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  Chromosome 5 - YAC Map - Single Contig
 

Chromosome 5 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006859
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006859AC0448711445980951      
S/G/Y/R/B/O NT_006859AC0113801446115091      
S/G/Y/R/B/O NT_006859AC1163531462369671NIB19485484.001 AC005214, AC010687, AC116353
S/G/Y/R/B/O NT_006859AC0053691446471153WI-63165485.001AC116353, AC005369, AC010687, AC011398, AC116353
S/G/Y/R/B/O NT_006859AC0053691446839123STSG-99835486.001AC116353, AC005369, AC010687, AC116353
S/G/Y/R/B/O NT_006859AC0056091447210773      
S/G/Y/R/B/O NT_006859AC0084681448770103      
S/G/Y/R/B/O NT_006859AC0102231449782133D5S6585487.001AC044871, AC004776, AC008688, AC010223, AC025436, AC044871
S/G/Y/R/B/O NT_006859AC0057541450475253      
S/G/Y/R/B/O NT_006859AC0741301451637163      
S/G/Y/R/B/O NT_006859AC0057521451924073WI-108435498.001 AC005752, AC008579, AC008727
S/G/Y/R/B/O NT_006859AC0056181453373583WI-18985492.001 AC005618, AC008579
S/G/Y/R/B/O NT_006859AC0056181454138853D5S21195493.001 AC005618, AC008579, AC008890
S/G/Y/R/B/O NT_006859AC0087811454959813WI-72645491.001 AC005366, AC008781, AF052685, AF119570
S/G/Y/R/B/O NT_006859AC0087811454976293IB4755495.001 AC005366, AC008781, AF052685, AF119570
S/G/Y/R/B/O NT_006859AC0087811454999153IB16235494.001 AC005366, AC008781
S/G/Y/R/B/O NT_006859AC0087811455407973WI-20515496.001 AC005368, AC008781
S/G/Y/R/B/O NT_006859AC0087811456349463WI-23165497.002AC008439, AC022420, AC005368, AC008439, AC008781, AC022420
S/G/Y/R/B/O NT_006859AC0221341456360912      
S/G/Y/R/B/O NT_006859AC0113321456894042      
S/G/Y/R/B/O NT_006859AC0053521458210603      
S/G/Y/R/B/O NT_006859AC0053531459175533D5S6495431.001AC005352, AC005352, AC005353
S/G/Y/R/B/O NT_006859AC0686581459350963      
S/G/Y/R/B/O NT_006859AC1134091460640241      
S/G/Y/R/B/O NT_006859AC0224201461666352D5S20105499.001AC008439, AC010484, AC008439, AC010484, AC022420
S/G/Y/R/B/O NT_006859AC0084391461337781WI-23165497.002AC008781, AC022420, AC005368, AC008439, AC008781, AC022420
S/G/Y/R/B/O NT_006859AC0104841461718462      
S/G/Y/R/B/O NT_006859AC0113991463053471D5S21165483.001 AC011399
S/G/Y/R/B/O NT_006859AC0084381463765502      
S/G/Y/R/B/O NT_006859AC0046341464748343      
S/G/Y/R/B/O NT_006859AC0113791466197302WI-30665482.001AC011380, AC011379, AC011380
S/G/Y/R/B/O NT_006859AC0055751466339543      
S/G/Y/R/B/O NT_006859AC0262721466826991      
S/G/Y/R/B/O NT_006859AC0940801466857643      
S/G/Y/R/B/O NT_006859AC0102921467834423      
S/G/Y/R/B/O NT_006859AC0085231468448823AFMB290YC95481.001 AC008523
S/G/Y/R/B/O NT_006859AC0086671469362751      
S/G/Y/R/B/O NT_006859AC0262911471032531      
S/G/Y/R/B/O NT_006859AC1133611471045692      
S/G/Y/R/B/O NT_006859AC0057531471935773D5S19795500.001AC008439, AC010484, AC005753, AC008439, AC010484
S/G/Y/R/B/O NT_006859AC0941071472989673      
S/G/Y/R/B/O NT_006859AC0057401474471443WI-96725489.001 AC005740, AC010264
S/G/Y/R/B/O NT_006859AC0057401474471493WI-73665490.001 AC005740
S/G/Y/R/B/O NT_006859AC0103781475612143      
S/G/Y/R/B/O NT_006859AC0918251476979311WI-10565488.001 AC091825
S/G/Y/R/B/O NT_006859AC0114011477606192      
S/G/Y/R/B/O NT_006859AC0069581477762843      
S/G/Y/R/B/O NT_006859AC0047521478529733      
S/G/Y/R/B/O NT_006859AC0221181480671843      
S/G/Y/R/B/O NT_006859AC0104241481717593WI-49075433.001 AC008721, AC010424


