Chromosome 1 - YAC Map - Single Contig

Chromosome 1 - YAC Map - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_032954	NT_004350	NT_022058	NT_004321	NT_004547	NT_021917	NT_028054	NT_032970
NT_032967	NT_021937	NT_004488	NT_022041	NT_004873	NT_030584	NT_004572	NT_029218
NT_004610	NT_032979	NT_004391	NT_030571	NT_004782	NT_028053	NT_004538	NT_004511
NT_004852	NT_032963	NT_032971	NT_032972	NT_031724	NT_004386	NT_032978	NT_032977
NT_004424	NT_032976	NT_032965	NT_032973	NT_031689	NT_029223	NT_004641	NT_029865
NT_031737	NT_004636	NT_032948	NT_004464	NT_032953	NT_004483	NT_004302	NT_032960
NT_032956	NT_032974	NT_004902	NT_026943	NT_029231	NT_004658	NT_004686	NT_021979
NT_030565	NT_028050	NT_004308	NT_004623	NT_030567	NT_032957	NT_021977	NT_029860
NT_019273	NT_031697	NT_004754	NT_032961	NT_032975	NT_022052	NT_022071	NT_004434
NT_032962	NT_021907	NT_004441	NT_030577	NT_004858	NT_019291	NT_031708	NT_029226
NT_026945	NT_004982	NT_032952	NT_004668	NT_029874	NT_004487	NT_032958	NT_004599
NT_031716	NT_004671	NT_021909	NT_004416	NT_029862	NT_021905	NT_032947	NT_021877
NT_004612	NT_031718	NT_032950	NT_004525	NT_032955	NT_029863	NT_032951	NT_021953
NT_004861	NT_031696	NT_004908	NT_004559	NT_031728	NT_021973	NT_004753	NT_004433
NT_030561	NT_004836	NT_031685	NT_004771	NT_004734	NT_031700	NT_031719	NT_004536
NT_032964	NT_031732	NT_032966	NT_031730	NT_029870	NT_032969	NT_032968

NT_021905

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_021905	AL359090	191734147	1
S/G/Y/R/B/O	NT_021905	AL365208	191760581	1	WI-6893	1	735.00	1	AC008079, AC008101, AC016027, AL359702,	AC007324, AC008079, AC008101, AC016027, AC016830, AL359702, AL365208
S/G/Y/R/B/O	NT_021905	AL359702	191839545	1	D1S249	1	734.00	1		AL359702
S/G/Y/R/B/O	NT_021905	AL359702	191856774	1	WI-4347	1	736.00	1		AL359702
S/G/Y/R/B/O	NT_021905	AC098934	191940999	1	AFMA310ZE9	1	711.00	1		AC098934
S/G/Y/R/B/O	NT_021905	AC096632	192576821	1	WI-3370	1	718.00	1		AC096632
S/G/Y/R/B/O	NT_021905	AL713965	192029055	1
S/G/Y/R/B/O	NT_021905	AL451008	192080065	2
S/G/Y/R/B/O	NT_021905	AC096533	192133618	1
S/G/Y/R/B/O	NT_021905	AL357131	192400503	1	WI-3102	10	76.00	2	AL354695,	AL354695, AL357131
S/G/Y/R/B/O	NT_021905	AL451082	192647934	3	D1S2683	1	719.00	1	AC105940,	AC105940, AL451082
S/G/Y/R/B/O	NT_021905	AC105940	192673875	3	WI-1979	1	717.00	1	AL359090,	AC105940, AL359090
S/G/Y/R/B/O	NT_021905	AL513326	192822609	3
