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  Chromosome 5 - YAC Map - Single Contig
 

Chromosome 5 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006431
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006431AC021525646889501      
S/G/Y/R/B/O NT_006431AC091862647217622      
S/G/Y/R/B/O NT_006431AC016561647717591      
S/G/Y/R/B/O NT_006431AC035143648181363AFMA053ZG95215.001AC021525, AC091862, AC021525, AC035143, AC091862
S/G/Y/R/B/O NT_006431AC008854649145343WI-69155214.001 AC008854
S/G/Y/R/B/O NT_006431AC008854649884513WI-60825216.001AC008898, AC008854, AC008898, AC021314
S/G/Y/R/B/O NT_006431AC008898649917943      
S/G/Y/R/B/O NT_006431AC109465650772933      
S/G/Y/R/B/O NT_006431AC092354652291113      
S/G/Y/R/B/O NT_006431AC008896653478223WI-108295217.001 AC008896, AC011111
S/G/Y/R/B/O NT_006431AC008896654045633WI-31335218.001AC008847, AC008847, AC008896, AC011111
S/G/Y/R/B/O NT_006431AC008847654064403      
S/G/Y/R/B/O NT_006431AC008868655236701WI-36635219.001 AC008868
S/G/Y/R/B/O NT_006431AC025776655414141      
S/G/Y/R/B/O NT_006431AC010341655499121      
S/G/Y/R/B/O NT_006431AC025477707301421WI-20015205.001AC016616, AC016616, AC025477
S/G/Y/R/B/O NT_006431AC008373655698432      
S/G/Y/R/B/O NT_006431AC016636656512743      
S/G/Y/R/B/O NT_006431AC008836657068533      
S/G/Y/R/B/O NT_006431AC026746658588073      
S/G/Y/R/B/O NT_006431AC016645660141313      
S/G/Y/R/B/O NT_006431AC094086660208811      
S/G/Y/R/B/O NT_006431AC026809660308201      
S/G/Y/R/B/O NT_006431AC026434661360223D5S1185200.001AC016599, AC008877, AC010379, AC016599, AC026434, AC034233
S/G/Y/R/B/O NT_006431AC016599661405433      
S/G/Y/R/B/O NT_006431AC091836662643973CHLC.GGAA9A125202.001 AC008877, AC091836
S/G/Y/R/B/O NT_006431AC091836663254083AFMA100ZF55201.001 AC091836
S/G/Y/R/B/O NT_006431AC034242664254383      
S/G/Y/R/B/O NT_006431AC016637665892693      
S/G/Y/R/B/O NT_006431AC008917667912513WI-64535204.001AC114982, AC008917, AC016605, AC114982
S/G/Y/R/B/O NT_006431AC114982668396721      
S/G/Y/R/B/O NT_006431AC008859668620643      
S/G/Y/R/B/O NT_006431AC016623670573783D5S6685213.001AC025776, AC016623, AC025776, AC073536
S/G/Y/R/B/O NT_006431AC092360672670693AFMA037WA55212.001AC018420, AC025455, AC018420, AC025455, AC092360
S/G/Y/R/B/O NT_006431AC025455672852462      
S/G/Y/R/B/O NT_006431AC016616673033612      
S/G/Y/R/B/O NT_006431AC099505673484853      
S/G/Y/R/B/O NT_006431AC025186673910433      
S/G/Y/R/B/O NT_006431AC025176674845713      
S/G/Y/R/B/O NT_006431AC016620675895433      
S/G/Y/R/B/O NT_006431AC008560676764113      
S/G/Y/R/B/O NT_006431AC008958677931033IB20135220.001 AC008828, AC008958, AC010357, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC016643678717063      
S/G/Y/R/B/O NT_006431AC010359679964783      
S/G/Y/R/B/O NT_006431AC016603681685433      
S/G/Y/R/B/O NT_006431AC025442681835863      
S/G/Y/R/B/O NT_006431AC008772682685663      
S/G/Y/R/B/O NT_006431AC010630683112032      
S/G/Y/R/B/O NT_006431AC113378683479961      
