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  Chromosome 1 - YAC Map - Single Contig
 

Chromosome 1 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004487
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004487AL1099211690614303      
S/G/Y/R/B/O NT_004487AL1361701691953663      
S/G/Y/R/B/O NT_004487AL1219831693392873D1S28141598.001 AL121983
S/G/Y/R/B/O NT_004487AL0312861694881433      
S/G/Y/R/B/O NT_004487AL0224001696279463CHLC.ATA4E021599.001 AL022400
S/G/Y/R/B/O NT_004487AL0221711697391003D1S2421597.001 AL022171
S/G/Y/R/B/O NT_004487AL0312781698018223      
S/G/Y/R/B/O NT_004487AL0210691698699553D1S2181600.001 AL021069
S/G/Y/R/B/O NT_004487AL5911081699366403      
S/G/Y/R/B/O NT_004487AL1363771700124003      
S/G/Y/R/B/O NT_004487AL1616711700906091      
S/G/Y/R/B/O NT_004487AC0112201700918191      
S/G/Y/R/B/O NT_004487AP0028091700991551      
S/G/Y/R/B/O NT_004487Z991271702634503      
S/G/Y/R/B/O NT_004487Z992971703782393D1S26911601.001 Z99297
S/G/Y/R/B/O NT_004487Z997151705056973WI-73221603.001 Z99715
S/G/Y/R/B/O NT_004487AL0086261705736893D1S4161602.001 AL008626
S/G/Y/R/B/O NT_004487Z940571706460553      
S/G/Y/R/B/O NT_004487Z940551707296343WI-89041604.002 AC023505, Z94055
S/G/Y/R/B/O NT_004487AL0219191709825343CHLC.ATC3D061607.001 AL021919
S/G/Y/R/B/O NT_004487AL1365301709990493      
S/G/Y/R/B/O NT_004487AL0232851710565883AFM176XG111605.001 AL023285
S/G/Y/R/B/O NT_004487AL0232851710579183AFMB327YG91606.001 AL023285
S/G/Y/R/B/O NT_004487AL1394111711442613WI-17511608.001 AL139411
S/G/Y/R/B/O NT_004487AL5133291712335643      
S/G/Y/R/B/O NT_004487AL5907231713129823      
S/G/Y/R/B/O NT_004487AL1627361714892053      
S/G/Y/R/B/O NT_004487AL3592651715452743WI-53321617.001 AC037429, AL359265
S/G/Y/R/B/O NT_004487AL3592651716136493CHLC.GATA3E111616.001 AC037429, AL359265
S/G/Y/R/B/O NT_004487AL3592651716137473CHLC.GATA3E031614.001 AC026961, AL359265
S/G/Y/R/B/O NT_004487AL3592651716137593CHLC.GATA3F121615.001 AC026961, AL359265
S/G/Y/R/B/O NT_004487AL5910431716535513      
S/G/Y/R/B/O NT_004487AL6720221717986602      
S/G/Y/R/B/O NT_004487AL0317341718023833      
S/G/Y/R/B/O NT_004487AL5962541720088643D1S27691611.001 AL596254
S/G/Y/R/B/O NT_004487AL1392821720514063D1S26591613.001 AC027620
S/G/Y/R/B/O NT_004487AL1392821720605953AFM210WC111612.001 AL139282
S/G/Y/R/B/O NT_004487AL1392821720828323AFMA082XE91609.001 AC027620, AL139282
S/G/Y/R/B/O NT_004487AL0312901722097713NIB18191610.001 AL031290
S/G/Y/R/B/O NT_004487AL0221451722500863      
S/G/Y/R/B/O NT_004487AL1369831723849933      
S/G/Y/R/B/O NT_004487AL0213981724248603      
S/G/Y/R/B/O NT_004487AL0221431726331793WI-62041618.001 AC069000, AL022143
S/G/Y/R/B/O NT_004487AL0221431726677503D1S27861620.001 AL022143
S/G/Y/R/B/O NT_004487AL0221441727165873WI-97871619.001 AL022144
S/G/Y/R/B/O NT_004487AL0495561727779163AFMA296WF11621.001 AL049556
S/G/Y/R/B/O NT_004487AL1220191728215123      
S/G/Y/R/B/O NT_004487AL3563771729319493      
S/G/Y/R/B/O NT_004487AL1361141730124013      
S/G/Y/R/B/O NT_004487AL6628881731382933      


  NT_004487 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004487AL1600071732311733D1S27911623.001 AL160007
S/G/Y/R/B/O NT_004487AL3562791732950483      
S/G/Y/R/B/O NT_004487AL3590751733217583      
S/G/Y/R/B/O NT_004487AL1602811734621213D1S2121622.001 AL160281
S/G/Y/R/B/O NT_004487AL4996171736185573      
