL136526
S/G/Y/R/B/O NT_009952AL1365261001985643PCCA  1381.641 AL136526
S/G/Y/R/B/O NT_009952AL3569661002269533        
S/G/Y/R/B/O NT_009952AL3590851002573401        
S/G/Y/R/B/O NT_009952AL3567321004081343        
S/G/Y/R/B/O NT_009952AL1378791005200913ATA26D07  1382.931 AC067733, AC067734, AL137879
S/G/Y/R/B/O NT_009952AL1378791005625203MFD250  1383.571 AL137879
S/G/Y/R/B/O NT_009952AL1393741005691333        
S/G/Y/R/B/O NT_009952AL3918411006206693        
S/G/Y/R/B/O NT_009952AL1387071007181103        
S/G/Y/R/B/O NT_009952AL3548911008974213        
S/G/Y/R/B/O NT_009952AL3567781010374513AFMC009WF11386.901384.871 AC068887
S/G/Y/R/B/O NT_009952AL3558071010883243        
S/G/Y/R/B/O NT_009952AL1398001012373673        
S/G/Y/R/B/O NT_009952AL1601531013364403        
S/G/Y/R/B/O NT_009952AL5919091015363243AFMA085ZC91386.901384.871 AL136965, AL591909
S/G/Y/R/B/O NT_009952AL5126291015388323        
S/G/Y/R/B/O NT_009952AL1398021017255283        
S/G/Y/R/B/O NT_009952AL1618991017658793        
S/G/Y/R/B/O NT_009952AL3562661019701883AFM248TF11386.901384.871 AL356266
S/G/Y/R/B/O NT_009952AL3562631020309073        
S/G/Y/R/B/O NT_009952AL1591551021259103AFMB320YD51386.901384.871 AL159155
S/G/Y/R/B/O NT_009952AL1580631023167843AFMB291WF11386.901384.871 AL158063
S/G/Y/R/B/O NT_009952AL1577691023838763        


  NT_009952 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009952AL1372461025641473AFM286ZH51387.501385.411 AL137246
S/G/Y/R/B/O NT_009952AL1617711025956213        
S/G/Y/R/B/O NT_009952AL4451881027666533        
S/G/Y/R/B/O NT_009952AL5914981029306143        
S/G/Y/R/B/O NT_009952AL1627171029925403AFM135XB81386.901384.871 AL162717
S/G/Y/R/B/O NT_009952AL3547631032108851AFM164ZF41386.901387.031 AL354763
S/G/Y/R/B/O NT_009952AL3536201033001463ATA9E02  1387.031 AL353620
S/G/Y/R/B/O NT_009952AL3536201034064273GATA100E02  1387.031 AL353620
S/G/Y/R/B/O NT_009952AL3597611034327553        
S/G/Y/R/B/O NT_009952AL3562541035772873AFM126ZG51389.401387.031 AL356254
S/G/Y/R/B/O NT_009952AL4452261035823653        
S/G/Y/R/B/O NT_009952AL3588551036385043        
S/G/Y/R/B/O NT_009952AL1365241037944803        
S/G/Y/R/B/O NT_009952AL1624951039759213        
S/G/Y/R/B/O NT_009952AL1618971040502493        
S/G/Y/R/B/O NT_009952AL6037131042106043        
S/G/Y/R/B/O NT_009952AL3563761042925933        
S/G/Y/R/B/O NT_009952AL3555521044342763        
S/G/Y/R/B/O NT_009952AL1577641045243333        
S/G/Y/R/B/O NT_009952AL6068421046602433        
S/G/Y/R/B/O NT_009952AL6068231047713013AFMA083ZD51391.901390.271 AL606823
S/G/Y/R/B/O NT_009952AL5918471048066763        
S/G/Y/R/B/O NT_009952AL1389541050928613GATA182F09  1390.271 AL138954
S/G/Y/R/B/O NT_009952AL3597511051413783282WA5  1393.521 AL359751
S/G/Y/R/B/O NT_009952AL3597511051488263GATA135E01  1390.271 AL359751
S/G/Y/R/B/O NT_009952AL3597511052082163AFM102XD121392.001390.271 AC008024
S/G/Y/R/B/O NT_009952AL3568571052353923        
S/G/Y/R/B/O NT_009952AL3597451053238203        
S/G/Y/R/B/O NT_009952AL1599821053867723        
S/G/Y/R/B/O NT_009952AL1387011055471841        
