Chromosome 3 - YAC Map - Single Contig

Chromosome 3 - YAC Map - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005927

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005927	AC024149	41902	1	D3S1578	3	209.00	2	AC021470,	AC021470, AC024149
S/G/Y/R/B/O	NT_005927	AC024156	197991	1
S/G/Y/R/B/O	NT_005927	AC023353	203792	1
S/G/Y/R/B/O	NT_005927	AC018827	363920	1	WI-6236	1	786.00	2	AC092799, AL365315,	AC018827, AC066596, AC092799, AL365315
S/G/Y/R/B/O	NT_005927	AC022010	266648	1
S/G/Y/R/B/O	NT_005927	AC034189	508895	1
S/G/Y/R/B/O	NT_005927	AC026171	516410	1
S/G/Y/R/B/O	NT_005927	AC066595	554527	3	WI-9728	3	334.00	2		AC034248, AC066595
S/G/Y/R/B/O	NT_005927	AC066595	565459	3	WI-10072	3	335.00	2		AC034248, AC066595
S/G/Y/R/B/O	NT_005927	AC026187	708784	3
S/G/Y/R/B/O	NT_005927	AC087091	834250	3	WI-10858	3	3.00	1	AC011609,	AC011609, AC018810, AC026178, AC046155, AC079214, AC087091
S/G/Y/R/B/O	NT_005927	AC011609	965316	3
S/G/Y/R/B/O	NT_005927	AC087428	1008876	3
S/G/Y/R/B/O	NT_005927	AC087431	1067318	3
S/G/Y/R/B/O	NT_005927	AC090044	1307287	3	CHLC.GGAT3A09.1222	3	1.00	1		AC090044
S/G/Y/R/B/O	NT_005927	AC087430	1501732	3	CHLC.GATA22G12	3	246.00	1		AC087430
S/G/Y/R/B/O	NT_005927	AC027123	1673097	3	WI-8499	3	2.00	1		AC024377, AC026190, AC027123
S/G/Y/R/B/O	NT_005927	AC034192	1815464	3	D3S1307	3	5.00	1		AC026206, AC034196
S/G/Y/R/B/O	NT_005927	AC026214	1913807	3	D3S1270	3	4.00	1		AC022011, AC026206
S/G/Y/R/B/O	NT_005927	AC026214	2024118	3	AFM320WD1	3	7.00	1		AC018833, AC022918, AC026182, AC026214, AC087086, AC087092
S/G/Y/R/B/O	NT_005927	AC090043	2053357	3
S/G/Y/R/B/O	NT_005927	AC090042	2225107	3
S/G/Y/R/B/O	NT_005927	AC018814	2503949	3	D3S1297	3	6.00	2		AC018497, AC018814, AC020753, AC024216
S/G/Y/R/B/O	NT_005927	AC087432	2516598	3
S/G/Y/R/B/O	NT_005927	AC087427	2605606	3
S/G/Y/R/B/O	NT_005927	AC024057	2833655	3	D3S3525	3	8.00	1		AC022376, AC024057, AC087187
S/G/Y/R/B/O	NT_005927	AC026882	2857839	3
S/G/Y/R/B/O	NT_005927	AC022008	2960978	3
S/G/Y/R/B/O	NT_005927	AC018842	3109972	3
S/G/Y/R/B/O	NT_005927	AC066608	3232552	3
S/G/Y/R/B/O	NT_005927	AC087094	3424933	3	WI-533	3	10.00	1	AC022002,	AC022002, AC026198, AC087094
S/G/Y/R/B/O	NT_005927	AC022002	3484292	3	WI-3006	3	9.00	1		AC007174, AC020752, AC022002, AC022012, AC026198
S/G/Y/R/B/O	NT_005927	AC024060	3762021	3	CHLC.GATA88H04	3	13.00	1	AC068314,	AC020751, AC023812, AC024060, AC046132, AC068314
