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  Chromosome 2 - YAC Map - Single Contig
 

Chromosome 2 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_005403
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005403AC0740192221467803CHLC.GATA6E08.2022907.001 AC074019
S/G/Y/R/B/O NT_005403AC0740192221467803CHLC.GATA7A102908.001 AC074019
S/G/Y/R/B/O NT_005403AC0094102223466573D2S21852909.002 AC009410, AC083997
S/G/Y/R/B/O NT_005403AC0120702224251733AFM268WE52910.001 AC012070
S/G/Y/R/B/O NT_005403AC0739932225402423      
S/G/Y/R/B/O NT_005403AC0738852226845463WI-23802911.001 AC073885
S/G/Y/R/B/O NT_005403AC0076772227043303D2S3622912.001 AC007677
S/G/Y/R/B/O NT_005403AC0063682229181943WI-12502913.001 AC006368
S/G/Y/R/B/O NT_005403AC0063752230683163D2S22132915.001 AC006375, AC079392
S/G/Y/R/B/O NT_005403AC0077482232191743D2S22182914.001 AC007748
S/G/Y/R/B/O NT_005403AC0082732233364723D2S22972916.001 AC008273
S/G/Y/R/B/O NT_005403AC0075592233847813      
S/G/Y/R/B/O NT_005403AC0933842235421813D2S3412917.001 AC093384
S/G/Y/R/B/O NT_005403AC1053802236419963      
S/G/Y/R/B/O NT_005403AC0099732236502823D2S3962918.001 AC009973
S/G/Y/R/B/O NT_005403AC0931712238758333D2S23172919.001 AC093171
S/G/Y/R/B/O NT_005403AC0099502239631203      
S/G/Y/R/B/O NT_005403AC0099492241392263D2S1722922.001AC079002, AC009949, AC079002
S/G/Y/R/B/O NT_005403AC0101492242926533WI-86922921.001AC022295, AC010149, AC022295
S/G/Y/R/B/O NT_005403AC0101492243015163WI-90932920.001AC022295, AC010149, AC022295
S/G/Y/R/B/O NT_005403AC0988232244430573      
S/G/Y/R/B/O NT_005403AC0840312245431743      
S/G/Y/R/B/O NT_005403AC0125072246522543NIB11942923.001 AC012507
S/G/Y/R/B/O NT_005403AC0925342247827273      
S/G/Y/R/B/O NT_005403AC1053442248140621      
S/G/Y/R/B/O NT_005403AC0094072249389793WI-79212924.001AC105344, AC009407, AC036208, AC044850, AC105344
S/G/Y/R/B/O NT_005403AC0187382251722143CHLC.GATA67B012925.001 AC018738, AC019096, AC074185
S/G/Y/R/B/O NT_005403AC0187382251722903CHLC.GATA12H10.10142927.001 AC018738, AC019096, AC074185
S/G/Y/R/B/O NT_005403AC0187382251846033D2S22762926.001 AC018738, AC074185
S/G/Y/R/B/O NT_005403AC0171042252856463WI-77672928.001 AC017104, M60858
S/G/Y/R/B/O NT_005403AC1046342253910931      
S/G/Y/R/B/O NT_005403AC1085112253952253      
S/G/Y/R/B/O NT_005403AC1068762255250671D2S3312930.001 AC106876
S/G/Y/R/B/O NT_005403AC0166922256213333D2S21762932.001 AC016692
S/G/Y/R/B/O NT_005403AC0166922256611593D2S2062931.001 AC016692
S/G/Y/R/B/O NT_005403AC0648522256993553      
S/G/Y/R/B/O NT_005403AC0732542258501363      
S/G/Y/R/B/O NT_005403AC0933832259316643      
S/G/Y/R/B/O NT_005403AC0921652259336583      
S/G/Y/R/B/O NT_005403AC0681342260939013WI-89642929.001 AC074188
S/G/Y/R/B/O NT_005403AC0933742262107463      
S/G/Y/R/B/O NT_005403AF3122252263174413      
S/G/Y/R/B/O NT_005403AC0191302263838953      
S/G/Y/R/B/O NT_005403AC1054612265000301      
S/G/Y/R/B/O NT_005403AC0974832265355563WI-77442853.001 AC097483
S/G/Y/R/B/O NT_005403AC0210162266288663      
S/G/Y/R/B/O NT_005403AC0738382268186203      
S/G/Y/R/B/O NT_005403AC0125102269276233      
