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  Chromosome 9 - YAC Map - Single Contig
 

Chromosome 9 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_008580
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL353608599324963      
S/G/Y/R/B/O NT_008580AL161457601054873      
S/G/Y/R/B/O NT_008580AL353616602278753      
S/G/Y/R/B/O NT_008580AL354794604103433WI-35649154.001 AL354794
S/G/Y/R/B/O NT_008580AL356219605498393      
S/G/Y/R/B/O NT_008580AL162730606652083      
S/G/Y/R/B/O NT_008580AL590238608345893      
S/G/Y/R/B/O NT_008580AL358113609663873WI-93309156.001 AL358113
S/G/Y/R/B/O NT_008580AL355140611037462WI-73659161.001 AL355140
S/G/Y/R/B/O NT_008580AL355140611041462WI-101379160.001 AL355140
S/G/Y/R/B/O NT_008580AL355140611422272WI-72889155.001 AL355140
S/G/Y/R/B/O NT_008580AL353693611890403      
S/G/Y/R/B/O NT_008580AL162421612967343WI-41229157.001 AC008248
S/G/Y/R/B/O NT_008580AL162412614350391CHLC.ATC4F079158.001 AC008248
S/G/Y/R/B/O NT_008580AL162412614388771D9S159159.001 AC008248, AL162412
S/G/Y/R/B/O NT_008580AL603625615440503      
S/G/Y/R/B/O NT_008580AL591215616364202D9S2739162.001 AC022857, AL591215
S/G/Y/R/B/O NT_008580AL606666617080343      
S/G/Y/R/B/O NT_008580AL392044618400231WI-55649163.001 AL392044
S/G/Y/R/B/O NT_008580AL158153619012613      
S/G/Y/R/B/O NT_008580AL162390620666133WI-65209164.001 AL162390
S/G/Y/R/B/O NT_008580AL442645621285993      
S/G/Y/R/B/O NT_008580AL358786622858913D9S1669165.001 AL358786
S/G/Y/R/B/O NT_008580AL159990623960903      
S/G/Y/R/B/O NT_008580AL356318626716053WI-38279166.001 AL356318
S/G/Y/R/B/O NT_008580AL592438626860623      
S/G/Y/R/B/O NT_008580AL161913627265753      
S/G/Y/R/B/O NT_008580AL160273628996803CHLC.GATA7D089172.001 AL160273
S/G/Y/R/B/O NT_008580AL160273628996833CHLC.GATA7D129173.001 AL160273
S/G/Y/R/B/O NT_008580AL391819630204063      
S/G/Y/R/B/O NT_008580AL392106632983643D9S18069169.001 AL392106
S/G/Y/R/B/O NT_008580AL161732633507783WI-13469168.001 AC024723, AL161732
S/G/Y/R/B/O NT_008580AL671309634700702      
S/G/Y/R/B/O NT_008580AL138751636085153AFMA116YG99167.001 AC073124, AL138751
S/G/Y/R/B/O NT_008580AL583829637798903      
S/G/Y/R/B/O NT_008580AL590311638274633      
S/G/Y/R/B/O NT_008580AL135924640664023WI-95119170.001 AF062072, AL135924
S/G/Y/R/B/O NT_008580AL135924640666663WI-95549171.001 AF062072, AL135924
S/G/Y/R/B/O NT_008580AL445646641183813      
S/G/Y/R/B/O NT_008580AL596448641824013      
S/G/Y/R/B/O NT_008580AL449323642994613WI-93982111.001 AL449323
S/G/Y/R/B/O NT_008580AL591662643082533      
S/G/Y/R/B/O NT_008580AL590662644770683      
S/G/Y/R/B/O NT_008580AL162416645092393      
S/G/Y/R/B/O NT_008580AL591031645828483      
S/G/Y/R/B/O NT_008580AL359997647177453      
