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  Chromosome 5 - YAC Map - Single Contig
 

Chromosome 5 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006654
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006654AC099509997873361      
S/G/Y/R/B/O NT_006654AC116344998249981      
S/G/Y/R/B/O NT_006654AC108107998351981      
S/G/Y/R/B/O NT_006654AC012660998405681      
S/G/Y/R/B/O NT_006654AC008951998809032      
S/G/Y/R/B/O NT_006654AC026143999090431      
S/G/Y/R/B/O NT_006654AC0116701000446511D5S6445328.001AC026143, AC108107, AC011670, AC026143, AC108107
S/G/Y/R/B/O NT_006654AC1041251000538442      
S/G/Y/R/B/O NT_006654AC0209001001307413      
S/G/Y/R/B/O NT_006654AC0089061003369333WI-80935329.001AC009126, AC008452, AC008508, AC008906, AC008963, AC009073, AC009126, AC026435
S/G/Y/R/B/O NT_006654AC0091261003939043      
S/G/Y/R/B/O NT_006654AC0088501005049853WI-66865331.002AC008907, AC008908, AC008850, AC008907, AC008908, AC022114
S/G/Y/R/B/O NT_006654AC0088501006120103CHLC.GATA3H065332.002AC008865, AC008907, AC008908, AC008850, AC008865, AC008905, AC008907, AC008908
S/G/Y/R/B/O NT_006654AC0088651006220303WI-783912409.002AL359678, AC008401, AC008865, AC008905, AL359678
S/G/Y/R/B/O NT_006654AC0088651006592183WI-67085333.001 AC008401, AC008865, AC008905
S/G/Y/R/B/O NT_006654AC0088651007057123WI-108505334.001 AC008401, AC008865, AC008905
S/G/Y/R/B/O NT_006654AC0088651007282163WI-63465335.001AC008883, AC008401, AC008865, AC008883, AC008905
S/G/Y/R/B/O NT_006654AC0088831008142393D5S4845336.001 AC008883
S/G/Y/R/B/O NT_006654AC0741331008542173      
S/G/Y/R/B/O NT_006654AC1067481009162333      
S/G/Y/R/B/O NT_006654AC0235261010629911      
S/G/Y/R/B/O NT_006654AC1080881010699271      
S/G/Y/R/B/O NT_006654AC0932581010888053      
S/G/Y/R/B/O NT_006654AC1122031011958801      
S/G/Y/R/B/O NT_006654AC0266991013164112      
S/G/Y/R/B/O NT_006654AC1134011013195173      
S/G/Y/R/B/O NT_006654AC0087881014419311      
S/G/Y/R/B/O NT_006654AC0113611015376773CHLC.GATA43E085355.001AC008788, AC026699, AC008788, AC011182, AC011361, AC026699
S/G/Y/R/B/O NT_006654AC0113611015770473CHLC.GATA30B075354.001AC008788, AC026699, AC008788, AC011361, AC026699
S/G/Y/R/B/O NT_006654AC0105901016258293AFMA124WA95352.001 AC011182
S/G/Y/R/B/O NT_006654AC0919871017519351CHLC.GATA73F065353.001 AC091987
S/G/Y/R/B/O NT_006654AC0558081017799071      
S/G/Y/R/B/O NT_006654AC0126121017926112      
S/G/Y/R/B/O NT_006654AC0089701017935723      
S/G/Y/R/B/O NT_006654AC0126021018336623      
S/G/Y/R/B/O NT_006654AC0995201018939903      
S/G/Y/R/B/O NT_006654AC0267331020345083      
S/G/Y/R/B/O NT_006654AC0083901021618753D5S6695351.001 AC008390
S/G/Y/R/B/O NT_006654AC0083901021742803D5S4335350.001 AC008390
S/G/Y/R/B/O NT_006654AC0932551022389573      
S/G/Y/R/B/O NT_006654AC0919311022895713      
S/G/Y/R/B/O NT_006654AC0165661024645803D5S6545349.001 AC015527, AC016566
S/G/Y/R/B/O NT_006654AC0919661026106833      
S/G/Y/R/B/O NT_006654AC0918941026621713      
