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  Chromosome 5 - YAC Map - Single Contig
 

Chromosome 5 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006788
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006788AC0087261602779951      
S/G/Y/R/B/O NT_006788AC1149591602834071      
S/G/Y/R/B/O NT_006788AC0224101603247753CHLC.GATA68A015558.001AC011368, AC011368
S/G/Y/R/B/O NT_006788AC0224101603461153D5S6625559.001AC114959, AC114959
S/G/Y/R/B/O NT_006788AC0113681603568163      
S/G/Y/R/B/O NT_006788AC0113511604286683      
S/G/Y/R/B/O NT_006788AC0114131605420453      
S/G/Y/R/B/O NT_006788AC0113471607434313D5S4875560.001AC010304, AC010304
S/G/Y/R/B/O NT_006788AC0103041607494883      
S/G/Y/R/B/O NT_006788AC0273081608221023AFM207WC115561.001 AC027308
S/G/Y/R/B/O NT_006788AC0113451610304763      
S/G/Y/R/B/O NT_006788AC0085351610993593      
S/G/Y/R/B/O NT_006788AC0165771611974983CHLC.GATA6E05.3765563.001 AC016577
S/G/Y/R/B/O NT_006788AC0254341612691353WI-84055562.001AC011414, AC011414, AC025434, AC026734
S/G/Y/R/B/O NT_006788AC0114141613057673      
S/G/Y/R/B/O NT_006788AC0084911613690003      
S/G/Y/R/B/O NT_006788AC0267771614661023      
S/G/Y/R/B/O NT_006788AC0113771615844363      
S/G/Y/R/B/O NT_006788AC0106091617580133D5S21125564.001AC009185, AC009185, AC010609
S/G/Y/R/B/O NT_006788AC0083891617628853      
S/G/Y/R/B/O NT_006788AC0091851617689543      
S/G/Y/R/B/O NT_006788AC0165711618155163      
S/G/Y/R/B/O NT_006788AC0086761618758183      
S/G/Y/R/B/O NT_006788AC1068011620565143      
S/G/Y/R/B/O NT_006788AC0086941672715642WI-55145565.001 AC008694
S/G/Y/R/B/O NT_006788AC0677621620780591      
S/G/Y/R/B/O NT_006788AC0919281621061023      
S/G/Y/R/B/O NT_006788AC0918841623904793FB22A85579.001AC067762, AC067762, AC091884
S/G/Y/R/B/O NT_006788AC0267721624588233      
S/G/Y/R/B/O NT_006788AC0086581625785612      
S/G/Y/R/B/O NT_006788AC0221201625820261      
S/G/Y/R/B/O NT_006788AC0084051625998171      
S/G/Y/R/B/O NT_006788AC0461411626159641      
S/G/Y/R/B/O NT_006788AC0087121626591813WI-66625580.001AC008405, AC008658, AC022120, AC046141, AC008405, AC008658, AC008712, AC022120, AC046141
S/G/Y/R/B/O NT_006788AC0087121626815493D5S19555582.001AC008405, AC022120, AC008405, AC022120
S/G/Y/R/B/O NT_006788AC0087121626967343D5S21185581.001AC008658, AC008658, AC008712
S/G/Y/R/B/O NT_006788AC0918821627941013      
S/G/Y/R/B/O NT_006788AC0919891628324523      
S/G/Y/R/B/O NT_006788AC0213641629953211      
S/G/Y/R/B/O NT_006788AC0163031630320851      
S/G/Y/R/B/O NT_006788AC0919441630557291      
S/G/Y/R/B/O NT_006788AC1081301630660981      
S/G/Y/R/B/O NT_006788AC0086111631728631      
S/G/Y/R/B/O NT_006788AC0210791632294763WI-70105583.001AC108130, AC021079, AC108130
S/G/Y/R/B/O NT_006788AC0210791633188473CHLC.GATA47H085584.001AC008611, AC108130, AC008611, AC021079, AC108130
S/G/Y/R/B/O NT_006788AF1651241633596003      
S/G/Y/R/B/O NT_006788AC0919261635555093      
S/G/Y/R/B/O NT_006788AC0919841636192343      
S/G/Y/R/B/O NT_006788AC0919081636745683      
S/G/Y/R/B/O NT_006788AC0919961636909193      


  NT_006788 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006788AC0919011638568483      
S/G/Y/R/B/O NT_006788AC0106021640589373D5S4225585.001 AC010224, AC069370