S/G/Y/R/B/O NT_008580AL449083648848483      
S/G/Y/R/B/O NT_008580AL355604650117932      
S/G/Y/R/B/O NT_008580AL451127651928033      
S/G/Y/R/B/O NT_008580AL512594653031363CHLC.GATA61F049179.001 AC053471, AL391558, AL512594, AL590712


  NT_008580 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL627324654658533      
S/G/Y/R/B/O NT_008580AL513124654935402      
S/G/Y/R/B/O NT_008580AL512644656643063      
S/G/Y/R/B/O NT_008580AL603652658062253      
S/G/Y/R/B/O NT_008580AL357872658827643WI-33099177.001 AC019287, AL357872
S/G/Y/R/B/O NT_008580AL357872659051053CHLC.GATA101B099176.001 AL357872
S/G/Y/R/B/O NT_008580AL357872659200913CHLC.GATA28C029178.001 AL357872
S/G/Y/R/B/O NT_008580AL355152659529043      
S/G/Y/R/B/O NT_008580AL355674661180683FB9E39175.001 AL355674
S/G/Y/R/B/O NT_008580AL137018663730963WI-65459174.001 AL137018
S/G/Y/R/B/O NT_008580AL158833664008973      
S/G/Y/R/B/O NT_008580AL354795664096672      
S/G/Y/R/B/O NT_008580AL390874666048573      
S/G/Y/R/B/O NT_008580AL158825666135623      
S/G/Y/R/B/O NT_008580AL133548667408613      
S/G/Y/R/B/O NT_008580AL353756668941533      
S/G/Y/R/B/O NT_008580AL158073670445783D9S1759182.001 AL158073
S/G/Y/R/B/O NT_008580AL158073671085523D9S1469184.001 AL158073
S/G/Y/R/B/O NT_008580AL158073671226663WI-58299183.001 AL158073
S/G/Y/R/B/O NT_008580AL158073671829643D9S2849181.001 AC010828, AL158073
S/G/Y/R/B/O NT_008580AL353780672226413      
S/G/Y/R/B/O NT_008580AL160280673088793      
S/G/Y/R/B/O NT_008580AL157883674159103      
S/G/Y/R/B/O NT_008580AL359253676034163D9S2769180.001 AL359253
S/G/Y/R/B/O NT_008580AL359253676221783WI-29029187.001 AL359253
S/G/Y/R/B/O NT_008580AL353607677783963      
S/G/Y/R/B/O NT_008580AL589653679223983WI-108139185.001 AL589653
S/G/Y/R/B/O NT_008580AL589653679797163D9S18079186.001 AL589653
S/G/Y/R/B/O NT_008580AL391868680208653      
S/G/Y/R/B/O NT_008580AL590664681210023      
S/G/Y/R/B/O NT_008580AL161626681872193      
S/G/Y/R/B/O NT_008580AL359314684480343AFM207VB89188.001 AC009556, AL359314
S/G/Y/R/B/O NT_008580AL390239685187723D9S18349189.001 AL390239
S/G/Y/R/B/O NT_008580AL390239685774523D9S18609190.001 AL390239
S/G/Y/R/B/O NT_008580AL353637686264661      
S/G/Y/R/B/O NT_008580AL161789687858353CHLC.GATA89A119191.001 AL161789
S/G/Y/R/B/O NT_008580AL353710688360853      
S/G/Y/R/B/O NT_008580AL359204690184143D9S16749194.001 AL359204
S/G/Y/R/B/O NT_008580AL158159690443093      
S/G/Y/R/B/O NT_008580AL353794692112153      
S/G/Y/R/B/O NT_008580AL359849692795713      
S/G/Y/R/B/O NT_008580AL355535692997823      
S/G/Y/R/B/O NT_008580AL160268695219953CHLC.GATA89C089193.001 AC012196, AL160268
S/G/Y/R/B/O NT_008580AL160278696105323CHLC.GGAT13B079192.001 AL160278, AL161456