S/G/Y/R/B/O NT_006654AC0105881028081803      
S/G/Y/R/B/O NT_006654AC0085051029369413D5S5055348.001AC010588, AC010588
S/G/Y/R/B/O NT_006654AC0087751029983103      
S/G/Y/R/B/O NT_006654AC0085191030682273      
S/G/Y/R/B/O NT_006654AC0104231032627603      
S/G/Y/R/B/O NT_006654AC0104061034084603D5S4095347.001AC010423, AC010406, AC010423


  NT_006654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006654AC0113621034753203AFMA114ZD55343.001 AC011362
S/G/Y/R/B/O NT_006654AC0113621035494993AFM063XD85345.001 AC008930
S/G/Y/R/B/O NT_006654AC0113621035495033D5S4565346.001 AC008930
S/G/Y/R/B/O NT_006654AC0084471036216463      
S/G/Y/R/B/O NT_006654AC0102501037730683WI-72055342.001AC008447, AC010277, AC012612, AC008447, AC010250, AC010277, AC012612, AC025463
S/G/Y/R/B/O NT_006654AC1133731038065603      
S/G/Y/R/B/O NT_006654AC0087791038792983      
S/G/Y/R/B/O NT_006654AC0085011039525683      
S/G/Y/R/B/O NT_006654AC0994871041042663      
S/G/Y/R/B/O NT_006654AC1121861042325303      
S/G/Y/R/B/O NT_006654AC0941081042732203      
S/G/Y/R/B/O NT_006654AC1134171043992451      
S/G/Y/R/B/O NT_006654AC0188951044065091      
S/G/Y/R/B/O NT_006654AC0342071044505393      
S/G/Y/R/B/O NT_006654AC0088711046144813      
S/G/Y/R/B/O NT_006654AC1094811046866003      
S/G/Y/R/B/O NT_006654AC0089551047035402      
S/G/Y/R/B/O NT_006654AC0447931047283771      
S/G/Y/R/B/O NT_006654AC0102281048099952      
S/G/Y/R/B/O NT_006654AC0114211049491103WI-67445369.001AC116428, AC011421, AC116428
S/G/Y/R/B/O NT_006654AC1164281050053253WI-95165372.001AC034224, AC034224, AC116428
S/G/Y/R/B/O NT_006654AC1164281050054073NIB9165371.001AC034224, AC034224, AC116428
S/G/Y/R/B/O NT_006654AC0342241050631662      
S/G/Y/R/B/O NT_006654AC0084671050830521      
S/G/Y/R/B/O NT_006654AC0106251051348542      
S/G/Y/R/B/O NT_006654AC0919171052705753      
S/G/Y/R/B/O NT_006654AC1142871053444561      
S/G/Y/R/B/O NT_006654AC0245721053639033      
S/G/Y/R/B/O NT_006654AC0126031054917233CHLC.GATA49C055373.001AC008417, AC008417
S/G/Y/R/B/O NT_006654AC0126031054939823WI-43345374.001AC008417, AC008417, AC012603
S/G/Y/R/B/O NT_006654AC0084171055668803      
S/G/Y/R/B/O NT_006654AC0113661056734243      
S/G/Y/R/B/O NT_006654AC0922721058074323      
S/G/Y/R/B/O NT_006654AC0919141059147143      
S/G/Y/R/B/O NT_006654AC0935381060121323      
S/G/Y/R/B/O NT_006654AC0103491062315733AFM238WC55375.001 AC024184
S/G/Y/R/B/O NT_006654AC0126221062637613      
S/G/Y/R/B/O NT_006654AC1142901063820371      
S/G/Y/R/B/O NT_006654AC1068161063872392      
S/G/Y/R/B/O NT_006654AC0273131064397413D5S4855357.002AC106816, AC114958, AC027313, AC106816, AC114958
S/G/Y/R/B/O NT_006654AC1142851064752243      
S/G/Y/R/B/O NT_006654AC1149401065849231      
S/G/Y/R/B/O NT_006654AC0994931066461093      
S/G/Y/R/B/O NT_006654AC1142941067757371      
S/G/Y/R/B/O NT_006654AC0221031069330923WI-47975358.001AC026447, AC091983, AC022103, AC026447, AC091983
S/G/Y/R/B/O NT_006654AC0264471069588632      
S/G/Y/R/B/O NT_006654AC0919831069674721      
