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  Chromosome 9 - YAC Map - Single Contig
 

Chromosome 9 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_029366
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029366AC0064301120643983D9S18239372.001 AC006430, AL354792
S/G/Y/R/B/O NT_029366AL1370681123052843FB23F19375.001 AC006558, AL137068
S/G/Y/R/B/O NT_029366AL5131221124510603CHLC.GGAT4D11.13679373.001 AC006558, AL513122
S/G/Y/R/B/O NT_029366AL1617841124629163      
S/G/Y/R/B/O NT_029366AL3596441125893033WI-46789374.001 AC011969, AL359644
S/G/Y/R/B/O NT_029366AL3579361126507853      
S/G/Y/R/B/O NT_029366AL3652741127563143      
S/G/Y/R/B/O NT_029366AL4502851129262551      
S/G/Y/R/B/O NT_029366AL5962441129346123      
S/G/Y/R/B/O NT_029366AL4455871129780813      
S/G/Y/R/B/O NT_029366AL4426341131788973FB24A129376.001 AL442634
S/G/Y/R/B/O NT_029366AL1624231132050863      
S/G/Y/R/B/O NT_029366AL1624241132914093      
S/G/Y/R/B/O NT_029366AL3596361135143293      
S/G/Y/R/B/O NT_029366AL1622541138024653AFMA239XE99377.001AC006313, AC006313, AL162254
S/G/Y/R/B/O NT_029366AC0063131138175793      
S/G/Y/R/B/O NT_029366AL3595121139256793      
S/G/Y/R/B/O NT_029366AC0070661140705423WI-52799378.001 AC007066
S/G/Y/R/B/O NT_029366AL3589461141713793      
S/G/Y/R/B/O NT_029366AL3653381142636183WI-100449379.001 AC007172, AL365338
S/G/Y/R/B/O NT_029366AL3655041143312693      
S/G/Y/R/B/O NT_029366AL4454891144857813      
S/G/Y/R/B/O NT_029366AL1617901146596503      
S/G/Y/R/B/O NT_029366AC0107411147785461      
S/G/Y/R/B/O NT_029366AL3907741147977761      
S/G/Y/R/B/O NT_029366AL1582081149835993      
S/G/Y/R/B/O NT_029366AC0064501149919433      
S/G/Y/R/B/O NT_029366AL1580521151830601D9S2829392.001 AL158052
S/G/Y/R/B/O NT_029366AL4452841153400153      
S/G/Y/R/B/O NT_029366AL1627241153537753D9S18819380.001 AL162724
S/G/Y/R/B/O NT_029366AL1378461154955263WI-69549385.001 AL137846
S/G/Y/R/B/O NT_029366AL1378461155310493WI-98889382.001 AL137846
S/G/Y/R/B/O NT_029366AL3549791156616303D9S18409387.001AL669818, AL161456, AL354979, AL669818
S/G/Y/R/B/O NT_029366AL6698181157092872      
S/G/Y/R/B/O NT_029366AL1580751158164763AFMA212WE19386.001 AL158075
S/G/Y/R/B/O NT_029366AL3549281159512353WI-82499383.001 AL354928
S/G/Y/R/B/O NT_029366AL3549281160158383NIB19299384.001 AL354928
S/G/Y/R/B/O NT_029366AL4511251160533023      
S/G/Y/R/B/O NT_029366AL4459301162624823D9S18259394.001 AC009195, AL445930
S/G/Y/R/B/O NT_029366AL4459301162628693D9S17899395.001 AC009195, AL445930
S/G/Y/R/B/O NT_029366AL3547101163728683WI-60059381.002AL354702, AL139222, AL354702, AL354710, M19645
S/G/Y/R/B/O NT_029366AL6272231164793311      
S/G/Y/R/B/O NT_029366AC0261551165449921      
S/G/Y/R/B/O NT_029366AL3596321165723383NIB14869397.001AL627223, AL359632, AL583823, AL627223
S/G/Y/R/B/O NT_029366AL1625841166713783CHLC.GAAT11F099396.001 AL162584
S/G/Y/R/B/O NT_029366AL3580741168185303      
S/G/Y/R/B/O NT_029366AL6273031169256113      
S/G/Y/R/B/O NT_029366AL4451861171049541D9S2669388.001AL589923, AL162387, AL445186, AL589923
S/G/Y/R/B/O NT_029366AL5899231171479272      
S/G/Y/R/B/O NT_029366AL4456641172486143      


  NT_029366 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029366AL1623911174096163      
S/G/Y/R/B/O NT_029366AC0064431174360363      
S/G/Y/R/B/O NT_029366AL3563091176426723      
S/G/Y/R/B/O NT_029366AL1619081176869273      
S/G/Y/R/B/O NT_029366AL1617311177911433      
S/G/Y/R/B/O NT_029366AL3549441179734951      
S/G/Y/R/B/O NT_029366AL1361081179956891      
S/G/Y/R/B/O NT_029366AL3600041181756673WI-64949399.001 AC006241, AL360004
S/G/Y/R/B/O NT_029366AL3600041181778173NIB14429398.001 AC006241, AL360004
S/G/Y/R/B/O NT_029366AL3921051181852583      
S/G/Y/R/B/O NT_029366AL1361411182191353      
S/G/Y/R/B/O NT_029366AL1582071183469183      
S/G/Y/R/B/O NT_029366AL5922191185148813      
S/G/Y/R/B/O NT_029366AL5903691185744873      
S/G/Y/R/B/O NT_029366AL3910561187080513D9S1599390.001 AC007779, AL391056
S/G/Y/R/B/O NT_029366AL3538031188257053      
S/G/Y/R/B/O NT_029366AL1617851189894013      
S/G/Y/R/B/O NT_029366AL1581511190608643      
S/G/Y/R/B/O NT_029366AL5922111192233092      
S/G/Y/R/B/O NT_029366AL1601691193634583      
S/G/Y/R/B/O NT_029366AL3568621194874833      
S/G/Y/R/B/O NT_029366AL3576231196309643      
S/G/Y/R/B/O NT_029366AL4502631196683843      
S/G/Y/R/B/O NT_029366AL4452221198240563      
S/G/Y/R/B/O NT_029366AL3901161200493263      
S/G/Y/R/B/O NT_029366AL1624261200684283      
S/G/Y/R/B/O NT_029366AC0074301202297661      
S/G/Y/R/B/O NT_029366AL1625861202480002      
S/G/Y/R/B/O NT_029366AL1579351203067082      
S/G/Y/R/B/O NT_029366AL3602681204709093      
S/G/Y/R/B/O NT_029366AL5907081207650762CHLC.GGAA8B0492.001 AC006312, AL590708
S/G/Y/R/B/O NT_029366AL5907221207727923      
S/G/Y/R/B/O NT_029366AL3590911207828453      
S/G/Y/R/B/O NT_029366AL4452871209652883      
S/G/Y/R/B/O NT_029366AL3564811210014043      
S/G/Y/R/B/O NT_029366AL3596781211747033WI-783912409.002AC008865, AC008401, AC008865, AC008905, AL359678
S/G/Y/R/B/O NT_029366AL4419921211814543      
S/G/Y/R/B/O NT_029366 - D9S2609389.000AL136108, AL136108, AL672142
S/G/Y/R/B/O NT_029366 - D9S1799391.001AL159997, AL159997
S/G/Y/R/B/O NT_029366 - D9S1649393.001AL593848, AL593848