S/G/Y/R/B/O NT_006431AC010345683747463      


  NT_006431 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006431AC092353684767963      
S/G/Y/R/B/O NT_006431AC092373685939063      
S/G/Y/R/B/O NT_006431AC113365686887223      
S/G/Y/R/B/O NT_006431AC092349687323423D5S20895223.001 AC092349
S/G/Y/R/B/O NT_006431AC092349688314163D5S20725221.001AC016634, AC008943, AC016633, AC016634, AC092349
S/G/Y/R/B/O NT_006431AC016634689211983AFMA296ZE55222.001 AC008904, AC008943
S/G/Y/R/B/O NT_006431AC008872690357873D5S6475224.001 AC008872
S/G/Y/R/B/O NT_006431AC034208690941073      
S/G/Y/R/B/O NT_006431AC008920691204433      
S/G/Y/R/B/O NT_006431AC044799692214111      
S/G/Y/R/B/O NT_006431AC063978692353381      
S/G/Y/R/B/O NT_006431AC008480692358831      
S/G/Y/R/B/O NT_006431AC026445692399983      
S/G/Y/R/B/O NT_006431AC010420694078893D5S21215226.001AC010459, AC010420, AC010459
S/G/Y/R/B/O NT_006431AC010459694194482D5S20485225.002AC008459, AC008459, AC010459
S/G/Y/R/B/O NT_006431AC018420694340551      
S/G/Y/R/B/O NT_006431AC008965695483533IB4825211.001 AC008965
S/G/Y/R/B/O NT_006431AC008911696338713WI-57825210.001AC008965, AC008911, AC008965, AC020939, AC022163
S/G/Y/R/B/O NT_006431AC008911696828233D5S19565209.001 AC022163
S/G/Y/R/B/O NT_006431AC099519696860913      
S/G/Y/R/B/O NT_006431AC099504697693153WI-22955208.001AC008911, AC099519, AC008809, AC008911, AC099504, AC099519
S/G/Y/R/B/O NT_006431AC008558698987813D5S4275207.001AC099504, AC016646, AC099504
S/G/Y/R/B/O NT_006431AC113166700541813CHLC.GATA44D065206.001AC008558, AC008558, AC113166
S/G/Y/R/B/O NT_006431AC025445701922233      
S/G/Y/R/B/O NT_006431AC113420703768583      
S/G/Y/R/B/O NT_006431AC092331704821431      
S/G/Y/R/B/O NT_006431AC116364706442961      
S/G/Y/R/B/O NT_006431AC069163706920781      
S/G/Y/R/B/O NT_006431AC008459707465322D5S20485225.002AC010459, AC008459, AC010459
S/G/Y/R/B/O NT_006431AC110010708749301      
S/G/Y/R/B/O NT_006431AC112206709442333      
S/G/Y/R/B/O NT_006431AC106798711295233      
S/G/Y/R/B/O NT_006431AC024581713585043D5S20465227.001 AC024581
S/G/Y/R/B/O NT_006431AC010376714304743WI-23855228.001 AC010376, AC012316
S/G/Y/R/B/O NT_006431AC104120715192323      
S/G/Y/R/B/O NT_006431AC016564716360523      
S/G/Y/R/B/O NT_006431AC024579717242553      
S/G/Y/R/B/O NT_006431AC010280719230633D5S20195229.001 AC017093
S/G/Y/R/B/O NT_006431AC020941720637293D5S19675231.001AC022136, AC022136
S/G/Y/R/B/O NT_006431AC020941721258713AFMC020ZD15230.001AC022136, AC022136
S/G/Y/R/B/O NT_006431AC024567721886693CHLC.GATA52H105232.001 AC024567
S/G/Y/R/B/O NT_006431AC010236722133513      
S/G/Y/R/B/O NT_006431AC093523722617002      
S/G/Y/R/B/O NT_006431AC093226723805821      
S/G/Y/R/B/O NT_006431AC022136723868391      
S/G/Y/R/B/O NT_006431AC093248724375071D5S6295234.001 AC093248
S/G/Y/R/B/O NT_006431 - WI-12895203.002AC018963, AC034242, AC092342, AC008778, AC018963, AC022264, AC024036, AC034242, AC092342
S/G/Y/R/B/O NT_006431 - WI-78565233.001AC093223, AC109996, AC093223, AC109996