Chromosome 1 - YAC Map - Single Contig

Chromosome 1 - YAC Map - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_004612

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004612	AC096639	203883503	1
S/G/Y/R/B/O	NT_004612	AC011700	203964487	3	D1S2646	1	775.00	1	AC096639,	AC096639
S/G/Y/R/B/O	NT_004612	AC011700	204092675	3	AFMB072YA5	1	776.00	1		AC011700
S/G/Y/R/B/O	NT_004612	AL606537	204101331	3
S/G/Y/R/B/O	NT_004612	AL592287	204164060	3	AFMA059WE5	1	777.00	1		AC011192, AC074241, AL592287
S/G/Y/R/B/O	NT_004612	AL592287	204207456	3	CHLC.ATC2F01	1	778.00	1	AC011221, AC013624,	AC011221, AC013624
S/G/Y/R/B/O	NT_004612	AC013624	204322553	1
S/G/Y/R/B/O	NT_004612	AL590137	204345849	1
S/G/Y/R/B/O	NT_004612	AL603838	204377371	3	D1S419	1	772.00	1	AL590137,	AL590137, AL603838
S/G/Y/R/B/O	NT_004612	AL592216	204405297	3
S/G/Y/R/B/O	NT_004612	AL445305	204568796	2	D1S237	1	774.00	1		AL445305
S/G/Y/R/B/O	NT_004612	AL445666	204698982	3	WI-4110	1	782.00	1	AC018590, AC044820,	AC018590, AC044820, AL445666
S/G/Y/R/B/O	NT_004612	AC044820	204724413	1
S/G/Y/R/B/O	NT_004612	AC114496	204728493	1
S/G/Y/R/B/O	NT_004612	AC018590	204756692	1
S/G/Y/R/B/O	NT_004612	AC099563	204789609	1
S/G/Y/R/B/O	NT_004612	AL583830	204988279	3
S/G/Y/R/B/O	NT_004612	AC018971	205012738	1	WI-5105	1	784.00	1	AL583830,	AC018971, AL583830
S/G/Y/R/B/O	NT_004612	AC018971	205018743	1	CHLC.GATA87F04	1	783.00	1	AC099675, AL583830,	AC018971, AC099675, AL583830
S/G/Y/R/B/O	NT_004612	AC018971	205018755	1	CHLC.GATA61B10	1	780.00	1	AL583830,	AC018971, AL583830
S/G/Y/R/B/O	NT_004612	AC018971	205018868	1	CHLC.GATA42A04	1	781.00	1	AL583830,	AC018971, AL583830
S/G/Y/R/B/O	NT_004612	AC099675	205033709	1
S/G/Y/R/B/O	NT_004612	AC092804	205268722	3	D1S2629	1	779.00	1		AC092804
S/G/Y/R/B/O	NT_004612	AL450990	205327548	3
S/G/Y/R/B/O	NT_004612	AL451163	205444658	3
S/G/Y/R/B/O	NT_004612	AL365315	205618123	3	WI-6236	1	786.00	2	AC018827, AC092799,	AC018827, AC066596, AC092799, AL365315
S/G/Y/R/B/O	NT_004612	AC092799	205725037	3	AFM248NC1	1	785.00	1		AC092799
S/G/Y/R/B/O	NT_004612	AL513305	205762383	3
S/G/Y/R/B/O	NT_004612	AL358452	205874148	3	WI-3456	1	787.00	1		AL358452
S/G/Y/R/B/O	NT_004612	AL139259	205906891	3
S/G/Y/R/B/O	NT_004612	AC093581	205970357	3	AFM143XF10	1	789.00	1		AC012248, AC093581
S/G/Y/R/B/O	NT_004612	AC093581	206082088	3	AFM268ZD1	1	788.00	1		AC093581
S/G/Y/R/B/O	NT_004612	AL138934	206088372	1
S/G/Y/R/B/O	NT_004612	AL138782	206102791	1
S/G/Y/R/B/O	NT_004612	AC021209	206193973	1	WI-3484	1	790.00	1	AL138782, AL138934,	AC021209, AL138782, AL138934, AL353354
S/G/Y/R/B/O	NT_004612	AC021209	206213633	1	WI-3128	1	791.00	2	AL138782, AL161641,	AC021209, AL138782, AL161641, AL353354
S/G/Y/R/B/O	NT_004612	AC037463	206332645	1
S/G/Y/R/B/O	NT_004612	AL592063	206339439	3
S/G/Y/R/B/O	NT_004612	AL590612	206497834	3
S/G/Y/R/B/O	NT_004612	AL592402	206501614	3
S/G/Y/R/B/O	NT_004612	AC011880	206701893	1
S/G/Y/R/B/O	NT_004612	AL583826	206703633	3
S/G/Y/R/B/O	NT_004612	AL512449	206823841	1