  NT_006859 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006859AC0086821483072863WI-44995432.001AC010424, AC008682, AC010415, AC010424, AC026800
S/G/Y/R/B/O NT_006859AC0084021484919823      
S/G/Y/R/B/O NT_006859AC0114161485015623      
S/G/Y/R/B/O NT_006859AC0059151485884823      
S/G/Y/R/B/O NT_006859AC0045071487383023      
S/G/Y/R/B/O NT_006859AC0052211487566023      
S/G/Y/R/B/O NT_006859AC0935321488128263      
S/G/Y/R/B/O NT_006859AC0932841489394623      
S/G/Y/R/B/O NT_006859AC0087171490615621CHLC.ATA23E035514.001 AC008717
S/G/Y/R/B/O NT_006859AC0087151490921683      
S/G/Y/R/B/O NT_006859AC0087001492139053      
S/G/Y/R/B/O NT_006859AC0086311493114953      
S/G/Y/R/B/O NT_006859AC0114111494248603D5S6435516.001 AC011411
S/G/Y/R/B/O NT_006859AC0113551495591702      
S/G/Y/R/B/O NT_006859AC0245071495938421WI-73961453.002AL589734, AC013703, AC024507, AL589734, AL592186
S/G/Y/R/B/O NT_006859AC0113591496890743D5S4365515.001AC024507, AC024507
S/G/Y/R/B/O NT_006859AC0053511498528213      
S/G/Y/R/B/O NT_006859AC0052161498695783      
S/G/Y/R/B/O NT_006859AC0918871499805892      
S/G/Y/R/B/O NT_006859AC0275261499853021      
S/G/Y/R/B/O NT_006859AC0919591500515462      
S/G/Y/R/B/O NT_006859AC0113561501400913      
S/G/Y/R/B/O NT_006859AC0113961502023333      
S/G/Y/R/B/O NT_006859AC0113751502824603      
S/G/Y/R/B/O NT_006859AC0087281504010083WI-44475518.001 AC008728
S/G/Y/R/B/O NT_006859AC0087281504462933D5S20335519.001 AC008728
S/G/Y/R/B/O NT_006859AC0091861505417222      
S/G/Y/R/B/O NT_006859AC0113571505663223      
S/G/Y/R/B/O NT_006859AC0113861507874193WI-98295520.001AC091919, AC011386, AC021201, AC091919
S/G/Y/R/B/O NT_006859AC0919191508202282D5S6385521.001AC022527, AC022527, AC091919
S/G/Y/R/B/O NT_006859AC0919241508665172      
S/G/Y/R/B/O NT_006859AC0225271509071891      
S/G/Y/R/B/O NT_006859AC0102511509315133      
S/G/Y/R/B/O NT_006859AC0113381511067043      
S/G/Y/R/B/O NT_006859AC0091891511529833      
S/G/Y/R/B/O NT_006859AC0113731512550483      
S/G/Y/R/B/O NT_006859AC0087011514545613WI-67635522.001 AC008701
S/G/Y/R/B/O NT_006859AC1149371514558971      
S/G/Y/R/B/O NT_006859AC0114021514602133      
S/G/Y/R/B/O NT_006859AC0113701515310473      
S/G/Y/R/B/O NT_006859AC0114151516157033D5S4635523.001 AC011415
S/G/Y/R/B/O NT_006859AC0113521517155732D5S20905524.001 AC011352
S/G/Y/R/B/O NT_006859AC0113521517155752WI-103235525.001 AC011352
S/G/Y/R/B/O NT_006859AC0086151518003123D5S4345526.001 AC008615, AC114479
S/G/Y/R/B/O NT_006859AC0065241518627773      
S/G/Y/R/B/O NT_006859AC0087221518982813      
S/G/Y/R/B/O NT_006859AC1163341520011351      
S/G/Y/R/B/O NT_006859AC0062921520024623      
S/G/Y/R/B/O NT_006859AC0113461520480123      
S/G/Y/R/B/O NT_006859AC0919481521531503      


  NT_006859 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006859AC1149391522763641      
S/G/Y/R/B/O NT_006859AJ2432131522914403      
S/G/Y/R/B/O NT_006859AC0113901524112653      
S/G/Y/R/B/O NT_006859AC0919711524177972      
S/G/Y/R/B/O NT_006859AC0086271524570341WI-4735528.001 AC008627
S/G/Y/R/B/O NT_006859AC0086271524581701WI-48705527.001 AC008627
S/G/Y/R/B/O NT_006859AC0113541525108163      
S/G/Y/R/B/O NT_006859AC1163121527995363D5S4135529.001AC011364, AC011364, AC116312
S/G/Y/R/B/O NT_006859AC0113641528009223      
S/G/Y/R/B/O NT_006859AC0919401529934223WI-49105530.001 AC091940
S/G/Y/R/B/O NT_006859AC0126131530148433      
S/G/Y/R/B/O NT_006859AC0086811531769083      
