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  Chromosome 5 - YAC Map - Single Contig
 

Chromosome 5 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006713
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006713AC016559734781781      
S/G/Y/R/B/O NT_006713AC021994734791761      
S/G/Y/R/B/O NT_006713AC068682734950431      
S/G/Y/R/B/O NT_006713AC108106735213872      
S/G/Y/R/B/O NT_006713AC008851736219203      
S/G/Y/R/B/O NT_006713AC026775737523363      
S/G/Y/R/B/O NT_006713AC034227738856482      
S/G/Y/R/B/O NT_006713AC067814739487341      
S/G/Y/R/B/O NT_006713AC116340740360541AFM191WH25238.001AC034227, AC034227, AC116340
S/G/Y/R/B/O NT_006713AC034221741685531      
S/G/Y/R/B/O NT_006713AC025774741712162      
S/G/Y/R/B/O NT_006713AC021318742258151      
S/G/Y/R/B/O NT_006713AC093218743059431CHLC.GATA30E055241.001AC021318, AC021318, AC093218
S/G/Y/R/B/O NT_006713AC012609743784172AFMB332XE95242.001 AC012609
S/G/Y/R/B/O NT_006713AC012609743887812FB10E85239.001 AC012609
S/G/Y/R/B/O NT_006713AC012609743964152STSG-100055240.001 AC012609, L06237
S/G/Y/R/B/O NT_006713AC012609744203822IB3205243.001 AC012609
S/G/Y/R/B/O NT_006713AC026406744434503D5S3515237.001AC012609, AC012609, AC026406
S/G/Y/R/B/O NT_006713AC093278745642723      
S/G/Y/R/B/O NT_006713AC008457746926961      
S/G/Y/R/B/O NT_006713AC013508747004051      
S/G/Y/R/B/O NT_006713AC008886747348093CHLC.GATA22D095244.001AC008457, AC008457, AC008886
S/G/Y/R/B/O NT_006713AC063979748418863D5S6505245.001 AC008843, AC063979
S/G/Y/R/B/O NT_006713AC063979748480853WI-42255247.001 AC008843, AC020896, AC063979
S/G/Y/R/B/O NT_006713AC063979748557503D5S21225246.001 AC063979
S/G/Y/R/B/O NT_006713AC035140750033683      
S/G/Y/R/B/O NT_006713AC008953750890983D5S3575249.001 AC008953, AC009050
S/G/Y/R/B/O NT_006713AC008972751426973WI-68315248.001 AC008515
S/G/Y/R/B/O NT_006713AC020893752227063      
S/G/Y/R/B/O NT_006713AC020942753235243      
S/G/Y/R/B/O NT_006713AC035141753967662      
S/G/Y/R/B/O NT_006713AC072029754001821      
S/G/Y/R/B/O NT_006713AC116345754127951      
S/G/Y/R/B/O NT_006713AC093302754381303      
S/G/Y/R/B/O NT_006713AC093204755695611      
S/G/Y/R/B/O NT_006713AC099522755739412      
S/G/Y/R/B/O NT_006713AC018349756742441      
S/G/Y/R/B/O NT_006713AC114962757647421WI-100435263.001AC010377, AC027342, AC068682, AC010377, AC027342, AC068682, AC114962
S/G/Y/R/B/O NT_006713AC114962758584421D5S4245262.001AC068682, AC068682, AC114962
S/G/Y/R/B/O NT_006713AC027342758300373D5S19775260.001 AC027342
S/G/Y/R/B/O NT_006713AC008581758391152      
S/G/Y/R/B/O NT_006713AC010377758538431      
S/G/Y/R/B/O NT_006713AC010621758791503      
S/G/Y/R/B/O NT_006713AC025188760125233WI-95085261.001 AC020927, AC025188
S/G/Y/R/B/O NT_006713AC026706760622373      
S/G/Y/R/B/O NT_006713AC026725760936013      
S/G/Y/R/B/O NT_006713AC112173761893543      
S/G/Y/R/B/O NT_006713AC093251762921253      
S/G/Y/R/B/O NT_006713AC026783763542723      
S/G/Y/R/B/O NT_006713AC113404764627452      