S/G/Y/R/B/O NT_004487AL3653571736598423      
S/G/Y/R/B/O NT_004487AL0357021737713023WI-30701624.001 AC027051, AC040900, AL035702
S/G/Y/R/B/O NT_004487AL5130131738461013      
S/G/Y/R/B/O NT_004487AL1377961739211023      
S/G/Y/R/B/O NT_004487AL4491061740487513WI-54601625.001AL162255, AL162255, AL449106
S/G/Y/R/B/O NT_004487AL1622551740796992      
S/G/Y/R/B/O NT_004487AL3555201741588503      
S/G/Y/R/B/O NT_004487AL1391321743164253      
S/G/Y/R/B/O NT_004487AL3591791744722913      
S/G/Y/R/B/O NT_004487AL5123261744742851      
S/G/Y/R/B/O NT_004487AL3558061746595383      
S/G/Y/R/B/O NT_004487AL4510751747023192WI-92731627.001 AL451075
S/G/Y/R/B/O NT_004487AL4510751747071002WI-68481626.001 AL451075
S/G/Y/R/B/O NT_004487AL1602861748193333      
S/G/Y/R/B/O NT_004487AL6914331749727492      
S/G/Y/R/B/O NT_004487AL5909871750080773D1S2151628.001 AL590987
S/G/Y/R/B/O NT_004487AL3598531750573733      
S/G/Y/R/B/O NT_004487AL3537081752284043      
S/G/Y/R/B/O NT_004487AL5906321753184293      
S/G/Y/R/B/O NT_004487AL6454871753987583      
S/G/Y/R/B/O NT_004487AL3907181754846623D1S28831629.001 AC019260, AL139131, AL390718
S/G/Y/R/B/O NT_004487AL1391411756672583WI-97211630.001 AL139141, AL359958
S/G/Y/R/B/O NT_004487AL4454691756866833      
S/G/Y/R/B/O NT_004487AL3583541758160873      
S/G/Y/R/B/O NT_004487AL3584341760448113D1S1171634.001 AL157900, AL358434
S/G/Y/R/B/O NT_004487AL3584341761066573D1S26401633.001 AL358434
S/G/Y/R/B/O NT_004487AL6038841761245223      
S/G/Y/R/B/O NT_004487AL5900851761265163      
S/G/Y/R/B/O NT_004487AL1624311762381773WI-62931631.001 AL162431
S/G/Y/R/B/O NT_004487AL1624311762387293WI-96551632.001 AL162431
S/G/Y/R/B/O NT_004487AL3562671763455792      
S/G/Y/R/B/O NT_004487AL3583931765272863      
S/G/Y/R/B/O NT_004487AL5906241765754613      
S/G/Y/R/B/O NT_004487AL1600591767312402      
S/G/Y/R/B/O NT_004487AL3565001768831663      
S/G/Y/R/B/O NT_004487AL3592701769229073      
S/G/Y/R/B/O NT_004487AL5909981770119323      
S/G/Y/R/B/O NT_004487AL1617341771121283      
S/G/Y/R/B/O NT_004487AF2233911771363553      
S/G/Y/R/B/O NT_004487AC0268201772691471      
S/G/Y/R/B/O NT_004487AL3914771772752673      
S/G/Y/R/B/O NT_004487AL3554821774010173      
S/G/Y/R/B/O NT_004487AL3908561774734653      
S/G/Y/R/B/O NT_004487AL5134801776555713D1S26191640.001 AL513480
S/G/Y/R/B/O NT_004487AL5134801776830883D1S4661639.001 AL513480


  NT_004487 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004487AL1393441777184713D1S28181638.001 AL139344
S/G/Y/R/B/O NT_004487AL1393441777315403WI-90071636.001 AL139344
S/G/Y/R/B/O NT_004487AL1393441777315533STSG-101761637.001 AL139344
S/G/Y/R/B/O NT_004487AL1393441777326843WI-27751635.001 AL139344
S/G/Y/R/B/O NT_004487AL1387761778440623      
S/G/Y/R/B/O NT_004487AL3537781779426113      
S/G/Y/R/B/O NT_004487AL5133441780895583      
S/G/Y/R/B/O NT_004487AL3559991781976023WI-22721795.001  
S/G/Y/R/B/O NT_004487AL6628371782360803WI-72651641.001 AL590620, AL662837
S/G/Y/R/B/O NT_004487AL4503041783046473WI-33861642.001 AL450304
S/G/Y/R/B/O NT_004487AL3549531784913693WI-80571643.001 AL139013, AL354953, M55210
S/G/Y/R/B/O NT_004487AL3549531785920303WI-70431647.001 AC004795, AL139013, AL162401, AL354953
S/G/Y/R/B/O NT_004487AL3569811786066933      
S/G/Y/R/B/O NT_004487AL4492231786557103      
S/G/Y/R/B/O NT_004487AL3598761788251783      