S/G/Y/R/B/O	NT_021905	AL359837	192876951	3	WI-7331	1	720.00	1		AL359837
S/G/Y/R/B/O	NT_021905	AC022000	192979691	1
S/G/Y/R/B/O	NT_021905	AC096676	193009149	1	WI-4497	1	721.00	1	AC022000,	AC022000, AC096676
S/G/Y/R/B/O	NT_021905	AC096676	193010428	1	WI-4586	1	722.00	1	AC022000,	AC022000, AC096676
S/G/Y/R/B/O	NT_021905	AL513343	193167971	2	D1S510	1	723.00	1		AL513343
S/G/Y/R/B/O	NT_021905	AC114402	193281646	1	WI-7116	1	724.00	1		AC114402, AL390207
S/G/Y/R/B/O	NT_021905	AC114402	193285120	1	IB2033	1	725.00	1		AC114402, AL390207
S/G/Y/R/B/O	NT_021905	AC114402	193285530	1	WI-6826	1	727.00	1		AC114402, AL390207
S/G/Y/R/B/O	NT_021905	AC114402	193306101	1	WI-3550	1	726.00	1		AC114402, AL390207
S/G/Y/R/B/O	NT_021905	AL445983	193411755	1	WI-9042	1	728.00	1	AC114402,	AC114402, AL445983, M21258
S/G/Y/R/B/O	NT_021905	AC096645	193437105	1
S/G/Y/R/B/O	NT_021905	AC073251	193601650	1
S/G/Y/R/B/O	NT_021905	AL592146	193654153	3	D1S2668	1	730.00	1		AF149301
S/G/Y/R/B/O	NT_021905	AL592114	193796650	1	WI-5221	1	729.00	1	AL627202,	AL592114, AL627202
S/G/Y/R/B/O	NT_021905	AL627202	193738689	1
S/G/Y/R/B/O	NT_021905	AC048369	193893915	1
S/G/Y/R/B/O	NT_021905	AL606489	193900145	1
S/G/Y/R/B/O	NT_021905	AL512306	194056348	3
S/G/Y/R/B/O	NT_021905	AL161793	194219271	1	D1S504	1	731.00	1		AL355486
S/G/Y/R/B/O	NT_021905	AC096675	194390084	3	AFM217XC7P	1	732.00	1		AC096675
S/G/Y/R/B/O	NT_021905	AC096675	194399512	3	D1S2872	1	733.00	1		AC096675
S/G/Y/R/B/O	NT_021905	AL391822	194456427	3
S/G/Y/R/B/O	NT_021905	AL583832	194569719	2
S/G/Y/R/B/O	NT_021905	AC018711	194816219	3	IB2462	1	738.00	1	AC098933,	AC018711, AC093422, AC098933
S/G/Y/R/B/O	NT_021905	AC018711	194816275	3	WI-6936	1	737.00	1	AC098933,	AC018711, AC093422, AC098933
S/G/Y/R/B/O	NT_021905	AC098933	194838111	1
S/G/Y/R/B/O	NT_021905	AC018373	194875070	1
S/G/Y/R/B/O	NT_021905	AC098936	195032261	1
S/G/Y/R/B/O	NT_021905	AL691515	195184126	1
S/G/Y/R/B/O	NT_021905	AC016539	195339206	1
S/G/Y/R/B/O	NT_021905	AL713873	195339212	1
S/G/Y/R/B/O	NT_021905	AL596326	195481237	2
S/G/Y/R/B/O	NT_021905	AL513213	195659546	3
S/G/Y/R/B/O	NT_021905	AL365207	195699286	3	CHLC.GATA8E12.454	1	670.00	1		AL365207
S/G/Y/R/B/O	NT_021905	AL356291	195862524	3	D1S2877	1	668.00	1		AL356291
S/G/Y/R/B/O	NT_021905	AL359435	195936229	3	D1S461	1	667.00	1		AL359435
S/G/Y/R/B/O	NT_021905	AL359435	195972917	3	WI-4315	1	671.00	1		AC040890, AL353144, AL359435