S/G/Y/R/B/O	NT_005927	AC068314	3765086	3
S/G/Y/R/B/O	NT_005927	AC026188	3872781	3	WI-2052	3	12.00	1	AC034195,	AC026188, AC034195
S/G/Y/R/B/O	NT_005927	AC034195	3964775	3	D3S1620	3	11.00	1		AC018492, AC023478, AC034195
S/G/Y/R/B/O	NT_005927	AC024158	4048412	3
S/G/Y/R/B/O	NT_005927	AC023484	4197853	3
S/G/Y/R/B/O	NT_005927	AC024167	4370300	3
S/G/Y/R/B/O	NT_005927	AC023480	4514459	3	D3S1560	3	15.00	1		AC018503, AC023480, AC026189, AC069264
S/G/Y/R/B/O	NT_005927	AC023480	4530834	3	D3S3706	3	16.00	1		AC018503, AC023480, AC026189, AC066594, AC069264
S/G/Y/R/B/O	NT_005927	AC018822	4588138	3
S/G/Y/R/B/O	NT_005927	AC023483	4787796	3	AFMA062WH5	3	14.00	1	AC034191,	AC016092, AC023483, AC024636, AC034191
S/G/Y/R/B/O	NT_005927	AC034191	4820536	3
S/G/Y/R/B/O	NT_005927	AC024168	4975474	3	AFM336XF5	3	17.00	1		AC024168
S/G/Y/R/B/O	NT_005927	AC090944	5053461	3
S/G/Y/R/B/O	NT_005927	AC069248	5143519	3
S/G/Y/R/B/O	NT_005927	AC018816	5353469	3	WI-7400	3	18.00	1		AC015541, AC018501, AC018816, AC026162
S/G/Y/R/B/O	NT_005927	AC090955	5492185	3	WI-8040	3	19.00	1		AB043885, AC090955
S/G/Y/R/B/O	NT_005927	AC021999	5646699	3	WI-487	3	20.00	1	AC026202,	AC011606, AC018458, AC018821, AC020754, AC021999, AC026164, AC026202

NT_005927 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005927	AC026202	5671515	3
S/G/Y/R/B/O	NT_005927	AC090842	5838693	3
S/G/Y/R/B/O	NT_005927	AC090940	6065561	3	WI-1837	3	21.00	1		AC073515, AC090940
S/G/Y/R/B/O	NT_005927	AC090940	6129132	3	WI-3115	3	22.00	1		AC073515, AC090940
S/G/Y/R/B/O	NT_005927	AC090938	6140924	3
S/G/Y/R/B/O	NT_005927	AC091069	6287656	3
S/G/Y/R/B/O	NT_005927	AC087857	6400197	3
S/G/Y/R/B/O	NT_005927	AC066590	6514221	3
S/G/Y/R/B/O	NT_005927	AC027119	6594657	3
S/G/Y/R/B/O	NT_005927	AC026167	6764665	3
S/G/Y/R/B/O	NT_005927	AC024162	6945054	3	CHLC.GATA44A05	3	23.00	1		AC020755, AC024159, AC024162, AC026197, AC026205
S/G/Y/R/B/O	NT_005927	AC024162	6982188	3	WI-3863	3	24.00	1	AC025920,	AC020755, AC024159, AC024162, AC025920, AC026181, AC026197
S/G/Y/R/B/O	NT_005927	AC025920	7086258	3
S/G/Y/R/B/O	NT_005927	AC069277	7127294	3
S/G/Y/R/B/O	NT_005927	AC023485	7329666	3	CHLC.GATA48B11	3	25.00	1		AC011327, AC018493, AC067736
S/G/Y/R/B/O	NT_005927	AC023485	7384801	3	D3S1304	3	26.00	1	AC066606,	AC011327, AC018493, AC018840, AC023485, AC066584, AC066606, AC067736
S/G/Y/R/B/O	NT_005927	AC066606	7386966	3