S/G/Y/R/B/O NT_009952AL1577591056777943        
S/G/Y/R/B/O NT_009952AL6036321057612463        
S/G/Y/R/B/O NT_009952AL1616171058495843AFM283WF51395.901393.521 AL161617
S/G/Y/R/B/O NT_009952AL1393791059192403GATA44G10  1393.521 AC021993, AL139379
S/G/Y/R/B/O NT_009952AL1393791059537963AFM310YD51395.901393.521 AC021993, AL139379
S/G/Y/R/B/O NT_009952AL1361591060278863        
S/G/Y/R/B/O NT_009952AL1386891061017983        
S/G/Y/R/B/O NT_009952AL4421271062053143        
S/G/Y/R/B/O NT_009952AL1635341064134293        
S/G/Y/R/B/O NT_009952AL1625741064286312        
S/G/Y/R/B/O NT_009952AL3547411066195833AFMB292ZD51396.001393.521 AL354741
S/G/Y/R/B/O NT_009952AL3547411066359853UT1213  1394.561 AL354741
S/G/Y/R/B/O NT_009952AL3651761066639173        
S/G/Y/R/B/O NT_009952AL1601581067187853        
S/G/Y/R/B/O NT_009952AL4452041068229993AFM261YG51395.901393.521 AL445204
S/G/Y/R/B/O NT_009952AL4452041068693083UT7138  1393.521 AL445204
S/G/Y/R/B/O NT_009952AL1389141069049653GATA51B02  1393.521 AL138914
S/G/Y/R/B/O NT_009952AL4456491070287893        
S/G/Y/R/B/O NT_009952AL1372191072188153        
S/G/Y/R/B/O NT_009952AL1387101072504773        


  NT_009952 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009952AL3598311073166583        
S/G/Y/R/B/O NT_009952AL1369641074923833ATA23F06  1396.701AC034296, AC034296, AL136964
S/G/Y/R/B/O NT_009952AL3594361075537703        
S/G/Y/R/B/O NT_009952AL1391891076132803        
S/G/Y/R/B/O NT_009952AL3549851077306753        
S/G/Y/R/B/O NT_009952AL1577621078705023        
S/G/Y/R/B/O NT_009952AL1386941080556313        
S/G/Y/R/B/O NT_009952AL5126481082127953        
S/G/Y/R/B/O NT_009952AL1577711083445673AFMB318XH513101.701398.821 AL157771
S/G/Y/R/B/O NT_009952AL1361321083858303        
S/G/Y/R/B/O NT_009952AL3909181086043763GGAA22G01  1398.821 AL356746, AL390918
S/G/Y/R/B/O NT_009952AL3531431086429243        
S/G/Y/R/B/O NT_009952AL1614311088131003        
S/G/Y/R/B/O NT_009952AL5838481089568023        
S/G/Y/R/B/O NT_009952AL1600311090272293        
S/G/Y/R/B/O NT_009952AL1635411091365203        
S/G/Y/R/B/O NT_009952AL1624971093612883AFMA058XD513105.2013102.731 AC011864, AL162497
S/G/Y/R/B/O NT_009952AL3558101094720343        
S/G/Y/R/B/O NT_009952AL3549471095756833        
S/G/Y/R/B/O NT_009952AL3559741095890913        
S/G/Y/R/B/O NT_009952AL3907551097202943        
S/G/Y/R/B/O NT_009952AL1617731099044143        
S/G/Y/R/B/O NT_009952AL1591531100566093        
S/G/Y/R/B/O NT_009952AL1393851101569283        
S/G/Y/R/B/O NT_009952AL1578201103323203        
S/G/Y/R/B/O NT_009952AL1578751104277853        
S/G/Y/R/B/O NT_009952AL4421281105526793        
S/G/Y/R/B/O NT_009952AL3537041107057053        
S/G/Y/R/B/O NT_009952AL3907541108230223        
S/G/Y/R/B/O NT_009952AL1390861108998573        
S/G/Y/R/B/O NT_009952AL1603951110397673AFM200YH813112.7013110.551AC005054, AC005054
S/G/Y/R/B/O NT_009952AL1627141111649553        
S/G/Y/R/B/O NT_009952AL3596491112273133        
S/G/Y/R/B/O NT_009952AC0050541113702051        
S/G/Y/R/B/O NT_009952AC0342961113741351