NT_021905 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_021905	AL359435	195983177	3	D1S428	1	669.00	1		AC026892, AL359435
S/G/Y/R/B/O	NT_021905	AL161796	196031159	3
S/G/Y/R/B/O	NT_021905	AL136371	196081298	3
S/G/Y/R/B/O	NT_021905	AL357974	196234900	3	WI-3496	1	672.00	1		AL357974
S/G/Y/R/B/O	NT_021905	AL591504	196320144	3
S/G/Y/R/B/O	NT_021905	AL359976	196468743	3
S/G/Y/R/B/O	NT_021905	AL365402	196505621	3
S/G/Y/R/B/O	NT_021905	AL354771	196693784	3
S/G/Y/R/B/O	NT_021905	AL391645	196965959	3	WI-3057	1	673.00	1		AC026654, AL391645
S/G/Y/R/B/O	NT_021905	AL158838	196975715	3
S/G/Y/R/B/O	NT_021905	AL354725	197144041	3
S/G/Y/R/B/O	NT_021905	AL139135	197146035	3
S/G/Y/R/B/O	NT_021905	AL391098	197353173	3	WI-2776	1	674.00	1	AC012581,	AC012581, AL391098
S/G/Y/R/B/O	NT_021905	AL138927	197416109	3
S/G/Y/R/B/O	NT_021905	AC011041	197579276	1
S/G/Y/R/B/O	NT_021905	AC012581	197613588	1
S/G/Y/R/B/O	NT_021905	AC074364	197619574	1
S/G/Y/R/B/O	NT_021905		-		D1S413	1	697.00	1	AL157402,	AL157402
S/G/Y/R/B/O	NT_021905		-		CHLC.GATA48B01	1	698.00	1	AL157402,	AL157402
S/G/Y/R/B/O	NT_021905		-		WI-10868	1	699.00	1	AC011778, AC026240, AC096631,	AC011778, AC026240, AC096631
S/G/Y/R/B/O	NT_021905		-		AFM319WH1	1	700.00	1	AC011778, AC026240, AC096631,	AC011778, AC026240, AC096631
S/G/Y/R/B/O	NT_021905		-		WI-5305	1	701.00	1	AC092018,	AC092018
S/G/Y/R/B/O	NT_021905		-		CHLC.ATA4D06	1	702.00	1	AC092018,	AC092018
S/G/Y/R/B/O	NT_021905		-		WI-2276	1	703.00	1	AC012200, AC099673,	AC012200, AC099673
S/G/Y/R/B/O	NT_021905		-		D1S2622	1	704.00	1	AC096633,	AC096633
S/G/Y/R/B/O	NT_021905		-		D1S477	1	705.00	1	AC073202, AC103925, Z98266,	AC073202, AC103925, Z98266
S/G/Y/R/B/O	NT_021905		-		WI-9272	1	706.00	1	AL390790,	AL390790, AY044273
S/G/Y/R/B/O	NT_021905		-		D1S1723	1	707.00	1	AC083954, AC096677,	AC083954, AC096677
S/G/Y/R/B/O	NT_021905		-		D1S2738	1	708.00	1	AL139159,	AL139159
S/G/Y/R/B/O	NT_021905		-		D1S1727	1	709.00	1	AL356953,	AL356953
S/G/Y/R/B/O	NT_021905		-		IB2043	1	710.00	1	AL645504,	AL645504
S/G/Y/R/B/O	NT_021905		-		D1S2686	1	712.00	0
S/G/Y/R/B/O	NT_021905		-		WI-6748	1	713.00	1	AC015973, AC053522, AL359096,	AC015973, AC053522, AL359096
S/G/Y/R/B/O	NT_021905		-		AFMA190WD5	1	714.00	1	AC015973, AC053522,	AC015973, AC053522
S/G/Y/R/B/O	NT_021905		-		CHLC.GATA25A11	1	715.00	1	AC015973, AL359096,	AC015973, AL359096
S/G/Y/R/B/O	NT_021905		-		D1S2655	1	716.00	1	AC015973, AC053522,	AC015973, AC053522