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  Chromosome 5 - YAC Map - Single Contig
 

Chromosome 5 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006576
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006576AC10677223935102      
S/G/Y/R/B/O NT_006576AC06080624213221      
S/G/Y/R/B/O NT_006576AC02674024259711      
S/G/Y/R/B/O NT_006576AC11342824277321      
S/G/Y/R/B/O NT_006576AC11336325134341      
S/G/Y/R/B/O NT_006576AC01044225360942      
S/G/Y/R/B/O NT_006576AC08409825474891      
S/G/Y/R/B/O NT_006576AC06078926839871      
S/G/Y/R/B/O NT_006576AC06197426840651      
S/G/Y/R/B/O NT_006576AC06197227080381      
S/G/Y/R/B/O NT_006576AC11429127111641      
S/G/Y/R/B/O NT_006576AC00891327163471      
S/G/Y/R/B/O NT_006576AC08486927299511      
S/G/Y/R/B/O NT_006576AC09184927757651      
S/G/Y/R/B/O NT_006576AC02641228149442      
S/G/Y/R/B/O NT_006576AC01649828163661      
S/G/Y/R/B/O NT_006576AC09193328396752      
S/G/Y/R/B/O NT_006576AC09188928711391      
S/G/Y/R/B/O NT_006576AC02212928906621      
S/G/Y/R/B/O NT_006576AC01028129164943WI-272559.001 AC010281
S/G/Y/R/B/O NT_006576AC01028130078493D5S208858.001AC026711, AC010281, AC026711, AC027337
S/G/Y/R/B/O NT_006576AC02671130718923      
S/G/Y/R/B/O NT_006576AC10679931468793      
S/G/Y/R/B/O NT_006576AC01063432780903      
S/G/Y/R/B/O NT_006576AC11430333774733      
S/G/Y/R/B/O NT_006576AC02671934235723      
S/G/Y/R/B/O NT_006576AC02641535664113      
S/G/Y/R/B/O NT_006576AC02212736226403      
S/G/Y/R/B/O NT_006576AC01045137054713D5S406510.001 AC010451, AC010597
S/G/Y/R/B/O NT_006576AC02242438224983CHLC.GATA82H02511.001AC010269, AC010269, AC022424, AC026690
S/G/Y/R/B/O NT_006576AC02242438588933WI-2897512.001AC010269, AC010269, AC022424
S/G/Y/R/B/O NT_006576AC01026939620863AFM198YB2513.001AC091978, AC010269, AC091978
S/G/Y/R/B/O NT_006576AC09197839927032      
S/G/Y/R/B/O NT_006576AC09196740261963      
S/G/Y/R/B/O NT_006576AC01260742134413      
S/G/Y/R/B/O NT_006576AC02679942505343      
S/G/Y/R/B/O NT_006576AC02673643869123      
S/G/Y/R/B/O NT_006576AC00557245082233CHLC.GATA3E10.510542.001 AC010433
S/G/Y/R/B/O NT_006576AC00463345711353      
S/G/Y/R/B/O NT_006576AC00395446587193      
S/G/Y/R/B/O NT_006576AC00536747789593      
S/G/Y/R/B/O NT_006576AC00464848602383      
S/G/Y/R/B/O NT_006576AC00561050125743D5S667540.001 AC005610, AC093282
S/G/Y/R/B/O NT_006576AC00561051120703D5S478539.001 AC005610, AC026721, AC093282
S/G/Y/R/B/O NT_006576AC01062651211533IB1480541.001AC005610, AC005610, AC010626, AC026721, AC093282
S/G/Y/R/B/O NT_006576AC09199052229333      
S/G/Y/R/B/O NT_006576AC01262954004853D5S432538.001 AC012629, AC023112
S/G/Y/R/B/O NT_006576AC01262954128603WI-7320537.001 AC012629, AC023112
S/G/Y/R/B/O NT_006576AC10676054241343      