  NT_006713 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006713AC106764764881751      
S/G/Y/R/B/O NT_006713AC008765765578542      
S/G/Y/R/B/O NT_006713AC108091765650053      
S/G/Y/R/B/O NT_006713AC026774766216433AFM310VG15251.001AC008765, AC008765
S/G/Y/R/B/O NT_006713AC026774766217373AFMA119XE15250.001AC008765, AC008765, AC026774, AC090066
S/G/Y/R/B/O NT_006713AC109476767013241      
S/G/Y/R/B/O NT_006713AC022414768371873      
S/G/Y/R/B/O NT_006713AC022422770991733IB37025266.001AC010234, AC010234, AC021464, AC022422
S/G/Y/R/B/O NT_006713AC010234771782883D5S19625265.001AC108173, AC010234, AC021464, AC108173
S/G/Y/R/B/O NT_006713AC108173772236083      
S/G/Y/R/B/O NT_006713AC026717773497423      
S/G/Y/R/B/O NT_006713AC035147774116133      
S/G/Y/R/B/O NT_006713AC108482775082673      
S/G/Y/R/B/O NT_006713AC024578776572713      
S/G/Y/R/B/O NT_006713AC024568776595223      
S/G/Y/R/B/O NT_006713AC008493777880723      
S/G/Y/R/B/O NT_006713AC112197778087661      
S/G/Y/R/B/O NT_006713AC015785778180001      
S/G/Y/R/B/O NT_006713AC104108779432852      
S/G/Y/R/B/O NT_006713AC010585781486563WI-67845269.001AC010252, AC010252, AC010585
S/G/Y/R/B/O NT_006713AC010585781498443WI-43825267.001AC010252, AC010252, AC010585
S/G/Y/R/B/O NT_006713AC010252783115453AFMB347YF95268.001 AC015454
S/G/Y/R/B/O NT_006713AC010252783150053D5S6465276.001 AC010252
S/G/Y/R/B/O NT_006713AC008802783531033      
S/G/Y/R/B/O NT_006713AC025755784355843      
S/G/Y/R/B/O NT_006713AC099485785109053      
S/G/Y/R/B/O NT_006713AC114963785880823      
S/G/Y/R/B/O NT_006713AC020937786228593      
S/G/Y/R/B/O NT_006713AC008502787056483      
S/G/Y/R/B/O NT_006713AC069033788054911      
S/G/Y/R/B/O NT_006713AC022110788150291      
S/G/Y/R/B/O NT_006713AC020898789032193      
S/G/Y/R/B/O NT_006713AC093270790480522      
S/G/Y/R/B/O NT_006713AC008482791848443      
S/G/Y/R/B/O NT_006713AC026779793568483      
S/G/Y/R/B/O NT_006713AC010344793651743      
S/G/Y/R/B/O NT_006713AC008496794069793      
S/G/Y/R/B/O NT_006713AC112184795334813      
S/G/Y/R/B/O NT_006713AC012636797068273      
S/G/Y/R/B/O NT_006713AC010260797901673      
S/G/Y/R/B/O NT_006713AC026410799126563      
S/G/Y/R/B/O NT_006713AC008771800596523      
S/G/Y/R/B/O NT_006713AC018764801711213      
S/G/Y/R/B/O NT_006713AC010279802441763      
S/G/Y/R/B/O NT_006713AC008387803699223      
S/G/Y/R/B/O NT_006713AC026702804730053      
S/G/Y/R/B/O NT_006713AC091868805601202      
S/G/Y/R/B/O NT_006713AC093283805646723      
S/G/Y/R/B/O NT_006713AC022138807709263      
S/G/Y/R/B/O NT_006713AC026796808582943      


  NT_006713 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006713AC091899809324553      
S/G/Y/R/B/O NT_006713AC106732810223043      
S/G/Y/R/B/O NT_006713AC091892811408323      
S/G/Y/R/B/O NT_006713AC026697812304023CHLC.GGAT14B025259.001AC091858, AC024548, AC026697, AC091858
S/G/Y/R/B/O NT_006713AC091858812417603      
S/G/Y/R/B/O NT_006713AC010444813011963      
S/G/Y/R/B/O NT_006713AC026405814082953WI-85715258.001 AC026405, AC041042
S/G/Y/R/B/O NT_006713AC093214815605193WI-68975256.001AC020566, AC020566
S/G/Y/R/B/O NT_006713AC093214815611453WI-45005257.001AC016594, AC020566, AC016594, AC016901, AC020566, AC093214
S/G/Y/R/B/O NT_006713AC016594816137913      
S/G/Y/R/B/O NT_006713AC010501816433232      
S/G/Y/R/B/O NT_006713AC116337816676021      
S/G/Y/R/B/O NT_006713AC020566816811561      
S/G/Y/R/B/O NT_006713AC008769817849732AFMA106WE55252.001 AC008769
S/G/Y/R/B/O NT_006713AC093259818223363      
S/G/Y/R/B/O NT_006713 - WI-98155253.001AC008897, AC016606, AC112183, AC008897, AC016606, AC016640, AC112183, AF232935
S/G/Y/R/B/O NT_006713 - STSG-99905254.001AC010245, AC026424, AC008488, AC010245, AC026424
S/G/Y/R/B/O NT_006713 - WI-71715255.001AC008897, AC112183, AC008897, AC016640, AC112183, AF273765
S/G/Y/R/B/O NT_006713 - WI-62725264.001AC023196, AC093535, AC099513, AC023196, AC093535, AC099513