S/G/Y/R/B/O NT_004487AL3553871788453423      
S/G/Y/R/B/O NT_004487AL1378001789025233WI-88761645.001 AL137800
S/G/Y/R/B/O NT_004487AL1578991790339183      
S/G/Y/R/B/O NT_004487AL5904221790622582      
S/G/Y/R/B/O NT_004487AL5922991792783833WI-68601646.001 AL592299
S/G/Y/R/B/O NT_004487AL1579431793362313WI-49111644.001 AL157943
S/G/Y/R/B/O NT_004487AL1580111794056913      
S/G/Y/R/B/O NT_004487AL3546571795727393      
S/G/Y/R/B/O NT_004487AL4452281796307983      
S/G/Y/R/B/O NT_004487AL0786451797450503      
S/G/Y/R/B/O NT_004487AL3581521799491393      
S/G/Y/R/B/O NT_004487AL7138521799895631      
S/G/Y/R/B/O NT_004487AL0968191801131933WI-6271649.001AL136086, AL096819, AL136086
S/G/Y/R/B/O NT_004487AL0968191801176703CHLC.GATA12F101648.001AL136086, AL096819, AL136086
S/G/Y/R/B/O NT_004487AL1360861801586223      
S/G/Y/R/B/O NT_004487AL1099561802035673      
S/G/Y/R/B/O NT_004487AL1098651804113413WI-58581650.001 AL109865
S/G/Y/R/B/O NT_004487AL1361331805692403D1S2401651.001 AL136133
S/G/Y/R/B/O NT_004487AL3562731806448943WI-68761652.001 AL356273
S/G/Y/R/B/O NT_004487AL0786441806484203      
S/G/Y/R/B/O NT_004487AL1173471807765973      
S/G/Y/R/B/O NT_004487AL5133671808381953      
S/G/Y/R/B/O NT_004487AL1333831808427883      
S/G/Y/R/B/O NT_004487AL1219961810449463      
S/G/Y/R/B/O NT_004487AL1357961811355333D1S4441654.001 AC023275, AL135796
S/G/Y/R/B/O NT_004487AL1357961811589583D1S2541655.001 AC023275, AL135796
S/G/Y/R/B/O NT_004487AL1357961812009693D1S1911656.001 AC023275, AL135796
S/G/Y/R/B/O NT_004487AL1357961812139923D1S28481653.001 AL135796
S/G/Y/R/B/O NT_004487AL1335151812892363      
S/G/Y/R/B/O NT_004487AL3918241813436523WI-46971657.001 AL391824
S/G/Y/R/B/O NT_004487AL1185121813515583      
S/G/Y/R/B/O NT_004487AL1357971814463413      
S/G/Y/R/B/O NT_004487AL1335531814874603      
S/G/Y/R/B/O NT_004487AL5962201817447973CHLC.GATA84H011658.001 AC074116, AF172081
S/G/Y/R/B/O NT_004487AL5962201817447973CHLC.GATA31H021659.001 AC074116, AF172081


  NT_004487 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004487AL6630361818062813      
S/G/Y/R/B/O NT_004487AL0968031818154853      
S/G/Y/R/B/O NT_004487AL0491981819432093      
S/G/Y/R/B/O NT_004487AL0335331820199503WI-71421660.001 D28235
S/G/Y/R/B/O NT_004487AL0222411820621693      
S/G/Y/R/B/O NT_004487AL0221471821631153      
S/G/Y/R/B/O NT_004487AL0497971823443373D1S2021661.001 AL049797
S/G/Y/R/B/O NT_004487AL0968021824210063      
S/G/Y/R/B/O NT_004487AL1389281824834553      
S/G/Y/R/B/O NT_004487AL3910651826101943CHLC.GATA23B041662.001 AL391065
S/G/Y/R/B/O NT_004487AL3917061827263903      
S/G/Y/R/B/O NT_004487AL3918131827853113      
S/G/Y/R/B/O NT_004487AL3575591829291593CHLC.GATA7C01.4081663.001 AL357559
S/G/Y/R/B/O NT_004487AL6454741830570643      
S/G/Y/R/B/O NT_004487AL5897891831493593D1S2221665.001 AL589789
S/G/Y/R/B/O NT_004487AL3563721832892233      
S/G/Y/R/B/O NT_004487AL1363721835251573D1S2381666.001 AL136372
S/G/Y/R/B/O NT_004487AL5962111835302773      
S/G/Y/R/B/O NT_004487AL5924471835832173      
S/G/Y/R/B/O NT_004487AC0242991837241821      
S/G/Y/R/B/O NT_004487AC0229591838071381      
S/G/Y/R/B/O NT_004487AC0211361839559611      
S/G/Y/R/B/O NT_004487AC0156831840066861      
S/G/Y/R/B/O NT_004487 - CHLC.GATA43D101664.000AL357559, AL357559
S/G/Y/R/B/O NT_004487 - D1S4611667.001AL359435, AL359435