S/G/Y/R/B/O NT_006576AC11220055023242      


  NT_006576 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006576AC02624455101081      
S/G/Y/R/B/O NT_006576AC01632755131211      
S/G/Y/R/B/O NT_006576AC09233655845553      
S/G/Y/R/B/O NT_006576AC02518457127071      
S/G/Y/R/B/O NT_006576AC01264061324352IB744536.001AC008913, AC020920, AC034241, AC008913, AC012640, AC020920, AC034241
S/G/Y/R/B/O NT_006576AC01264061346192WI-6722534.001AC008913, AC020920, AC034241, AC008913, AC012640, AC020920, AC034241
S/G/Y/R/B/O NT_006576AC01264061454052WI-7989535.001AC020920, AC020920
S/G/Y/R/B/O NT_006576AC09187657339121      
S/G/Y/R/B/O NT_006576AC01113557344321      
S/G/Y/R/B/O NT_006576AC06397557355461      
S/G/Y/R/B/O NT_006576AC02546258575541WI-6634521.001AC020771, AC020771, AC025462
S/G/Y/R/B/O NT_006576AC02546279121331WI-9871520.001AC020771, AC020771, AC025462
S/G/Y/R/B/O NT_006576AC02699758644531      
S/G/Y/R/B/O NT_006576AC11636158664971      
S/G/Y/R/B/O NT_006576AC01027459163082      
S/G/Y/R/B/O NT_006576AC01046459686882      
S/G/Y/R/B/O NT_006576AC09195159725931      
S/G/Y/R/B/O NT_006576AC02092060503891      
S/G/Y/R/B/O NT_006576AC03424160752003      
S/G/Y/R/B/O NT_006576AC03422961666732      
S/G/Y/R/B/O NT_006576AC02292162679221      
S/G/Y/R/B/O NT_006576AC02517462824803      
S/G/Y/R/B/O NT_006576AC01034664223743WI-4410523.001AC022921, AC010346, AC021609, AC022921
S/G/Y/R/B/O NT_006576AC01034664236063WI-9255524.001AC022921, AC010346, AC021609, AC022921
S/G/Y/R/B/O NT_006576AC09330564617661      
S/G/Y/R/B/O NT_006576AC11495265229341      
S/G/Y/R/B/O NT_006576AC01043765585373      
S/G/Y/R/B/O NT_006576AC11336666279301      
S/G/Y/R/B/O NT_006576AC02645067181852      
S/G/Y/R/B/O NT_006576AC01039967694413      
S/G/Y/R/B/O NT_006576AC02457768114543D5S676519.001AC010399, AC010399, AC024577, AC025440, AC114944
S/G/Y/R/B/O NT_006576AC02734368552513      
S/G/Y/R/B/O NT_006576AC02575670684023WI-1755522.001AC091889, AC025756, AC091889
S/G/Y/R/B/O NT_006576AC10810071043673      
S/G/Y/R/B/O NT_006576AC02577071698433      
S/G/Y/R/B/O NT_006576AC11218173600602      
S/G/Y/R/B/O NT_006576AC02077173633911      
S/G/Y/R/B/O NT_006576AC01063573688321CHLC.GAAT4B03516.001AC020935, AC010635, AC020935
S/G/Y/R/B/O NT_006576AC01063573712661D5S635518.001AC020935, AC010635, AC020935
S/G/Y/R/B/O NT_006576AC09330773900461      
S/G/Y/R/B/O NT_006576AC02667075057421      
S/G/Y/R/B/O NT_006576AC02733475069911      
S/G/Y/R/B/O NT_006576AC02674576905142D5S2054514.001 AC026745
S/G/Y/R/B/O NT_006576AC02492877054521      
S/G/Y/R/B/O NT_006576AC06397477118511      
S/G/Y/R/B/O NT_006576AC01026677472742      
S/G/Y/R/B/O NT_006576AC06801577646051      
S/G/Y/R/B/O NT_006576AC01036677830683      
S/G/Y/R/B/O NT_006576AC01050080361253      