S/G/Y/R/B/O	NT_005927	AC026199	7641553	3	CHLC.ATC2C09	3	27.00	1	AC066585,	AC026199, AC026217, AC066585, AC069247
S/G/Y/R/B/O	NT_005927	AC066585	7690093	3
S/G/Y/R/B/O	NT_005927	AC034194	7792050	3	WI-4009	3	28.00	1		AC034194
S/G/Y/R/B/O	NT_005927	AC026204	7917709	3	D3S3728	3	29.00	1		AC018504, AC026184, AC026204
S/G/Y/R/B/O	NT_005927	AC068313	7965609	3
S/G/Y/R/B/O	NT_005927	AC077690	8159551	3	WI-4179	3	33.00	1		AC023473, AC026157, AC026165, AC077690
S/G/Y/R/B/O	NT_005927	AC024171	8372040	3	WI-1341	3	34.00	1	AC069276,	AC008086, AC024171, AC069276
S/G/Y/R/B/O	NT_005927	AC069276	8445025	3
S/G/Y/R/B/O	NT_005927	AC018832	8543094	3	WI-5685	3	32.00	1		AC018832, AC023472, AC024146, AC026177, AC069275
S/G/Y/R/B/O	NT_005927	AC018832	8649505	3	CHLC.GATA71G12	3	31.00	1	AC087589,	AC018832, AC024146, AC024164, AC066598, AC087589
S/G/Y/R/B/O	NT_005927	AC018832	8651330	3	D3S3591	3	30.00	1	AC087589,	AC018832, AC024146, AC024164, AC024219, AC066598, AC087589
S/G/Y/R/B/O	NT_005927	AC087589	8670055	3
S/G/Y/R/B/O	NT_005927	AC023481	8809298	3
S/G/Y/R/B/O	NT_005927	AC087859	8988070	3
S/G/Y/R/B/O	NT_005927	AC034187	9085436	3
S/G/Y/R/B/O	NT_005927	AC068312	9218027	3
S/G/Y/R/B/O	NT_005927	AC008151	9347854	3
S/G/Y/R/B/O	NT_005927	AC034186	9410636	3
S/G/Y/R/B/O	NT_005927	AC037193	9578758	3	CHLC.GGAT2A11	3	35.00	1		AC037193, AC055745
S/G/Y/R/B/O	NT_005927	AC066583	9726772	3
S/G/Y/R/B/O	NT_005927	AC026191	9830987	3	D3S1597	3	37.00	1	AC018506,	AC018506, AC018823, AC026191
S/G/Y/R/B/O	NT_005927	AC018506	10005619	3	WI-6956	3	36.00	1	AC026194,	AC018506, AC023159, AC026172, AC026194
S/G/Y/R/B/O	NT_005927	AC026194	10018116	3
S/G/Y/R/B/O	NT_005927	AC024163	10113248	3
S/G/Y/R/B/O	NT_005927	AC022382	10201702	3
S/G/Y/R/B/O	NT_005927	AC018809	10342782	3
S/G/Y/R/B/O	NT_005927	AC018808	10486347	3
S/G/Y/R/B/O	NT_005927	AC018828	10668112	3
S/G/Y/R/B/O	NT_005927	AC022384	10808180	3	IB2402	3	40.00	1	AC008116, AC090841,	AC008116, AC012515, AC012600, AC022384, AC090841
S/G/Y/R/B/O	NT_005927	AC022384	10835256	3	WI-7625	3	42.00	1	AC008116, AC090841,	AC008116, AC012515, AC012600, AC022384, AC090841
S/G/Y/R/B/O	NT_005927	AC022384	10836050	3	WI-6061	3	41.00	1	AC008116, AC090841,	AC008116, AC012515, AC012600, AC022384, AC090841
S/G/Y/R/B/O	NT_005927	AC008116	10838094	3
S/G/Y/R/B/O	NT_005927	AC090841	10854884	3

NT_005927 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005927	AC018839	11019670	3	D3S3611	3	38.00	1	AC018502,	AC018499, AC018502, AC018839
