Chromosome 2 - YAC Map - Single Contig

Chromosome 2 - YAC Map - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005204

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005204	AC012074	24593138	1	WI-6283	2	109.00	1		AC012074
S/G/Y/R/B/O	NT_005204	AC012074	24638065	1	D2S144	2	107.00	1		AC012074
S/G/Y/R/B/O	NT_005204	AC012457	24731302	3	D2S171	2	108.00	1		AC012457
S/G/Y/R/B/O	NT_005204	AC012457	24768029	3	IB1871	2	106.00	1		AC012457
S/G/Y/R/B/O	NT_005204	AC013267	24843746	3	WI-1744	2	105.00	1		AC013267
S/G/Y/R/B/O	NT_005204	AC012073	24990276	3	D2S2170	2	101.00	1		AC012073
S/G/Y/R/B/O	NT_005204	AC012073	25061490	3	D2S2168	2	104.00	1		AC012073
S/G/Y/R/B/O	NT_005204	AC012073	25107242	3	STSG-9982	2	100.00	1		AC012073
S/G/Y/R/B/O	NT_005204	AC013459	25190177	3	WI-5262	2	102.00	1		AC013459
S/G/Y/R/B/O	NT_005204	AC013459	25258241	3	WI-6305	2	103.00	1		AC013459
S/G/Y/R/B/O	NT_005204	AC093798	25296561	3
S/G/Y/R/B/O	NT_005204	AC078975	25530438	1
S/G/Y/R/B/O	NT_005204	AC104699	25586576	1
S/G/Y/R/B/O	NT_005204	AC019144	25666200	3
S/G/Y/R/B/O	NT_005204	AC010150	25909138	3	D2S2144	2	110.00	1		AC010150
S/G/Y/R/B/O	NT_005204	AC064847	25984096	3
S/G/Y/R/B/O	NT_005204	AC013449	26119024	3
S/G/Y/R/B/O	NT_005204	AC011742	26418890	3	D2S158	2	115.00	1		AC011742
S/G/Y/R/B/O	NT_005204	AC010896	26525855	3	D2S2223	2	114.00	1	AC093378,	AC010896, AC093378
S/G/Y/R/B/O	NT_005204	AC093378	26608050	1
S/G/Y/R/B/O	NT_005204	AC108070	26664848	1
S/G/Y/R/B/O	NT_005204	AC074388	26667119	1
S/G/Y/R/B/O	NT_005204	AC015977	26809642	3	D2S174	2	112.00	1	AC074388,	AC074388
S/G/Y/R/B/O	NT_005204	AC015977	26870933	3	WI-8567	8	199.00	4	AC008810, AC008922,	AB061834, AC008810, AC008922, AC025758
S/G/Y/R/B/O	NT_005204	AC011740	26948471	3	WI-9792	2	113.00	1		AC011740
S/G/Y/R/B/O	NT_005204	AC013472	27142316	3	IB574	2	117.00	1		AC013472
S/G/Y/R/B/O	NT_005204	AC013472	27142615	3	IB426	2	116.00	1		AC013472
S/G/Y/R/B/O	NT_005204	AC013403	27253976	3
S/G/Y/R/B/O	NT_005204	AC013413	27411683	3
S/G/Y/R/B/O	NT_005204	AC109828	27528530	1
S/G/Y/R/B/O	NT_005204	AC074117	27637881	3	WI-2969	2	119.00	1	AC009427,	AC009427, AC074117
S/G/Y/R/B/O	NT_005204	AC009427	27738742	1
S/G/Y/R/B/O	NT_005204	AC109829	27741079	1
S/G/Y/R/B/O	NT_005204	AC074091	27822221	3	WI-2314	2	120.00	1	AC109829,	AC074091, AC109829
S/G/Y/R/B/O	NT_005204	AC074091	27966703	3	WI-10842	2	122.00	1		AC074091
S/G/Y/R/B/O	NT_005204	AC110084	29530355	1	AFM115YB6	2	121.00	1		AC110084
S/G/Y/R/B/O	NT_005204	AC009228	28000117	3	AFMA273ZB9	2	99.00	1	AC078975,	AC078975
S/G/Y/R/B/O	NT_005204	AC008073	28157899	3
S/G/Y/R/B/O	NT_005204	AC104665	28322559	3
S/G/Y/R/B/O	NT_005204	AC066692	28363508	3
S/G/Y/R/B/O	NT_005204	AC079924	28510690	3
S/G/Y/R/B/O	NT_005204	AC009242	28565772	3
S/G/Y/R/B/O	NT_005204	AC011239	28723967	3
S/G/Y/R/B/O	NT_005204	AC012506	28911842	3
S/G/Y/R/B/O	NT_005204	AC110925	29107145	3
S/G/Y/R/B/O	NT_005204	AC018467	29247395	3	CHLC.GAAT1F2	2	98.00	1		AC018467
S/G/Y/R/B/O	NT_005204	AC018467	29264149	3	WI-10840	2	97.00	1		AC018467
S/G/Y/R/B/O	NT_005204	AC016768	29339253	3	CHLC.GGAT13C10	2	96.00	1		AC016768, AC068572, AC105317
S/G/Y/R/B/O	NT_005204	AC016768	29370098	3	D2S2221	2	95.00	1		AC016768
S/G/Y/R/B/O	NT_005204	AC104807	29447201	3

