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  Chromosome 3 - YAC Map - Single Contig
 

Chromosome 3 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005612
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005612AC0120271612060051      
S/G/Y/R/B/O NT_005612AC1067071613466371WI-57843639.001AC068393, AC068393, AC106707
S/G/Y/R/B/O NT_005612AC0683931613916471      
S/G/Y/R/B/O NT_005612AC0899881614059511      
S/G/Y/R/B/O NT_005612AC0109361614190311      
S/G/Y/R/B/O NT_005612AC0250331614230281      
S/G/Y/R/B/O NT_005612AC0800131615228243      
S/G/Y/R/B/O NT_005612AC0217731616522211      
S/G/Y/R/B/O NT_005612AC0929991616894423WI-97473640.001AC021773, AC021773, AC026960, AC092999
S/G/Y/R/B/O NT_005612AC0929991617019063D3S36923641.001AC021773, AC021773
S/G/Y/R/B/O NT_005612AC0929971618260453      
S/G/Y/R/B/O NT_005612AC0266111619750991      
S/G/Y/R/B/O NT_005612AC1073121619751051      
S/G/Y/R/B/O NT_005612AC0170901620511791      
S/G/Y/R/B/O NT_005612AC0225661621501211      
S/G/Y/R/B/O NT_005612AC0928611621569161      
S/G/Y/R/B/O NT_005612AC0639551623741233WI-31763644.001AC012401, AC068770, AC012401, AC024446, AC063955, AC068770, AC092985
S/G/Y/R/B/O NT_005612AC0687701624042813D3S15533642.001AC012401, AC012401, AC068770
S/G/Y/R/B/O NT_005612AC0687701624056463WI-97523643.001AC012401, AC012401, AC068770
S/G/Y/R/B/O NT_005612AC0124011624317571      
S/G/Y/R/B/O NT_005612AC0929431625333943GCT1D83645.001 AC025982, AC092943
S/G/Y/R/B/O NT_005612AC0216541627220023D3S35803646.001AC010370, AC010370
S/G/Y/R/B/O NT_005612AC0254321627324783      
S/G/Y/R/B/O NT_005612AC0103701627546813      
S/G/Y/R/B/O NT_005612AC0183601628598283      
S/G/Y/R/B/O NT_005612AC1109901630384543      
S/G/Y/R/B/O NT_005612AC0098111631610342D3S38863661.001AC048332, AC069210, AC009811, AC048332, AC069210
S/G/Y/R/B/O NT_005612AC0557121632257641      
S/G/Y/R/B/O NT_005612AC0483321633272371      
S/G/Y/R/B/O NT_005612AC0692101633300171      
S/G/Y/R/B/O NT_005612AC0261181633638091CHLC.GATA43F063647.001 AC026118
S/G/Y/R/B/O NT_005612AC1126411633820693      
S/G/Y/R/B/O NT_005612AL3559241635476882      
S/G/Y/R/B/O NT_005612AC0795941635594541      
S/G/Y/R/B/O NT_005612AC0123421636742111      
S/G/Y/R/B/O NT_005612AC0242211636774481      
S/G/Y/R/B/O NT_005612AC0188501638082801      
S/G/Y/R/B/O NT_005612AC0788681638231071WI-69173648.001AC012342, AC018850, AC024221, AC012057, AC012342, AC018850, AC024221, AC078868
S/G/Y/R/B/O NT_005612AC0692241639845311      
S/G/Y/R/B/O NT_005612AC0929861641494741      
S/G/Y/R/B/O NT_005612AC0734521641639211      
S/G/Y/R/B/O NT_005612AC0742761641790011      
S/G/Y/R/B/O NT_005612AC0692321643620611      
S/G/Y/R/B/O NT_005612AC1125021643871141      
S/G/Y/R/B/O NT_005612AC0639371644259821      
S/G/Y/R/B/O NT_005612AC0799431644850593      
S/G/Y/R/B/O NT_005612AC0557611646226113      
S/G/Y/R/B/O NT_005612AC0241091648667831WI-31183638.001AC084212, AC024109, AC026306, AC084212