S/G/Y/R/B/O NT_006788AC0919211641479413      
S/G/Y/R/B/O NT_006788AC0211601643142591      
S/G/Y/R/B/O NT_006788AC1134141643359233      
S/G/Y/R/B/O NT_006788AC0919301644952633      
S/G/Y/R/B/O NT_006788AC0919761646032523      
S/G/Y/R/B/O NT_006788AC0084281647978583AFM311WG95586.001 AC008428
S/G/Y/R/B/O NT_006788AC0087231648254543D5S20935587.001 AC008723
S/G/Y/R/B/O NT_006788AC1122051649280083      
S/G/Y/R/B/O NT_006788AC0102911649862673      
S/G/Y/R/B/O NT_006788AC0113391650864723      
S/G/Y/R/B/O NT_006788AC1143211651644111      
S/G/Y/R/B/O NT_006788AC0257451652366401      
S/G/Y/R/B/O NT_006788AC0165781652388992      
S/G/Y/R/B/O NT_006788AC0084991653344143WI-4855598.001 AC008499, AC016552
S/G/Y/R/B/O NT_006788AC0084891654714613AFMA119VG55595.001AC008499, AC016578, AC008489, AC008499, AC016578, AC016579
S/G/Y/R/B/O NT_006788AC0084891655207203WI-19755594.001AC016578, AC008489, AC016578, AC016579
S/G/Y/R/B/O NT_006788AC0085621655860823      
S/G/Y/R/B/O NT_006788AC0083841656640093      
S/G/Y/R/B/O NT_006788AC0084151658248023D5S20325596.001AC008646, AC008415, AC008646, AC091927
S/G/Y/R/B/O NT_006788AC0084151658379353AFM198XB25597.001AC008646, AC008415, AC008646, AC091927
S/G/Y/R/B/O NT_006788AC0086461658944012      
S/G/Y/R/B/O NT_006788AC0104281659635263      
S/G/Y/R/B/O NT_006788AC0114031660182723      
S/G/Y/R/B/O NT_006788AC0086441661125263      
S/G/Y/R/B/O NT_006788AC0083961662128072      
S/G/Y/R/B/O NT_006788AC1094661662673123      
S/G/Y/R/B/O NT_006788AC0919071663687273      
S/G/Y/R/B/O NT_006788AC0919231665191773      
S/G/Y/R/B/O NT_006788AC0084161665926362      
S/G/Y/R/B/O NT_006788AC0087241666459823      
S/G/Y/R/B/O NT_006788AC0084461667506393WI-83805591.001 AC008446, AC010278
S/G/Y/R/B/O NT_006788AC0084461667997473D5S6215592.001 AC008446, AC024317
S/G/Y/R/B/O NT_006788AC0919741668030143      
S/G/Y/R/B/O NT_006788AC0919971669339673      
S/G/Y/R/B/O NT_006788AC0113921670501353      
S/G/Y/R/B/O NT_006788AC0086621671142401      
S/G/Y/R/B/O NT_006788AC0083761671815211      
S/G/Y/R/B/O NT_006788AC0086031673686813      
S/G/Y/R/B/O NT_006788AC0084321674381473D5S20665590.001AC008603, AC008603
S/G/Y/R/B/O NT_006788AC0084321675065353WI-23835588.001 AC008432, AC024342
S/G/Y/R/B/O NT_006788AP0015861676061081      
S/G/Y/R/B/O NT_006788AC0116881676187571      
S/G/Y/R/B/O NT_006788AC1067591676505703      
S/G/Y/R/B/O NT_006788AC0264071677522793WI-67595566.001 AC026407
S/G/Y/R/B/O NT_006788AC0113941678137033      
S/G/Y/R/B/O NT_006788AC0224111678549523      
S/G/Y/R/B/O NT_006788AC0086771678950733      
S/G/Y/R/B/O NT_006788AC0918801680505383      


  NT_006788 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006788AC0254371682580053D5S20495569.001AC091975, AL162332, AC025437, AC091975, AL162332
S/G/Y/R/B/O NT_006788AC0919751682619612      
S/G/Y/R/B/O NT_006788AL1623321682675882      
S/G/Y/R/B/O NT_006788AC0919521682761973      
S/G/Y/R/B/O NT_006788AC0126861684264411      
S/G/Y/R/B/O NT_006788AC0919001684314293      
S/G/Y/R/B/O NT_006788AC0935051686121083      
S/G/Y/R/B/O NT_006788AC0218001687230101      
S/G/Y/R/B/O NT_006788AC0216801687242911      
S/G/Y/R/B/O NT_006788AC0919621687367411      