S/G/Y/R/B/O	NT_005927	AC018502	11117136	3	D3S3594	3	39.00	1		AC018499, AC018502
S/G/Y/R/B/O	NT_005927	AC018495	11205488	3
S/G/Y/R/B/O	NT_005927	AC027128	11446290	3	WI-6652	3	52.00	1	AC018937, AC024910,	AC018937, AC022379, AC023181, AC024910, AC027128, AC074081
S/G/Y/R/B/O	NT_005927	AC024910	11544218	3	WI-7011	3	51.00	1	AC066580,	AC022379, AC023181, AC024910, AC066580, AC074081
S/G/Y/R/B/O	NT_005927	AC066580	11588994	3
S/G/Y/R/B/O	NT_005927	AC083855	11631051	3
S/G/Y/R/B/O	NT_005927	AC020750	11799870	3
S/G/Y/R/B/O	NT_005927	AC026185	11961163	3	WI-4164	3	50.00	1		AC018494, AC026185
S/G/Y/R/B/O	NT_005927	AC026185	11982814	3	D3S1263	3	44.00	1		AC018811, AC026185
S/G/Y/R/B/O	NT_005927	AC026185	12021743	3	WI-6466	3	43.00	1	AC022001,	AC012086, AC018494, AC018811, AC022001, AC026185
S/G/Y/R/B/O	NT_005927	AC022001	12063111	3	NIB1677	3	45.00	1		AC012086, AC018494, AC018811, AC022001
S/G/Y/R/B/O	NT_005927	AC022001	12134176	3	D3S3714	3	46.00	1		AC012086
S/G/Y/R/B/O	NT_005927	AC090939	12191526	3	D3S3680	3	47.00	1		AC090939
S/G/Y/R/B/O	NT_005927	AC090958	12322306	3
S/G/Y/R/B/O	NT_005927	AC022234	12474839	3	WI-5650	3	48.00	1	AC090958,	AC018841, AC022234, AC022374, AC022875, AC090958
S/G/Y/R/B/O	NT_005927	AC026166	12564250	3	D3S1259	3	49.00	1		AC022875, AC026166
S/G/Y/R/B/O	NT_005927	AC091492	12679919	3
S/G/Y/R/B/O	NT_005927	AC093174	12837782	3
S/G/Y/R/B/O	NT_005927	AC090947	12837812	3
S/G/Y/R/B/O	NT_005927	AC018500	13083086	3	D3S3701	3	53.00	1	AC026170,	AC018500, AC026153, AC026170
S/G/Y/R/B/O	NT_005927	AC018500	13090677	3	WI-7071	3	54.00	1	AC026170,	AC018500, AC026153, AC026170
S/G/Y/R/B/O	NT_005927	AC026170	13116111	3
S/G/Y/R/B/O	NT_005927	AC034198	13219421	3
S/G/Y/R/B/O	NT_005927	AC018836	13388420	3
S/G/Y/R/B/O	NT_005927	AC069271	13467057	3
S/G/Y/R/B/O	NT_005927	AC090885	13665142	3
S/G/Y/R/B/O	NT_005927	AC090942	13828347	3
S/G/Y/R/B/O	NT_005927	AC027124	13973027	3
S/G/Y/R/B/O	NT_005927	AC090951	14039746	3
S/G/Y/R/B/O	NT_005927	AC090005	14146820	3
S/G/Y/R/B/O	NT_005927	AC093611	14148565	3
S/G/Y/R/B/O	NT_005927	AC090646	14265670	3
S/G/Y/R/B/O	NT_005927	AC069462	14423354	3
S/G/Y/R/B/O	NT_005927	AC090004	14544482	3
S/G/Y/R/B/O	NT_005927	AC093495	14651882	3
S/G/Y/R/B/O	NT_005927	AC093496	14833344	3	D3S1554	3	55.00	1	AC090941,	AC090941, AC093496
S/G/Y/R/B/O	NT_005927	AC090941	14910874	3
S/G/Y/R/B/O	NT_005927	AC090952	15107898	3	D3S3595	3	56.00	1		AC090952