NT_005204 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005204	AC021171	29588565	3
S/G/Y/R/B/O	NT_005204	AC096552	29824116	3	WI-6612	2	123.00	1		AC092842, AC096552
S/G/Y/R/B/O	NT_005204	AC093690	30066520	3	D2S2556	2	125.00	1	AC104695,	AC093690, AC097718, AC104695
S/G/Y/R/B/O	NT_005204	AC104695	30108421	3	D2S165	2	127.00	1		AC097718, AC104695
S/G/Y/R/B/O	NT_005204	AC104695	30111318	3	D2S365	2	124.00	1		AC097718, AC104695
S/G/Y/R/B/O	NT_005204	AC104695	30124624	3	D2S366	2	126.00	1		AC097718, AC104695
S/G/Y/R/B/O	NT_005204	AC093164	30223758	3
S/G/Y/R/B/O	NT_005204	AC074011	30374314	3	D2S2312	2	132.00	1		AC022076, AC074011
S/G/Y/R/B/O	NT_005204	AC092164	30456129	3	CHLC.ATA3G09	2	133.00	1		AC022076, AC092164
S/G/Y/R/B/O	NT_005204	AC092164	30457429	3	AFM185XC11	2	131.00	1		AC022076, AC092164
S/G/Y/R/B/O	NT_005204	AC097724	30530834	3	D2S392	2	128.00	1		AC097724
S/G/Y/R/B/O	NT_005204	AC097720	30674754	3	WI-9210	2	129.00	1		AC097720
S/G/Y/R/B/O	NT_005204	AC105398	30718784	3	D2S170	2	130.00	1		AC105398
S/G/Y/R/B/O	NT_005204	AC093593	30861378	3
S/G/Y/R/B/O	NT_005204	AC074096	30981740	3	CHLC.GATA8F07.440	2	134.00	1		AC074096
S/G/Y/R/B/O	NT_005204	AC074096	31097181	3	D2S146	2	135.00	1	AC106899,	AC074096, AC106899
S/G/Y/R/B/O	NT_005204	AC106899	31105366	1
S/G/Y/R/B/O	NT_005204		-		D2S305	2	75.00	1	AC012446, AC073851,	AC012446, AC073851
S/G/Y/R/B/O	NT_005204		-		D2S310	2	76.00	1	AC018741,	AC016391, AC018741
S/G/Y/R/B/O	NT_005204		-		D2S387	2	77.00	1	AC012446,	AC012446
S/G/Y/R/B/O	NT_005204		-		WI-5349	2	78.00	1	AC018741, AC073851,	AC016391, AC018741, AC073851
S/G/Y/R/B/O	NT_005204		-		WI-4146	2	79.00	1	AC010096,	AC010096, AC069283
S/G/Y/R/B/O	NT_005204		-		WI-3182	2	80.00	1	AC010096,	AC010096, AC069283
S/G/Y/R/B/O	NT_005204		-		D2S175	2	81.00	1	AC019055,	AC019055
S/G/Y/R/B/O	NT_005204		-		WI-9785	2	82.00	1	AC013400,	AC013400
S/G/Y/R/B/O	NT_005204		-		WI-6223	2	83.00	1	AC013400,	AC013400
S/G/Y/R/B/O	NT_005204		-		WI-7801	2	84.00	1	AC021877, AC079145,	AC021877, AC079145
S/G/Y/R/B/O	NT_005204		-		WI-2532	2	85.00	1	AC041029, AC104792, AC116171,	AC041029, AC104792, AC116171
S/G/Y/R/B/O	NT_005204		-		D2S2150	2	86.00	1	AC007041, AC041029, AC104792,	AC007041, AC041029, AC104792
S/G/Y/R/B/O	NT_005204		-		GCT11G10	2	87.00	1	AC023137,	AC023137
S/G/Y/R/B/O	NT_005204		-		AFMB293ZC9	2	88.00	1	AC012361, AC023124,	AC012361, AC023124
S/G/Y/R/B/O	NT_005204		-		D2S2373	2	89.00	1	AC112228,	AC112228
S/G/Y/R/B/O	NT_005204		-		WI-7669	2	90.00	1	AC010872,	AC010872, M19828
S/G/Y/R/B/O	NT_005204		-		AFMA070ZA9	2	91.00	1	AC012361, AC023124,	AC012361, AC023124
S/G/Y/R/B/O	NT_005204		-		WI-5693	2	92.00	1	AC096570,	AC096570
S/G/Y/R/B/O	NT_005204		-		AFMB353WF1	2	93.00	1	AC074233,	AC074233
S/G/Y/R/B/O	NT_005204		-		WI-3742	2	94.00	1	AC096561,	AC096561
S/G/Y/R/B/O	NT_005204		-		WI-9398	2	111.00	1	AL449323,	AL449323
S/G/Y/R/B/O	NT_005204		-		WI-7987	2	118.00	0	AC011740,	AC011740