S/G/Y/R/B/O	NT_004612	AL645860	206998531	3
S/G/Y/R/B/O	NT_004612	AL592449	207022778	3
S/G/Y/R/B/O	NT_004612	AC104333	207148750	1	D1S2703	1	771.00	1		AC104333
S/G/Y/R/B/O	NT_004612	AC104333	207190064	1	D1S217	1	770.00	1		AC104333, AL590124
S/G/Y/R/B/O	NT_004612	AL591647	207221010	2
S/G/Y/R/B/O	NT_004612	AL451077	207239793	3
S/G/Y/R/B/O	NT_004612	AL590648	207389388	3

NT_004612 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004612	AL606913	207467447	3	CHLC.GATA63B11	1	769.00	1		AL513471
S/G/Y/R/B/O	NT_004612	AC092803	207497467	3
S/G/Y/R/B/O	NT_004612	AL360091	207620534	1	D1S505	1	768.00	1	AC092803,	AC024541, AC092803, AL360091, AL513471
S/G/Y/R/B/O	NT_004612	AL450352	207850519	3	AFM207WB12	1	692.00	2	AL157402,	AC025126, AL157402
S/G/Y/R/B/O	NT_004612	AL157402	207975968	3	CHLC.GATA48B01	1	698.00	1		AL157402
S/G/Y/R/B/O	NT_004612	AL157402	207985060	3	D1S413	1	697.00	1		AL157402
S/G/Y/R/B/O	NT_004612	AL355988	208058995	1
S/G/Y/R/B/O	NT_004612	AL136321	208064502	3
S/G/Y/R/B/O	NT_004612	AC096631	208234370	1
S/G/Y/R/B/O	NT_004612	AC026240	208278987	1
S/G/Y/R/B/O	NT_004612	AC011778	208301581	1	AFM319WH1	1	700.00	1	AC026240, AC096631,	AC011778, AC026240, AC096631
S/G/Y/R/B/O	NT_004612	AC011778	208336808	1	WI-10868	1	699.00	1	AC026240, AC096631,	AC011778, AC026240, AC096631
S/G/Y/R/B/O	NT_004612	AC022989	208337791	1
S/G/Y/R/B/O	NT_004612	AC105941	208340461	1
S/G/Y/R/B/O	NT_004612	AC099673	208633123	1	WI-2276	1	703.00	1	AC012200,	AC012200, AC099673
S/G/Y/R/B/O	NT_004612	AC012200	208604657	1
S/G/Y/R/B/O	NT_004612	AC099335	208686333	1
S/G/Y/R/B/O	NT_004612	AL358858	208715790	3
S/G/Y/R/B/O	NT_004612	AL445650	208952716	3	WI-9496	1	792.00	1		AC019015, AL356008, AL390775, AL445650
S/G/Y/R/B/O	NT_004612	AL512650	208963251	3
S/G/Y/R/B/O	NT_004612	AL513312	209069834	3	AFM144XF2	1	793.00	1		AC019015, AL356008, AL390775, AL513312
S/G/Y/R/B/O	NT_004612	AC096635	209131411	3	WI-10788	1	794.00	1		AC096635
S/G/Y/R/B/O	NT_004612	AL603752	209267501	3
S/G/Y/R/B/O	NT_004612	AL512626	209367497	3	D1S229	1	797.00	1		AL512626
S/G/Y/R/B/O	NT_004612	AC096634	209423271	3	AFM242XF6	1	799.00	1		AC012268, AC096634
S/G/Y/R/B/O	NT_004612	AC096634	209424492	3	D1S490	1	798.00	1		AC096634
S/G/Y/R/B/O	NT_004612	AC096634	209474386	3	WI-3069	1	796.00	1		AC096634
S/G/Y/R/B/O	NT_004612	AC096634	209568347	3	D1S227	1	800.00	1		AC096634
S/G/Y/R/B/O	NT_004612	AL391216	209581153	3
S/G/Y/R/B/O	NT_004612	AL499609	209753914	3	D1S2860	1	801.00	1		AC025988, AL499609
S/G/Y/R/B/O	NT_004612	AL499609	209767836	3	WI-5434	1	802.00	1		AC025988, AL499609
S/G/Y/R/B/O	NT_004612	AL499609	209801035	3	CHLC.GATA50H07	1	803.00	1		AL499609
S/G/Y/R/B/O	NT_004612	AC096641	209923311	3	AFM291YF1	1	804.00	1		AC096641
S/G/Y/R/B/O	NT_004612	AL354659	209998361	3
S/G/Y/R/B/O	NT_004612	AC097061	210131421	3
S/G/Y/R/B/O	NT_004612	AL445428	210266422	3
S/G/Y/R/B/O	NT_004612	AL591414	210355663	3
S/G/Y/R/B/O	NT_004612	AL357975	210372739	3	WI-5501	1	805.00	1		AL357975
S/G/Y/R/B/O	NT_004612	AL355526	210486926	1	WI-10808	1	806.00	1	AC024505,	AC024505, AL355526
