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  Chromosome 5 - YAC Map - Single Contig
 

Chromosome 5 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_007072
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007072AC1068091333188871      
S/G/Y/R/B/O NT_007072AC0742561333370771      
S/G/Y/R/B/O NT_007072AC1067871334076263      
S/G/Y/R/B/O NT_007072AC0918181335850763WI-107635472.001 AC011833, AC091818
S/G/Y/R/B/O NT_007072AC0922701335924943      
S/G/Y/R/B/O NT_007072AC1067461336772703      
S/G/Y/R/B/O NT_007072AC0052131338642473WI-92595470.001 AC005213, AC011425, L81903
S/G/Y/R/B/O NT_007072AC0052131338726483D5S4795471.001 AC005213
S/G/Y/R/B/O NT_007072AC0051881338974253      
S/G/Y/R/B/O NT_007072AC0024481340121433      
S/G/Y/R/B/O NT_007072AC0024271341342653      
S/G/Y/R/B/O NT_007072AC1107211342044243WI-100475468.001AC002427, AC002427, AC110721, AC114301
S/G/Y/R/B/O NT_007072AC1107211342149293D5S3995469.001AC002427, AC002427, AC110721, AC114301
S/G/Y/R/B/O NT_007072AC1121781343336631      
S/G/Y/R/B/O NT_007072AC0085771343705793      
S/G/Y/R/B/O NT_007072AC0251691344997883WI-23705435.001 AC010461, AC025169
S/G/Y/R/B/O NT_007072AC0251691345282963FB25G25434.001 AC010461, AC025169
S/G/Y/R/B/O NT_007072AC0342351346454453WI-43785436.001AC113387, AC114304, AC011986, AC034235, AC113387, AC114304
S/G/Y/R/B/O NT_007072AC1143041346782971      
S/G/Y/R/B/O NT_007072AC1133871347384301      
S/G/Y/R/B/O NT_007072AC1149351347468321      
S/G/Y/R/B/O NT_007072AC1142761347664843      
S/G/Y/R/B/O NT_007072AC0085881350366323D5S20785440.001AC004038, AC004038, AC008437, AC008588, AC025753
S/G/Y/R/B/O NT_007072AC0085881350645263D5S6425437.001AC004038, AC004038, AC008437, AC008588
S/G/Y/R/B/O NT_007072AC0040381350742543      
S/G/Y/R/B/O NT_007072AC0046361351228273      
S/G/Y/R/B/O NT_007072AC0069591352823443D5S21205438.001 AC006959
S/G/Y/R/B/O NT_007072AC0086791353000661      
S/G/Y/R/B/O NT_007072AC0091751353239991      
S/G/Y/R/B/O NT_007072AC0262991353291091      
S/G/Y/R/B/O NT_007072AC1142961353422541      
S/G/Y/R/B/O NT_007072AC0251771353642321      
S/G/Y/R/B/O NT_007072AC0342531354136221      
S/G/Y/R/B/O NT_007072AC0230611354344732      
S/G/Y/R/B/O NT_007072AC0114091355025223      
S/G/Y/R/B/O NT_007072AC0046291355630583      
S/G/Y/R/B/O NT_007072AC0047481356765853      
S/G/Y/R/B/O NT_007072AC1133761357099763      
S/G/Y/R/B/O NT_007072AC0042201358999573      
S/G/Y/R/B/O NT_007072AC0639801359646943      
S/G/Y/R/B/O NT_007072AC0086611359951083D5S3935467.001AC026299, AC063980, AC008661, AC026299, AC063980
S/G/Y/R/B/O NT_007072AC0090141361565703      
S/G/Y/R/B/O NT_007072AC0052191362304283      
S/G/Y/R/B/O NT_007072AC0045031363048303      
S/G/Y/R/B/O NT_007072AC0024281363948873CHLC.GATA2H09.4955466.001 AC002428
S/G/Y/R/B/O NT_007072AC0114271364704853      
S/G/Y/R/B/O NT_007072AC0062901365474273      
S/G/Y/R/B/O NT_007072AC0040431365968083      
S/G/Y/R/B/O NT_007072AC0056131366727753      
S/G/Y/R/B/O NT_007072AC0057411367349053      