S/G/Y/R/B/O NT_005403AC0798102270326403      
S/G/Y/R/B/O NT_005403AC0099742270366563      


  NT_005403 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005403AF3159432272736883CHLC.GATA3F052859.001AC073128, AC027416, AC073128, AF315943
S/G/Y/R/B/O NT_005403AC0731282272757191      
S/G/Y/R/B/O NT_005403AC0974682272928903      
S/G/Y/R/B/O NT_005403AC0205752274626313      
S/G/Y/R/B/O NT_005403AC0689462274801701      
S/G/Y/R/B/O NT_005403AC1148032276504301      
S/G/Y/R/B/O NT_005403AC0608202277100101      
S/G/Y/R/B/O NT_005403AC0134352277191503      
S/G/Y/R/B/O NT_005403AC0682182278330281      
S/G/Y/R/B/O NT_005403AC0734762278334331      
S/G/Y/R/B/O NT_005403AC0240092281080731      
S/G/Y/R/B/O NT_005403AC0409912281130631      
S/G/Y/R/B/O NT_005403AC0535032281378803      
S/G/Y/R/B/O NT_005403AC0099552283095463      
S/G/Y/R/B/O NT_005403AC0095022284445793      
S/G/Y/R/B/O NT_005403AC0082812287079833D2S1632861.001 AC008281, AC037440, AC093688
S/G/Y/R/B/O NT_005403AC0093102287702223      
S/G/Y/R/B/O NT_005403AC0930832288962343D2S1202862.001 AC093083
S/G/Y/R/B/O NT_005403AC1147652289556111      
S/G/Y/R/B/O NT_005403AC0192112289953023      
S/G/Y/R/B/O NT_005403AC0190512292659543CHLC.GAAT1C102863.001 AC019051
S/G/Y/R/B/O NT_005403AC0796072292980213      
S/G/Y/R/B/O NT_005403AC0679562293468543      
S/G/Y/R/B/O NT_005403AC1070782295165621      
S/G/Y/R/B/O NT_005403AC0938432295961933D2S3442865.001 AC093843
S/G/Y/R/B/O NT_005403AC0192082297413793D2S3772864.001 AC019208
S/G/Y/R/B/O NT_005403AC1060422298175893      
S/G/Y/R/B/O NT_005403AC0931602299345173D2S1262866.001 AC093160
S/G/Y/R/B/O NT_005403AC0112332299441973D2S23722868.001 AC011233
S/G/Y/R/B/O NT_005403AC0112332300307953D2S21482867.001 AC011233, AC036215
S/G/Y/R/B/O NT_005403AC0108992300934273      
S/G/Y/R/B/O NT_005403AC0798342303034593      
S/G/Y/R/B/O NT_005403AC0684892304100803      
S/G/Y/R/B/O NT_005403AC0092242305700863AFMB015ZA52870.001 AC009224
S/G/Y/R/B/O NT_005403AC0092312306074483CHLC.GAAT1B022871.001 AC009231
S/G/Y/R/B/O NT_005403AC0092312306207223D2S3392869.001 AC009231
S/G/Y/R/B/O NT_005403AC0093022307462623WI-81925477.002AC011381, AC113403, AC011381, AC011385, AC113403
S/G/Y/R/B/O NT_005403AC0093022308824913AFM348TG52881.001 AC009302
S/G/Y/R/B/O NT_005403AC0125912309188883D2S1022874.001 AC012591
S/G/Y/R/B/O NT_005403AC0125912309602133AFM311ZE52873.001 AC012591
S/G/Y/R/B/O NT_005403AC0125912309948293D2S21972872.001 AC012591, U12259
S/G/Y/R/B/O NT_005403AC0109802310667933AFMA288WG92875.001 AC010980
S/G/Y/R/B/O NT_005403AC0109802310759423WI-79622877.001 AC010980
S/G/Y/R/B/O NT_005403AC0109802311861563D2S3132879.001AC112718, AC010980, AC112718
S/G/Y/R/B/O NT_005403AC1127182312177131D2S23002876.001 AC112718
S/G/Y/R/B/O NT_005403AC0974612312310283      
S/G/Y/R/B/O NT_005403AC1047722314008563      
S/G/Y/R/B/O NT_005403AC0167122316133513D2S3602883.001 AC016712
S/G/Y/R/B/O NT_005403AC0167122316482483D2S1302882.001 AC016712
S/G/Y/R/B/O NT_005403AC0134762317519773CHLC.GATA2E04.7602885.001 AC013476


  NT_005403 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005403AC0134762317848393AFM172XE92884.001 AC013476
