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  Chromosome 1 - YAC Map - Single Contig
 

Chromosome 1 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004511
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004511AC023225288077551      
S/G/Y/R/B/O NT_004511AL390839288127251      
S/G/Y/R/B/O NT_004511AL603790288204411      
S/G/Y/R/B/O NT_004511AC104336289383131      
S/G/Y/R/B/O NT_004511AL513220290439512      
S/G/Y/R/B/O NT_004511AL034379291634403      
S/G/Y/R/B/O NT_004511AL449284292736643      
S/G/Y/R/B/O NT_004511AL033524293293933      
S/G/Y/R/B/O NT_004511AL353604294310213      
S/G/Y/R/B/O NT_004511AL590127294924183      
S/G/Y/R/B/O NT_004511AL031430295318823      
S/G/Y/R/B/O NT_004511AL355386296910633      
S/G/Y/R/B/O NT_004511AL591883298223033      
S/G/Y/R/B/O NT_004511AC026542298300901      
S/G/Y/R/B/O NT_004511AL139419298391281      
S/G/Y/R/B/O NT_004511AC027191299240251      
S/G/Y/R/B/O NT_004511AC021886299513721      
S/G/Y/R/B/O NT_004511AC024688301412001      
S/G/Y/R/B/O NT_004511AL162259301504323      
S/G/Y/R/B/O NT_004511AL513479303920243WI-5389176.001 AL513479
S/G/Y/R/B/O NT_004511AL513479304074613CHLC.GGAA24E02177.001AL355865, AL355865
S/G/Y/R/B/O NT_004511AL355865304083723      
S/G/Y/R/B/O NT_004511AL592526304806413      
S/G/Y/R/B/O NT_004511AL139175304997523      
S/G/Y/R/B/O NT_004511AL354702306319703WI-60059381.002AL354710, AL139222, AL354702, AL354710, M19645
S/G/Y/R/B/O NT_004511AL139260308323903D1S432175.001AL714019, AL139260, AL714019
S/G/Y/R/B/O NT_004511AL714019308600301      
S/G/Y/R/B/O NT_004511AC015478308669051      
S/G/Y/R/B/O NT_004511AL645944309044431      
S/G/Y/R/B/O NT_004511AL606465309138011      
S/G/Y/R/B/O NT_004511AC092265309912593      
S/G/Y/R/B/O NT_004511AL662906312859911      
S/G/Y/R/B/O NT_004511AL137076314160063      
S/G/Y/R/B/O NT_004511AL109740315052653      
S/G/Y/R/B/O NT_004511AL021921315960703D1S449147.001 AL021921, U95738
S/G/Y/R/B/O NT_004511AL161638317518933D1S247148.001 AL161638
S/G/Y/R/B/O NT_004511AL591901318057633      
S/G/Y/R/B/O NT_004511AL137857319336072      
S/G/Y/R/B/O NT_004511AL137027320836493      
S/G/Y/R/B/O NT_004511AL445235321827911      
S/G/Y/R/B/O NT_004511AL355477323100323CHLC.GAAT2B03174.001AL606465, AC026936, AL139015, AL355477, AL606465
S/G/Y/R/B/O NT_004511AL356055323626793      
S/G/Y/R/B/O NT_004511AL442071324579663      
S/G/Y/R/B/O NT_004511AL137853325772633      
S/G/Y/R/B/O NT_004511AL365277327759093WI-5777169.001AC073835, AL033526, AC073835, AL033526, AL365277
S/G/Y/R/B/O NT_004511AL033526328030833      
S/G/Y/R/B/O NT_004511AL354919328438521      
S/G/Y/R/B/O NT_004511AL136115329513751WI-849811501.001AP002344, AL136115, AL139160, AP000933, AP002344
S/G/Y/R/B/O NT_004511AP002344330331141      
S/G/Y/R/B/O NT_004511AL663070330354061      