S/G/Y/R/B/O NT_006576AC02679781663413WI-4885515.001AC091988, AC022419, AC026797, AC091859, AC091988


  NT_006576 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006576AC02679782113783CHLC.GAAT1A12517.001 AC026797
S/G/Y/R/B/O NT_006576AC09198882248483      
S/G/Y/R/B/O NT_006576AC02093583078451      
S/G/Y/R/B/O NT_006576AC09184683370641      
S/G/Y/R/B/O NT_006576AC01907983443411      
S/G/Y/R/B/O NT_006576AC02750183884791      
S/G/Y/R/B/O NT_006576AC09191284073843      
S/G/Y/R/B/O NT_006576AC10677684989882      
S/G/Y/R/B/O NT_006576AC03421785842793      
S/G/Y/R/B/O NT_006576AC09196587075383      
S/G/Y/R/B/O NT_006576AC02732887654723D5S1957525.001 AC027328
S/G/Y/R/B/O NT_006576AC00208788000543      
S/G/Y/R/B/O NT_006576AC09193289193481      
S/G/Y/R/B/O NT_006576AC09193790871473      
S/G/Y/R/B/O NT_006576AC09189592551153D5S208526.001AC021088, AC021088, AC091895
S/G/Y/R/B/O NT_006576AC02108892707223      
S/G/Y/R/B/O NT_006576AC02733693373003      
S/G/Y/R/B/O NT_006576AC02244694765103CHLC.GATA3A04.16527.001 AC004615, AC022446
S/G/Y/R/B/O NT_006576AC02244694982813WI-6452529.001AC091906, AC004615, AC022446, AC091906
S/G/Y/R/B/O NT_006576AC02244695201543WI-3865528.001AC091906, AC004615, AC022446, AC091906
S/G/Y/R/B/O NT_006576AC09190695381263      
S/G/Y/R/B/O NT_006576AC05348596848641      
S/G/Y/R/B/O NT_006576AC02733596868921      
S/G/Y/R/B/O NT_006576AC01041697854042      
S/G/Y/R/B/O NT_006576AC03421498295503D5S630530.001 AC003015, AC034214
S/G/Y/R/B/O NT_006576AC03421499017663D5S2064531.001AC026787, AC026787
S/G/Y/R/B/O NT_006576AC02678799034863      
S/G/Y/R/B/O NT_006576AC09183899951783      
S/G/Y/R/B/O NT_006576AC091958100884543      
S/G/Y/R/B/O NT_006576AC010629102398473D5S1976533.001 AC002479, AC010629
S/G/Y/R/B/O NT_006576AC091905104081073CHLC.GATA21F08532.001AC027494, AC027494, AC091905
S/G/Y/R/B/O NT_006576AC112176105096871      
S/G/Y/R/B/O NT_006576AC026443105764633      
S/G/Y/R/B/O NT_006576AC025183106928072      
S/G/Y/R/B/O NT_006576AC023921107242941      
S/G/Y/R/B/O NT_006576AC021087107850782      
S/G/Y/R/B/O NT_006576AC010443109049471      
S/G/Y/R/B/O NT_006576AC113430109918641      
S/G/Y/R/B/O NT_006576AC114943110767371      
S/G/Y/R/B/O NT_006576AC026748112695791      
S/G/Y/R/B/O NT_006576AF119117112988423      
S/G/Y/R/B/O NT_006576AC022130114066741      
S/G/Y/R/B/O NT_006576AC114955114321551      
S/G/Y/R/B/O NT_006576AY007685114754753      
S/G/Y/R/B/O NT_006576AP001130115444831      
S/G/Y/R/B/O NT_006576AC010427116578081      
S/G/Y/R/B/O NT_006576AC027494116603941      
S/G/Y/R/B/O NT_006576AC073986116763011      
S/G/Y/R/B/O NT_006576AC010446116998851      
S/G/Y/R/B/O NT_006576AC116351117580971      


  NT_006576 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006576AC105412120842691