  NT_007072 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007072AC0042261368529413      
S/G/Y/R/B/O NT_007072AC0051961369603513      
S/G/Y/R/B/O NT_007072AC0047691370280903      
S/G/Y/R/B/O NT_007072AC0039551370973343      
S/G/Y/R/B/O NT_007072AC0042191371277093      
S/G/Y/R/B/O NT_007072AC0053731371830393      
S/G/Y/R/B/O NT_007072AC0084261372821113      
S/G/Y/R/B/O NT_007072AC0113601374266703      
S/G/Y/R/B/O NT_007072AC0085911374732503      
S/G/Y/R/B/O NT_007072AC0085281376314503WI-63935439.001AC008591, AC004498, AC008528, AC008591, AC011350
S/G/Y/R/B/O NT_007072AC0040371377170563      
S/G/Y/R/B/O NT_007072AC0091911377495803      
S/G/Y/R/B/O NT_007072AC0090161377765263      
S/G/Y/R/B/O NT_007072AC0084971378555673      
S/G/Y/R/B/O NT_007072AC0046221379242583      
S/G/Y/R/B/O NT_007072AC0042271379968983D5S21105441.001 AC002210, AC004227
S/G/Y/R/B/O NT_007072AC0055761380186873      
S/G/Y/R/B/O NT_007072AC0086951380614563      
S/G/Y/R/B/O NT_007072AC0055931382042393      
S/G/Y/R/B/O NT_007072AC0263981382780873      
S/G/Y/R/B/O NT_007072AC0257721383603133      
S/G/Y/R/B/O NT_007072AC0342281385379703WI-76975450.001AC009175, AC023171, AC034216, AC004511, AC009175, AC023171, AC034216, AC034228, AF365976
S/G/Y/R/B/O NT_007072AC0342161385538143      
S/G/Y/R/B/O NT_007072AC0639761386170243      
S/G/Y/R/B/O NT_007072AC0342201387341993D5S19845449.002AC004649, AC023861, AC004649, AC023861, AC034220, AC046165
S/G/Y/R/B/O NT_007072AC0085991387984303      
S/G/Y/R/B/O NT_007072AC0238611388428981      
S/G/Y/R/B/O NT_007072AB0166251388503373      
S/G/Y/R/B/O NT_007072AC0046281388707893      
S/G/Y/R/B/O NT_007072AC1163661389582631WI-71785444.001 AC079320, AC116366
S/G/Y/R/B/O NT_007072AC1163661389648791WI-26245446.001 AC002194, AC009015, AC079320, AC116366, L05072, L81766
S/G/Y/R/B/O NT_007072AC0040421390165943WI-70365445.001AC116366, AC004042, AC079320, AC116366, AF353265, J02971, J03478, L48478, X12706
S/G/Y/R/B/O NT_007072AC0040411390570253      
S/G/Y/R/B/O NT_007072AC0040391391354273WI-77435447.001AC074127, AC004039, AC074127, AF377331, L13029, L42079, U31120
S/G/Y/R/B/O NT_007072AC0040391391677773NIB11955448.001 AC004039, L81575, L81576
S/G/Y/R/B/O NT_007072AC0042371391818743      
S/G/Y/R/B/O NT_007072AC0047751392203253      
S/G/Y/R/B/O NT_007072AC0045001393017243      
S/G/Y/R/B/O NT_007072AC0102401393791023      
S/G/Y/R/B/O NT_007072AC1134101394833131      
S/G/Y/R/B/O NT_007072AC0741271394894701      
S/G/Y/R/B/O NT_007072AC0231711394959071      
S/G/Y/R/B/O NT_007072AC0086081395396523WI-7287X183.001AC025177, AF235098, AL359755, AC025177, AF151097, AF235098, AL359755
S/G/Y/R/B/O NT_007072AC0086081395519603D5S19955453.001 AC008605, AC008608
S/G/Y/R/B/O NT_007072AC0113361397005313      
S/G/Y/R/B/O NT_007072AC0071991397290023      
S/G/Y/R/B/O NT_007072AC1041091398757023IB7845455.001AC020780, AC109454, AC020780, AC104109, AC109454
S/G/Y/R/B/O NT_007072AC1094541399609843WI-57945456.001AC020780, AC011426, AC020780, AC109454
S/G/Y/R/B/O NT_007072AC1094541399655543WI-42075457.001AC020780, AC011426, AC020780, AC109454
S/G/Y/R/B/O NT_007072AC0046311400145543      


  NT_007072 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007072AC0053551400788643WI-7225458.001 AC005355
S/G/Y/R/B/O NT_007072AC1067631408630791D5S4585460.001AC010301, AC010301, AC106763
S/G/Y/R/B/O NT_007072AC0114331401112151      
S/G/Y/R/B/O NT_007072AC0162841401597391WI-103145459.001AC011433, AC106763, AC011433, AC016284, AC106763
S/G/Y/R/B/O NT_007072AC0051781402145373D5S20535451.001AC023061, AC005178, AC023061
S/G/Y/R/B/O NT_007072AC0051781402666363AFM240WA75454.001 AC005178
S/G/Y/R/B/O NT_007072AC0055711402942913D5S21175452.001 AC005571
S/G/Y/R/B/O NT_007072AC0046321403400513      
S/G/Y/R/B/O NT_007072AC0051951403618333      
S/G/Y/R/B/O NT_007072AC0106081404155293      
S/G/Y/R/B/O NT_007072AC0126141405415603      
S/G/Y/R/B/O NT_007072AC0103071406701101      
S/G/Y/R/B/O NT_007072AC1133451407295781      
S/G/Y/R/B/O NT_007072AC0207801408027721      
S/G/Y/R/B/O NT_007072AC0103011408641783      
S/G/Y/R/B/O NT_007072AC0090081411953842      
S/G/Y/R/B/O NT_007072AC0057381413037733WI-34755464.001 AC005738, AC011428
S/G/Y/R/B/O NT_007072AC0342061413609353      
S/G/Y/R/B/O NT_007072AC0090091414280963      
S/G/Y/R/B/O NT_007072AC0086701416025703D5S20565461.001AC004764, AC004764
S/G/Y/R/B/O NT_007072AC0047641416509503      
S/G/Y/R/B/O NT_007072AC0084061416971103WI-103125462.001 AC008406, AC027305
S/G/Y/R/B/O NT_007072AC0084061417001503D5S3965465.001 AC027305
S/G/Y/R/B/O NT_007072AC0102381418289623      
S/G/Y/R/B/O NT_007072AC0266911420242403D5S21155463.001 AC026691
S/G/Y/R/B/O NT_007072AC0220921420508883      
S/G/Y/R/B/O NT_007072AC0227721422356421      
S/G/Y/R/B/O NT_007072 - WI-44995432.001AC008682, AC010424, AC008682, AC010415, AC010424, AC026800
S/G/Y/R/B/O NT_007072 - WI-49075433.001AC010424, AC008721, AC010424
S/G/Y/R/B/O NT_007072 - D5S6665442.001AC004650, AC004650
S/G/Y/R/B/O NT_007072 - WI-4995443.001AC004777, AC004777