S/G/Y/R/B/O NT_006788AC0919601688433572      
S/G/Y/R/B/O NT_006788AC0086981689431073      
S/G/Y/R/B/O NT_006788AC0251561689815253      
S/G/Y/R/B/O NT_006788AC0106131691004653D5S19785547.001AC025156, AC010613, AC025156
S/G/Y/R/B/O NT_006788AC0106131691286353D5S6705548.001AC025156, AC010613, AC025156
S/G/Y/R/B/O NT_006788AC0220991691642902      
S/G/Y/R/B/O NT_006788AC0102441692111413D5S4105549.001AC022099, AC010244, AC021239, AC022099, AC091991
S/G/Y/R/B/O NT_006788AC0102441692360713AFM205WB105546.001 AC010244, AC021239, AC091991
S/G/Y/R/B/O NT_006788AC0102321693222283      
S/G/Y/R/B/O NT_006788AC0220881694881483      
S/G/Y/R/B/O NT_006788AC0102951696003172WI-9245550.001 AC010295
S/G/Y/R/B/O NT_006788AC0102951696110602D5S20125555.001 AC010295
S/G/Y/R/B/O NT_006788AC0086721696268893      
S/G/Y/R/B/O NT_006788AC0086751697230823AFMA071ZF95552.001 AC008675, AC010367, AC018757
S/G/Y/R/B/O NT_006788AC0086751697660553D5S4975551.001 AC010367
S/G/Y/R/B/O NT_006788AC0086251698558793IB35035553.001 AC008625, AC008636, AC008636, AC106758
S/G/Y/R/B/O NT_006788AC0266881700155753FB25D105554.001AC022412, AC112175, AC022412, AC026688, AC112175
S/G/Y/R/B/O NT_006788AC0224121700232031      
S/G/Y/R/B/O NT_006788AP0020161700246841      
S/G/Y/R/B/O NT_006788AC1121691700258381      
S/G/Y/R/B/O NT_006788AC0084211700736071      
S/G/Y/R/B/O NT_006788AC0257471700956251      
S/G/Y/R/B/O NT_006788AC0084101701458822      
S/G/Y/R/B/O NT_006788AC0694891703142331      
S/G/Y/R/B/O NT_006788AC0083791703330593      
S/G/Y/R/B/O NT_006788AC1121751704135111      
S/G/Y/R/B/O NT_006788AC0104761704712283WI-34785556.001AC008410, AC025747, AC008410, AC010476, AC025747
S/G/Y/R/B/O NT_006788AC1100041706164873      
S/G/Y/R/B/O NT_006788AC0086851706605323      
S/G/Y/R/B/O NT_006788AC0105911707771413      
S/G/Y/R/B/O NT_006788AC1081291708881983      
S/G/Y/R/B/O NT_006788AC0094831709063943      
S/G/Y/R/B/O NT_006788AC1081161722816281AFM161XH85557.001 AC108116
S/G/Y/R/B/O NT_006788AC0919791712322893D5S20605568.001 AC068391, AC091979
S/G/Y/R/B/O NT_006788AC0919391712690823      
S/G/Y/R/B/O NT_006788AC0084421715750563D5S4125570.001 AC008442
S/G/Y/R/B/O NT_006788AC0113441716579992WI-57515572.001 AC011344
S/G/Y/R/B/O NT_006788AC0072001717156483WI-10055573.001 AC007200
S/G/Y/R/B/O NT_006788AC0113761717516782      
S/G/Y/R/B/O NT_006788AC0114181718446293AFM323TD15567.001AC011376, AC011376, AC011418


  NT_006788 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006788AC0086971719486033      
S/G/Y/R/B/O NT_006788AC0087031720503273      
S/G/Y/R/B/O NT_006788AC1149601722282071      
S/G/Y/R/B/O NT_006788AC0084001723134121      
S/G/Y/R/B/O NT_006788AC0096091724518101      
S/G/Y/R/B/O NT_006788 - D5S20385571.000  
S/G/Y/R/B/O NT_006788 - WI-23775574.001AC011348, AC011412, AC011348, AC011412
S/G/Y/R/B/O NT_006788 - WI-99295575.001AC068657, AC008633, AC068657
S/G/Y/R/B/O NT_006788 - D5S4035576.001AC008678, AC091842, AC008678, AC091842
S/G/Y/R/B/O NT_006788 - WI-30215577.001AC008609, AC112191, AC008609, AC112191
S/G/Y/R/B/O NT_006788 - AFMA081ZD55578.001AC112191, AC112191
S/G/Y/R/B/O NT_006788 - WI-52115589.000  
S/G/Y/R/B/O NT_006788 - WI-67185593.001AL512783, AC008647, AL512783