S/G/Y/R/B/O NT_006859AC0210781532992113      
S/G/Y/R/B/O NT_006859AC1163601534286011      
S/G/Y/R/B/O NT_006859AC0113721534322391      
S/G/Y/R/B/O NT_006859AC0058951535782553      
S/G/Y/R/B/O NT_006859AC0113821536632163      
S/G/Y/R/B/O NT_006859AC0114061537448893      
S/G/Y/R/B/O NT_006859AC0084271538074293      
S/G/Y/R/B/O NT_006859AC0085451540029383AFMA189WF15531.001 AC008584
S/G/Y/R/B/O NT_006859AC0085451540160723WI-52085532.001 AC008545, AC008584
S/G/Y/R/B/O NT_006859AC0221001540284541      
S/G/Y/R/B/O NT_006859AC0410471541717791      
S/G/Y/R/B/O NT_006859AC0103171542260793D5S20175501.001AC091825, AC091825
S/G/Y/R/B/O NT_006859AC0052151543761323      
S/G/Y/R/B/O NT_006859AC0053701544646983WI-75655502.001 AC005370, AC010489, AC016560, X59065
S/G/Y/R/B/O NT_006859AC0053701544677933WI-78635503.001 AC005370, AC010489, AC016560, X59065
S/G/Y/R/B/O NT_006859AC0053701545151933WI-63845504.001 AC005370, AC016560
S/G/Y/R/B/O NT_006859AC0053701545285963WI-107715505.001 AC005370, AC016560, AC091822
S/G/Y/R/B/O NT_006859AC0055921545316693      
S/G/Y/R/B/O NT_006859AC0085331548356133D5S19725506.001AC012630, AC008533, AC012630
S/G/Y/R/B/O NT_006859AC0126301548552812      
S/G/Y/R/B/O NT_006859AC0113711548712081      
S/G/Y/R/B/O NT_006859AC0053481548749583      
S/G/Y/R/B/O NT_006859AC0055741549590903      
S/G/Y/R/B/O NT_006859AC0047821551521323WI-70125508.001 U80946
S/G/Y/R/B/O NT_006859AC0126341551904853WI-31305507.001AC091925, AC005601, AC012634, AC091925
S/G/Y/R/B/O NT_006859AC0919251552557132      
S/G/Y/R/B/O NT_006859AC0113881553369643      
S/G/Y/R/B/O NT_006859AC0084721554102143      
S/G/Y/R/B/O NT_006859AC0113831555352743D5S20145533.001 AC011383
S/G/Y/R/B/O NT_006859AC0084531555884753WI-100145535.001 AC008453, AC022091
S/G/Y/R/B/O NT_006859AC0084531556082323D5S4705534.001 AC008453, AC022091
S/G/Y/R/B/O NT_006859AC0084501556717763      
S/G/Y/R/B/O NT_006859AC0086431556860693      
S/G/Y/R/B/O NT_006859AC0104411557898573      
S/G/Y/R/B/O NT_006859AC0221061558623643      
S/G/Y/R/B/O NT_006859AC0086661559673123WI-51805536.001AC008641, AC008641, AC008666, AC106805
S/G/Y/R/B/O NT_006859AC0086411560558253      
S/G/Y/R/B/O NT_006859AC0113421562183393WI-75745537.001AC008385, AC008385, AC011342, AC011391


  NT_006859 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006859AC0083851562295603      
S/G/Y/R/B/O NT_006859AC0342051564430803WI-63515538.001AC011337, AC011337, AC025433, AC034205
S/G/Y/R/B/O NT_006859AC0113371564577343      
S/G/Y/R/B/O NT_006859AC0113741566123723WI-83145539.001 AC011374
S/G/Y/R/B/O NT_006859AC1099991566691243WI-42955540.001AC011374, AC011374, AC109999
S/G/Y/R/B/O NT_006859AC0919821567767693      
S/G/Y/R/B/O NT_006859AC0103121568549333      
S/G/Y/R/B/O NT_006859AC0086641569065233D5S20775541.001 AC008664, AC015702
S/G/Y/R/B/O NT_006859AC0103141570062073      
S/G/Y/R/B/O NT_006859AC0106101570987533      
S/G/Y/R/B/O NT_006859AC0087041571773803D5S6735542.002AC008678, AC079464, AC008678, AC008704, AC018759, AC079464
S/G/Y/R/B/O NT_006859 - WI-34915509.001AC016598, AC008645, AC008656, AC016598
S/G/Y/R/B/O NT_006859 - WI-34555510.001AC008407, AC008407, AC025981, AC068563
S/G/Y/R/B/O NT_006859 - D5S4025511.001AC011341, AC011341
S/G/Y/R/B/O NT_006859 - CHLC.ATA23A105512.001AC005194, AC010290, AC011353, AC005194, AC010290, AC011353
S/G/Y/R/B/O NT_006859 - AFM116YC55513.001AC005194, AC010290, AC005194, AC010290
S/G/Y/R/B/O NT_006859 - D5S2105517.001AC008689, AC008689