S/G/Y/R/B/O	NT_005927	AC090952	15120137	3	AFMC009ZB9	3	58.00	1		AC090952
S/G/Y/R/B/O	NT_005927	AC090957	15276987	3	WI-3593	3	57.00	1	AC087591,	AC024545, AC025163, AC087591, AC090957
S/G/Y/R/B/O	NT_005927	AC087591	15293793	3
S/G/Y/R/B/O	NT_005927	AC090937	15433969	3	WI-3852	3	59.00	1		AC024098, AC024545, AC025163, AC090937, AC093179
S/G/Y/R/B/O	NT_005927	AC090954	15550086	3	WI-7376	3	60.00	1		AC024098, AC090954, AC093179
S/G/Y/R/B/O	NT_005927	AC087590	15707507	3	WI-5975	3	61.00	1		AC026102, AC087590, AC090949
S/G/Y/R/B/O	NT_005927	AC087590	15762666	3	WI-8766	3	62.00	1		AC026102, AC069521, AC087590, AC090949
S/G/Y/R/B/O	NT_005927	AC087590	15803199	3	AFMA283XB1	3	64.00	1		AC069521, AC087590, AC090949
S/G/Y/R/B/O	NT_005927	AC087590	15827493	3	D3S3613	3	63.00	1	AC027125,	AC027125, AC069521
S/G/Y/R/B/O	NT_005927	AC027125	15875256	3
S/G/Y/R/B/O	NT_005927	AC027129	16152567	3	WI-7349	3	65.00	1	AC090950,	AC027030, AC027129, AC090950, AF018631

NT_005927 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005927	AC027129	16152644	3	WI-6371	3	66.00	1	AC090950,	AC027030, AC027129, AC090950, AF018631
S/G/Y/R/B/O	NT_005927	AC090950	16284704	3	D3S1286	3	67.00	1	AC078774, AC090945,	AC078774, AC090945, AC090950
S/G/Y/R/B/O	NT_005927	AC090945	16312933	3
S/G/Y/R/B/O	NT_005927	AC090946	16431211	3
S/G/Y/R/B/O	NT_005927	AC087858	16640654	3	WI-4218	3	69.00	1	AC090953,	AC087858, AC090953
S/G/Y/R/B/O	NT_005927	AC087858	16710398	3	AFM207WE5	3	68.00	1	AC090953,	AC087858, AC090953
S/G/Y/R/B/O	NT_005927	AC090953	16712711	3
S/G/Y/R/B/O	NT_005927	AC090948	16823506	3	UTR-9648	3	70.00	1		AC067973, AC090948
S/G/Y/R/B/O	NT_005927	AC010727	16987819	3	D3S3473	3	71.00	1		AC010727
S/G/Y/R/B/O	NT_005927	AC010139	17033383	3
S/G/Y/R/B/O	NT_005927	AC091493	17194590	3
S/G/Y/R/B/O	NT_005927	AC091291	17314966	3	D3S2338	3	72.00	1		AC091291, AC093488
S/G/Y/R/B/O	NT_005927	AC091291	17366409	3	CHLC.GATA43D03	3	73.00	1	AC090943,	AC090943, AC091291
S/G/Y/R/B/O	NT_005927	AC090943	17443105	3	WI-4453	3	74.00	1		AC016858, AC090943
S/G/Y/R/B/O	NT_005927	AC091491	17482000	3
S/G/Y/R/B/O	NT_005927	AC090644	17606255	3
S/G/Y/R/B/O	NT_005927	AC090960	17797234	3
S/G/Y/R/B/O	NT_005927	AC078774	17967403	1
S/G/Y/R/B/O	NT_005927	AC018937	18036281	1	CHLC.GATA81E09	20	77.00	2	AL034561,	AC018937, AL034561
S/G/Y/R/B/O	NT_005927	AC024151	18039775	1
S/G/Y/R/B/O	NT_005927	AC078915	18098232	1