S/G/Y/R/B/O NT_006654AC0084711069684593      
S/G/Y/R/B/O NT_006654AC0264461070314383      
S/G/Y/R/B/O NT_006654AC0085731071669373      


  NT_006654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006654AC0900711072350872      
S/G/Y/R/B/O NT_006654AC0102461072659131      
S/G/Y/R/B/O NT_006654AC0102771074323621      
S/G/Y/R/B/O NT_006654AC0085471075463533      
S/G/Y/R/B/O NT_006654AC0088401076603583      
S/G/Y/R/B/O NT_006654AC0088211077730013      
S/G/Y/R/B/O NT_006654AC0089241079312153      
S/G/Y/R/B/O NT_006654AC0211241079667461      
S/G/Y/R/B/O NT_006654AC0210861079735963      
S/G/Y/R/B/O NT_006654AC1149321081106593      
S/G/Y/R/B/O NT_006654AC1133851081129063      
S/G/Y/R/B/O NT_006654AC0922781082984832      
S/G/Y/R/B/O NT_006654AC1143241084062311      
S/G/Y/R/B/O NT_006654AC1041231085328073      
S/G/Y/R/B/O NT_006654AC0221041086357943      
S/G/Y/R/B/O NT_006654AC1134051087964973      
S/G/Y/R/B/O NT_006654AC0086501089851983WI-71545376.001 AC008595, AC008650, AC016608, AC018756, AC020918
S/G/Y/R/B/O NT_006654AC0087821091395513D5S4925377.001AC010395, AC008782, AC010395, AC012610
S/G/Y/R/B/O NT_006654AC0103951091592953      
S/G/Y/R/B/O NT_006654AC0085721092306113      
S/G/Y/R/B/O NT_006654AC0104681093730023      
S/G/Y/R/B/O NT_006654AC0102751095041533WI-100515378.001 AC008709, AC010275, AC013744, AC016584
S/G/Y/R/B/O NT_006654AC0114221096669213      
S/G/Y/R/B/O NT_006654AC0084081097497373      
S/G/Y/R/B/O NT_006654AC0089671097552093      
S/G/Y/R/B/O NT_006654AC0221081100005783AFMA297ZF15380.001AC114297, AC022108, AC026229, AC109995, AC114297
S/G/Y/R/B/O NT_006654AC1142971100331311D5S20275379.001 AC114297
S/G/Y/R/B/O NT_006654AC1068071100603593      
S/G/Y/R/B/O NT_006654AC0085291103019703D5S20845360.001 AC008529
S/G/Y/R/B/O NT_006654AC0089521103477073      
S/G/Y/R/B/O NT_006654AC0088931104748693WI-46065359.001AC008913, AC010227, AC008893, AC008913, AC010227, AC026459, AC044795, AC073175, AC090072
S/G/Y/R/B/O NT_006654AC0102271105330163      
S/G/Y/R/B/O NT_006654AC0113491105607653      
S/G/Y/R/B/O NT_006654AC0087961105889993      
S/G/Y/R/B/O NT_006654AC0088001106257063WI-23285363.001AC008823, AC008800, AC008823, AC019347, AL355383
S/G/Y/R/B/O NT_006654AC0088001106541963D5S4755361.001AC008823, AC024587, AC008823, AC019347, AC024587, AL355383
S/G/Y/R/B/O NT_006654AC0088001106812563WI-10335362.001AC008823, AC024587, AC008800, AC008822, AC008823, AC019347, AC024587
S/G/Y/R/B/O NT_006654AC0245871106823323      
S/G/Y/R/B/O NT_006654AC0085861108088343      
S/G/Y/R/B/O NT_006654AC0114191108777852      
S/G/Y/R/B/O NT_006654AC0319941109125681      
S/G/Y/R/B/O NT_006654AC0086731109157362      
S/G/Y/R/B/O NT_006654AC0221091109181392      
S/G/Y/R/B/O NT_006654AC0254501109332813      
S/G/Y/R/B/O NT_006654AC0251821110881853WI-17375381.001AC008673, AC031994, AC008673, AC025182, AC031994
S/G/Y/R/B/O NT_006654AC0104951111528693      
S/G/Y/R/B/O NT_006654AC0102611111945073      