  NT_004511 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004511AC068629331908803      
S/G/Y/R/B/O NT_004511AC114488333248661      
S/G/Y/R/B/O NT_004511AL356320334828351      
S/G/Y/R/B/O NT_004511AC114495336380271      
S/G/Y/R/B/O NT_004511AL451070337334721      
S/G/Y/R/B/O NT_004511AC114494338853151      
S/G/Y/R/B/O NT_004511AL592073339905293      
S/G/Y/R/B/O NT_004511AL139249340570643      
S/G/Y/R/B/O NT_004511AL445248341098123      
S/G/Y/R/B/O NT_004511AL049795341817593      
S/G/Y/R/B/O NT_004511AC022307342974151      
S/G/Y/R/B/O NT_004511AL109945343507643      
S/G/Y/R/B/O NT_004511AC025388344325781      
S/G/Y/R/B/O NT_004511AL356986344579302      
S/G/Y/R/B/O NT_004511AL033529345540913      
S/G/Y/R/B/O NT_004511AL138800347012583      
S/G/Y/R/B/O NT_004511AC025422347031351      
S/G/Y/R/B/O NT_004511AC114489347035231      
S/G/Y/R/B/O NT_004511AC114493348250691      
S/G/Y/R/B/O NT_004511AC023038348456501      
S/G/Y/R/B/O NT_004511AL033527349559623WI-7196179.001AL663070, AL033527, AL663070, X07263
S/G/Y/R/B/O NT_004511AL033527349766303CHLC.GATA27F07178.001 AL354888
S/G/Y/R/B/O NT_004511AL049824350965663WI-6788173.001 AC067884, AL049824, AL354888
S/G/Y/R/B/O NT_004511AL035404352594283AFMB338WG5168.001 AL035404
S/G/Y/R/B/O NT_004511AL035404352673203WI-4694167.001AC073835, AC073835, AL035404
S/G/Y/R/B/O NT_004511AC073835352678591      
S/G/Y/R/B/O NT_004511AL137791353120543NIB1449151.001AC114493, AC114493, AL137791, AL356780
S/G/Y/R/B/O NT_004511AL031602353546223      
S/G/Y/R/B/O NT_004511AL355864354274523      
S/G/Y/R/B/O NT_004511AL020995354684843D1S2676149.001 AL020995
S/G/Y/R/B/O NT_004511AL020995354826663D1S241150.001 AL020995
S/G/Y/R/B/O NT_004511AC022262355899391      
S/G/Y/R/B/O NT_004511AL662907356035402      
S/G/Y/R/B/O NT_004511AL513327357032931      
S/G/Y/R/B/O NT_004511AF161326357046931      
S/G/Y/R/B/O NT_004511AL138837358551241      
S/G/Y/R/B/O NT_004511AC115285359200541      
S/G/Y/R/B/O NT_004511AC025303359605521      
S/G/Y/R/B/O NT_004511AL355178360075193D1S201152.001AC115285, AC115285, AL355178
S/G/Y/R/B/O NT_004511AL355178360460273WI-611153.001AC025303, AC025303, AL355178
S/G/Y/R/B/O NT_004511AL161643361148713WI-9730154.001AC025303, AC013800, AC025303, AL161643
S/G/Y/R/B/O NT_004511AL161643361665803WI-5750155.001 AC013800, AL161643
S/G/Y/R/B/O NT_004511AL139140361897833      
S/G/Y/R/B/O NT_004511AL121980363397393D1S2783158.001 AL121980
S/G/Y/R/B/O NT_004511AL121980363642003AFM286ZB1157.001 AL121980
S/G/Y/R/B/O NT_004511AL662927363946161      
S/G/Y/R/B/O NT_004511AL607106364790043WI-2344156.001AC012250, AL662927, AC012250, AL607106, AL662927
S/G/Y/R/B/O NT_004511AL596224365004063      
S/G/Y/R/B/O NT_004511AC022251366471321D1S2613159.001AC115286, AC115286, AL359498
S/G/Y/R/B/O NT_004511AC115286366185851      


  NT_004511 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004511AC012250366252441      
S/G/Y/R/B/O NT_004511AL360092367358923      
S/G/Y/R/B/O NT_004511AL008634368215813      
S/G/Y/R/B/O NT_004511AL365188369721731      
S/G/Y/R/B/O NT_004511AC099565371053461D1S195160.001AL356256, AC099565, AL356256
S/G/Y/R/B/O NT_004511AL356256371196472      
S/G/Y/R/B/O NT_004511AL121988372036853D1S2730164.001 AL121988
S/G/Y/R/B/O NT_004511AL122010373065833WI-6768163.001 AL122010
S/G/Y/R/B/O NT_004511AC114490373941111D1S496165.001 AC114490
S/G/Y/R/B/O NT_004511AL607089374750213      
S/G/Y/R/B/O NT_004511AL590434376359822WI-7518162.001AC026026, AC061970, AC026026, AC061970, AL590434
S/G/Y/R/B/O NT_004511AL590434376640792D1S441166.001AC026026, AC061970, AC026026, AC061970, AL590434
S/G/Y/R/B/O NT_004511AC061970377527451      
S/G/Y/R/B/O NT_004511AL160000377550553      
S/G/Y/R/B/O NT_004511AL356362377957871      
S/G/Y/R/B/O NT_004511AC026026377963281      
S/G/Y/R/B/O NT_004511AL445211379199283      
S/G/Y/R/B/O NT_004511AC004865379248243      
S/G/Y/R/B/O NT_004511AL157951380429123      
S/G/Y/R/B/O NT_004511AL357035380727012      
S/G/Y/R/B/O NT_004511AL354864380835153      
S/G/Y/R/B/O NT_004511AL359186382778111      
S/G/Y/R/B/O NT_004511AL139286383239063      
S/G/Y/R/B/O NT_004511AL138787384620833      
S/G/Y/R/B/O NT_004511AC012141385901111      
S/G/Y/R/B/O NT_004511AC114484385948881      
S/G/Y/R/B/O NT_004511AL360074386663771      
S/G/Y/R/B/O NT_004511AL591845387638741      
S/G/Y/R/B/O NT_004511AL358433388864531      
S/G/Y/R/B/O NT_004511AL445245389252331      
S/G/Y/R/B/O NT_004511AL080286390149733      
S/G/Y/R/B/O NT_004511AL596257391702513      
S/G/Y/R/B/O NT_004511 - D1S2743170.001AL050341, AL050341
S/G/Y/R/B/O NT_004511 - WI-5252171.001AL512599, AL512599
S/G/Y/R/B/O NT_004511 - CHLC.GATA67B06172.001AL512599, AL512599