S/G/Y/R/B/O	NT_004612	AC024505	210533246	1
S/G/Y/R/B/O	NT_004612	AC092018	210687946	3	WI-5305	1	701.00	1		AC092018
S/G/Y/R/B/O	NT_004612	AC092018	210701133	3	CHLC.ATA4D06	1	702.00	1		AC092018
S/G/Y/R/B/O	NT_004612	AL450244	210733164	3
S/G/Y/R/B/O	NT_004612	AL590674	210816265	3
S/G/Y/R/B/O	NT_004612	AL596266	210928321	3
S/G/Y/R/B/O	NT_004612	AL445687	210943464	3
S/G/Y/R/B/O	NT_004612	AL591670	211109572	3
S/G/Y/R/B/O	NT_004612	AC096633	211283553	3	D1S2622	1	704.00	1		AC096633
S/G/Y/R/B/O	NT_004612	AL590126	211323891	3
S/G/Y/R/B/O	NT_004612	AC097065	211366071	3

NT_004612 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_004612	AC104461	211540932	3
S/G/Y/R/B/O	NT_004612	AL359834	211616981	3
S/G/Y/R/B/O	NT_004612	AL445483	211685228	3
S/G/Y/R/B/O	NT_004612	AL450104	211847228	3
S/G/Y/R/B/O	NT_004612	AC099756	212002007	3
S/G/Y/R/B/O	NT_004612	AL358473	212123473	3
S/G/Y/R/B/O	NT_004612	AL139159	214482623	1	D1S2738	1	708.00	1		AL139159
S/G/Y/R/B/O	NT_004612	AC104463	212206977	1
S/G/Y/R/B/O	NT_004612	AL359096	212281590	1
S/G/Y/R/B/O	NT_004612	AC053522	212316102	1
S/G/Y/R/B/O	NT_004612	AC015973	212360415	3	D1S2655	1	716.00	1	AC053522,	AC015973, AC053522
S/G/Y/R/B/O	NT_004612	AC015973	212360415	3	AFMA190WD5	1	714.00	1	AC053522,	AC015973, AC053522
S/G/Y/R/B/O	NT_004612	AC015973	212366005	3	WI-6748	1	713.00	1	AC053522, AL359096,	AC015973, AC053522, AL359096
S/G/Y/R/B/O	NT_004612	AC099336	212367998	3	CHLC.GATA25A11	1	715.00	1	AC015973, AL359096,	AC015973, AL359096
S/G/Y/R/B/O	NT_004612	AL589762	212524478	3
S/G/Y/R/B/O	NT_004612	AL356953	212741801	3	D1S1727	1	709.00	1		AL356953
S/G/Y/R/B/O	NT_004612	AL592300	212771921	3
S/G/Y/R/B/O	NT_004612	AL691482	212839975	1
S/G/Y/R/B/O	NT_004612	AC099676	212845003	1
S/G/Y/R/B/O	NT_004612	AL513217	213044580	3
S/G/Y/R/B/O	NT_004612	AL645504	213122007	3	IB2043	1	710.00	1		AL645504
S/G/Y/R/B/O	NT_004612	AC092800	213150242	3
S/G/Y/R/B/O	NT_004612	AL512788	213317647	3
S/G/Y/R/B/O	NT_004612	AJ251973	213323598	3
S/G/Y/R/B/O	NT_004612	AC096677	213525302	3	D1S1723	1	707.00	1	AC083954,	AC083954, AC096677
S/G/Y/R/B/O	NT_004612	AC083954	213545336	1
S/G/Y/R/B/O	NT_004612	AC099337	213637027	1	D1S2621	1	807.00	1		AC099337
S/G/Y/R/B/O	NT_004612	AC099337	213718284	1	CHLC.GATA45A06	1	808.00	1		AC099337, AL390724
S/G/Y/R/B/O	NT_004612	AC096638	213903248	3	WI-7576	1	809.00	1		AC025404, AC096638
S/G/Y/R/B/O	NT_004612	AC092015	213940305	3
S/G/Y/R/B/O	NT_004612	AC022800	214778143	1	AFMA339ZC5	1	810.00	1		AC022800
S/G/Y/R/B/O	NT_004612	AL606468	214097155	3
S/G/Y/R/B/O	NT_004612	AL451060	214225700	3	WI-5828	1	765.00	1		AC016289, AL451060
S/G/Y/R/B/O	NT_004612	AL390790	214580684	1	WI-9272	1	706.00	1		AL390790, AY044273
S/G/Y/R/B/O	NT_004612	AC103925	214340331	1
S/G/Y/R/B/O	NT_004612	Z98266	214365392	3	D1S477	1	705.00	1	AC073202, AC103925,	AC073202, AC103925, Z98266
S/G/Y/R/B/O	NT_004612	AC073202	214424924	1
S/G/Y/R/B/O	NT_004612		-		WI-6375	1	773.00	0	AL590137,	AL590137
S/G/Y/R/B/O	NT_004612		-		WI-2272	1	795.00	1