S/G/Y/R/B/O NT_005403AC0170142318034323      
S/G/Y/R/B/O NT_005403AC0933802319837983      
S/G/Y/R/B/O NT_005403AC0680352319921543      
S/G/Y/R/B/O NT_005403AC0791202321270873      
S/G/Y/R/B/O NT_005403AC0134482322296343      
S/G/Y/R/B/O NT_005403AC0125122324125243D2S23232886.001 AC012512
S/G/Y/R/B/O NT_005403AC0938842325527743D2S1332888.001 AC016701, AC093884
S/G/Y/R/B/O NT_005403AC0736412327448653CHLC.GGAT2F12.12152889.001 AC012460, AC012664, AC073641
S/G/Y/R/B/O NT_005403AC0191092328352433      
S/G/Y/R/B/O NT_005403AC1048022330003943      
S/G/Y/R/B/O NT_005403AC0080722332026923D2S3532887.001 AC079836
S/G/Y/R/B/O NT_005403AC0730522332564633WI-67262890.001 AC073052, AC079836
S/G/Y/R/B/O NT_005403AC0730522332564803WI-80282891.001 AC073052, AC079836
S/G/Y/R/B/O NT_005403AC0926792333577493      
S/G/Y/R/B/O NT_005403AC1048302334463701      
S/G/Y/R/B/O NT_005403AC0117392336374423D2S3512892.001 AC011739
S/G/Y/R/B/O NT_005403AC0938062336818903      
S/G/Y/R/B/O NT_005403AC0170952338537973D2S23902893.001 AC017095
S/G/Y/R/B/O NT_005403AC0159742339494113      
S/G/Y/R/B/O NT_005403AC0679612341455103      
S/G/Y/R/B/O NT_005403AC1068902342493943      
S/G/Y/R/B/O NT_005403AC0192312343943043D2S22042899.001 AC019231
S/G/Y/R/B/O NT_005403AC0167172345198113AFMA082ZB92895.001 AC016717
S/G/Y/R/B/O NT_005403AC0681382346744133      
S/G/Y/R/B/O NT_005403AC0693832349472313CHLC.GATA49F042898.001 AC069383
S/G/Y/R/B/O NT_005403AC0693832349474083CHLC.GATA23D032897.001 AC069383
S/G/Y/R/B/O NT_005403AC0931732349509483      
S/G/Y/R/B/O NT_005403AC0620152350512893AFM240VA5P2896.001 AC062015
S/G/Y/R/B/O NT_005403AC0800022351027113      
S/G/Y/R/B/O NT_005403AC1082032352014173      
S/G/Y/R/B/O NT_005403AC0937842353052103CHLC.GATA52F122894.001 AC093784
S/G/Y/R/B/O NT_005403AC0794022354148653      
S/G/Y/R/B/O NT_005403AC0797692354998383      
S/G/Y/R/B/O NT_005403AC0107352355180943WI-92602904.001 AC010735
S/G/Y/R/B/O NT_005403AC0731492357279483CHLC.ATA24E122903.001 AC073149
S/G/Y/R/B/O NT_005403AC0731492357720063WI-57792905.001 AC073149
S/G/Y/R/B/O NT_005403AC0731492357880623WI-73282906.001 AC073149
S/G/Y/R/B/O NT_005403AC0792352359783883D2S21582901.001AC107069, AC079235, AC107069
S/G/Y/R/B/O NT_005403AC0792352360047833CHLC.ATA20H032902.001AC107069, AC079235, AC107069
S/G/Y/R/B/O NT_005403AC1070692360231951      
S/G/Y/R/B/O NT_005403AC0976622361762701D2S4012900.001 AC097662
S/G/Y/R/B/O NT_005403AC0120332362606231      
S/G/Y/R/B/O NT_005403AC0790022363003351      
S/G/Y/R/B/O NT_005403AC0222952363060851      
S/G/Y/R/B/O NT_005403 - WI-102902854.001AC006011, AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005403 - IB24932855.001AC017079, AC017079
S/G/Y/R/B/O NT_005403 - WI-5492856.001AC108059, AC108059
S/G/Y/R/B/O NT_005403 - WI-82622857.001AC017079, AC017079
S/G/Y/R/B/O NT_005403 - WI-32962858.001AC017079, AC108059, AC017079, AC108059


  NT_005403 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005403 - D2S21792860.001AC009469, AC009469
S/G/Y/R/B/O NT_005403 - AFM318ZD92878.001AC002041, AC007882, AC007908, AC002041, AC007882, AC007908
S/G/Y/R/B/O NT_005403 - CHLC.GATA88E012880.000