S/G/Y/R/B/O NT_005612AC0842121648828911      
S/G/Y/R/B/O NT_005612AC0159041649705971      


  NT_005612 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005612AC0206301650345231D3S16053636.001AC015904, AC084212, AC015904, AC020630, AC084212, AC092987
S/G/Y/R/B/O NT_005612AC0206301651195091WI-70703637.001AC013517, AC015904, AC013517, AC015904, AC020630, AC092987
S/G/Y/R/B/O NT_005612AC0265621651890861      
S/G/Y/R/B/O NT_005612AC0929441653163611D3S16073635.001AC026562, AC069256, AC104411, AC026562, AC069256, AC092944, AC104411
S/G/Y/R/B/O NT_005612AC0692561651926393      
S/G/Y/R/B/O NT_005612AC0113171653508173      
S/G/Y/R/B/O NT_005612AC0161421655234231CHLC.GGAA15H103607.001AC068801, AC108674, AC016142, AC068801, AC108674
S/G/Y/R/B/O NT_005612AC0161421660644501WI-53023606.001AC068801, AC108674, AC016142, AC068801, AC108674
S/G/Y/R/B/O NT_005612AC1086741655759201      
S/G/Y/R/B/O NT_005612AC1087291655772611      
S/G/Y/R/B/O NT_005612AC0120221657144743WI-46753627.001AC108729, AC012022, AC108729
S/G/Y/R/B/O NT_005612AC0684981658557971      
S/G/Y/R/B/O NT_005612AC0677211660245191D3S35873630.001 AC067721
S/G/Y/R/B/O NT_005612AC0241601659050121      
S/G/Y/R/B/O NT_005612AC1104901660407401      
S/G/Y/R/B/O NT_005612AC0688011660534811WI-100463605.001AC016142, AC016142, AC068801
S/G/Y/R/B/O NT_005612AC0206361660649861      
S/G/Y/R/B/O NT_005612AC0682961661346721      
S/G/Y/R/B/O NT_005612AC0107631661895531      
S/G/Y/R/B/O NT_005612AC1101521662637871D3S15703629.001 AC110152
S/G/Y/R/B/O NT_005612AC0262101662148901      
S/G/Y/R/B/O NT_005612AC1044721662387331      
S/G/Y/R/B/O NT_005612AC0111031664341281      
S/G/Y/R/B/O NT_005612AF4118491664993723D3S13153608.002AC011103, AC020636, AC078919, AC011103, AC020636, AC036109, AC078919, AC108726, AF411849
S/G/Y/R/B/O NT_005612AC0788161666973593D3S36253611.001 AC078816
S/G/Y/R/B/O NT_005612AC0788161667214833D3S15943612.001AC024886, AC024886, AC078816
S/G/Y/R/B/O NT_005612AC0248861667354433D3S12793610.001 AC024886
S/G/Y/R/B/O NT_005612AC0248861668511833IB32563609.001 AC024886
S/G/Y/R/B/O NT_005612AC0916071669640051      
S/G/Y/R/B/O NT_005612AC0261761670362131      
S/G/Y/R/B/O NT_005612AC0220131670764283      
S/G/Y/R/B/O NT_005612AC0185071672707053D3S12753631.001AC069413, AC018507, AC063934, AC069413
S/G/Y/R/B/O NT_005612AC0694131672773673      
S/G/Y/R/B/O NT_005612AC0840361673470843      
S/G/Y/R/B/O NT_005612AC1127721673691141      
S/G/Y/R/B/O NT_005612AC0929271673833833WI-63923632.001AC112772, AC040902, AC068316, AC092927, AC112772
S/G/Y/R/B/O NT_005612AC1067081675488981WI-63733633.001AC010935, AC024165, AC010935, AC024165, AC106708
S/G/Y/R/B/O NT_005612AC0241651675701411      
S/G/Y/R/B/O NT_005612AC0109351675893501      
S/G/Y/R/B/O NT_005612AC0929931676720603      
S/G/Y/R/B/O NT_005612AC0230081678199191      
S/G/Y/R/B/O NT_005612AC1044111678675571IB3983634.001 AC104411
S/G/Y/R/B/O NT_005612 - D3S35093628.000