S/G/Y/R/B/O NT_006654AC1041261113054283      
S/G/Y/R/B/O NT_006654AC0102651114459683      
S/G/Y/R/B/O NT_006654AC0166171115575743D5S19655382.001 AC008564, AC016617


  NT_006654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006654AC1133531116365783      
S/G/Y/R/B/O NT_006654AC0221421118228593CHLC.GATA49E125341.002AC009042, AC016567, AC008377, AC008653, AC008815, AC009042, AC016567, AC022142, AC034212
S/G/Y/R/B/O NT_006654AC0165671118341473      
S/G/Y/R/B/O NT_006654AC0085221119943173WI-58115340.001AC022121, AC008522, AC022121, AC034212
S/G/Y/R/B/O NT_006654AC0221211119946223      
S/G/Y/R/B/O NT_006654AC0267781121784863      
S/G/Y/R/B/O NT_006654AC0089611122145281      
S/G/Y/R/B/O NT_006654AC0085611122476293      
S/G/Y/R/B/O NT_006654AC0104111123001363      
S/G/Y/R/B/O NT_006654AC0088561123412643      
S/G/Y/R/B/O NT_006654AC0847131124954931      
S/G/Y/R/B/O NT_006654AC0164091125026441      
S/G/Y/R/B/O NT_006654AC0273151125421593      
S/G/Y/R/B/O NT_006654AC0088231127741081CHLC.GATA64G101166.002AL603765, AC008823, AC021913, AL603765
S/G/Y/R/B/O NT_006654AC1133581130192671      
S/G/Y/R/B/O NT_006654AC1163581131022051      
S/G/Y/R/B/O NT_006654AC0516361131071481      
S/G/Y/R/B/O NT_006654AC1163111131788943      
S/G/Y/R/B/O NT_006654AC1133771133027991      
S/G/Y/R/B/O NT_006654AC0213811133223861      
S/G/Y/R/B/O NT_006654AC1133951134305691      
S/G/Y/R/B/O NT_006654AC0342301134643241      
S/G/Y/R/B/O NT_006654AC0246271134777411      
S/G/Y/R/B/O NT_006654AC0228531134909191      
S/G/Y/R/B/O NT_006654AC0254611135794582      
S/G/Y/R/B/O NT_006654AC0246331135887001      
S/G/Y/R/B/O NT_006654AC0841841136585221      
S/G/Y/R/B/O NT_006654AC1134161137081161      
S/G/Y/R/B/O NT_006654AC1094891138095982      
S/G/Y/R/B/O NT_006654AC0190451139860091      
S/G/Y/R/B/O NT_006654AC1067651139862673      
S/G/Y/R/B/O NT_006654AC0262801141494411      
S/G/Y/R/B/O NT_006654AC0089481141528753      
S/G/Y/R/B/O NT_006654AC0995151143295313      
S/G/Y/R/B/O NT_006654AC0255651144289261      
S/G/Y/R/B/O NT_006654 - WI-78195330.000AC008906, AC009126, AC008452, AC008508, AC008906, AC008963, AC009073, AC009126, AC026435
S/G/Y/R/B/O NT_006654 - WI-64625337.001AF064864, AF165176, AF064864, AF165176, AL163283
S/G/Y/R/B/O NT_006654 - AFM274YE55338.001AC012642, AC012642, AC021840, AC092333
S/G/Y/R/B/O NT_006654 - AFMC017XG55339.001AP002383, AC023756, AC032024, AP002383
S/G/Y/R/B/O NT_006654 - WI-86745344.000AC008649, AC008649
S/G/Y/R/B/O NT_006654 - D5S4605356.001AC008861, AC106797, AC008861, AC106797
S/G/Y/R/B/O NT_006654 - WI-43065364.001AC008513, AC092274, AC008490, AC008513, AC017092, AC092274
S/G/Y/R/B/O NT_006654 - AFMB327YC55365.001AC008462, AC044794, AC008462, AC044794
S/G/Y/R/B/O NT_006654 - WI-66005366.001AC008462, AC008462
S/G/Y/R/B/O NT_006654 - WI-28775367.001AC008462, AC044794, AC008462, AC044794
S/G/Y/R/B/O NT_006654 - CHLC.ATA4D105368.001AC008462, AC044794, AC008462, AC044794
S/G/Y/R/B/O NT_006654 - WI-69885370.001AL139098, AL139098, AL391242