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  Chromosome 6 - YAC Map - Single Contig
 

Chromosome 6 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_033944
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944AC0684071184100001      
S/G/Y/R/B/O NT_033944AC0235561184134731      
S/G/Y/R/B/O NT_033944AC0169161184899051      
S/G/Y/R/B/O NT_033944AL3589521185391533      
S/G/Y/R/B/O NT_033944AL0220671185699853WI-65226373.001 AL022067, AL672292, AL683826
S/G/Y/R/B/O NT_033944AL0220671186220643AFM199WE9P6371.001 AL022067, AL672292, AL683826
S/G/Y/R/B/O NT_033944AL1335091187322293      
S/G/Y/R/B/O NT_033944AL1389171187556793      
S/G/Y/R/B/O NT_033944AL3568591187903513      
S/G/Y/R/B/O NT_033944AL1099201188202143      
S/G/Y/R/B/O NT_033944AL3592921189639193      
S/G/Y/R/B/O NT_033944AL3900741190303703WI-87596370.001 AC021808, AC025397, AL390074
S/G/Y/R/B/O NT_033944AL0803141191556303      
S/G/Y/R/B/O NT_033944AL6455281193168853      
S/G/Y/R/B/O NT_033944AL3555861193987623WI-68363373.001AC016916, AC016916, AL355586
S/G/Y/R/B/O NT_033944AL5915161195099483      
S/G/Y/R/B/O NT_033944AL5904891195922293      
S/G/Y/R/B/O NT_033944AL1219571197687993D6S2686383.001 AC022244, AL121957
S/G/Y/R/B/O NT_033944AL6719341198732923      
S/G/Y/R/B/O NT_033944AL0968161199325863      
S/G/Y/R/B/O NT_033944AL5125921200599063      
S/G/Y/R/B/O NT_033944AL5124901201206643      
S/G/Y/R/B/O NT_033944AL0245071201808333      
S/G/Y/R/B/O NT_033944AL1388291203331403      
S/G/Y/R/B/O NT_033944Z982001203404563D6S2786384.001 Z98200
S/G/Y/R/B/O NT_033944AL0785961205217703D6S15946385.001 AL078596, AL450329
S/G/Y/R/B/O NT_033944Z987421205721493WI-56946386.001 AC031989
S/G/Y/R/B/O NT_033944AL3561211206575113      
S/G/Y/R/B/O NT_033944AL3537061207774783CHLC.GATA3E076382.001 AL353706
S/G/Y/R/B/O NT_033944AL1627211208148353      
S/G/Y/R/B/O NT_033944AL1391061208657803WI-12406388.001 AL139106
S/G/Y/R/B/O NT_033944AL3916461208833583      
S/G/Y/R/B/O NT_033944AL3655091209555123      
S/G/Y/R/B/O NT_033944AL0968181210173123      
S/G/Y/R/B/O NT_033944Z951181210997903WI-40666389.001 AP001325, Z95118
S/G/Y/R/B/O NT_033944AL4451891211659363      
S/G/Y/R/B/O NT_033944AL3902081213004023      
S/G/Y/R/B/O NT_033944AL3553051213698583      
S/G/Y/R/B/O NT_033944AL3597121215550123      
S/G/Y/R/B/O NT_033944AL3597111216112433      
S/G/Y/R/B/O NT_033944AL1099471217345282      
S/G/Y/R/B/O NT_033944AL1393911218633883      
S/G/Y/R/B/O NT_033944AL1217881218713003      
S/G/Y/R/B/O NT_033944AL1334721220062793      
S/G/Y/R/B/O NT_033944AL5123031220936133      
S/G/Y/R/B/O NT_033944AL5908251221980213      
S/G/Y/R/B/O NT_033944AL5910761223148943CHLC.GATA6B06.1926390.001 AL591076
S/G/Y/R/B/O NT_033944AL5900091224487353WI-34906391.001 AC021847, AL590009, AL596453
S/G/Y/R/B/O NT_033944AL5905491224850893      
S/G/Y/R/B/O NT_033944AL6715181225077503      


  NT_033944 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944AL4450681225918093WI-47926392.001 AL445068
S/G/Y/R/B/O NT_033944AL0503501226443153      
S/G/Y/R/B/O NT_033944AC0024641227761893      
S/G/Y/R/B/O NT_033944AL5124301229510243D6S16476393.001 AC073180, AL512430
S/G/Y/R/B/O NT_033944AL6039141230365243      
S/G/Y/R/B/O NT_033944Z844801231467353WI-65416394.001 AC040894, AL606471, Z84480
S/G/Y/R/B/O NT_033944AL3652061231992453      
S/G/Y/R/B/O NT_033944AL3575151233280753D6S16986396.001 AL357515
S/G/Y/R/B/O NT_033944AL5909851234167583      
S/G/Y/R/B/O NT_033944AL3602271234168523      
S/G/Y/R/B/O NT_033944AL3589511235786903      
S/G/Y/R/B/O NT_033944AL5896431235843693      
S/G/Y/R/B/O NT_033944AL0803171235904433      
S/G/Y/R/B/O NT_033944AL5123251237596303WI-52596397.001 AL512325
S/G/Y/R/B/O NT_033944AL1363101237911943      
S/G/Y/R/B/O NT_033944AL0087301239019373AFMB334ZD16398.001 AL008730
S/G/Y/R/B/O NT_033944Z979891239527383D6S4046399.001 Z97989
S/G/Y/R/B/O NT_033944Z979891240116483D6S3026400.001 AC073580, Z97989
S/G/Y/R/B/O NT_033944AL1099161240723413      
S/G/Y/R/B/O NT_033944AL1580351242901253D6S4186401.001 AC062038
S/G/Y/R/B/O NT_033944AL1580351243310673AFMA116ZG96402.001 AL158035
S/G/Y/R/B/O NT_033944AL5122991243360723      
S/G/Y/R/B/O NT_033944Z992891244317053WI-44666404.001 Z99289
S/G/Y/R/B/O NT_033944Z992891244511153WI-11326405.001 Z99289
S/G/Y/R/B/O NT_033944Z992891244636663D6S4166403.001 Z99289
S/G/Y/R/B/O NT_033944AL5901061245813103      
S/G/Y/R/B/O NT_033944AL3652141245989843      
S/G/Y/R/B/O NT_033944AL3575141248882003WI-28286407.001 AC046163, AL357514
S/G/Y/R/B/O NT_033944AL3575141248913393CHLC.GATA316406.001 AC046163, AL357514
S/G/Y/R/B/O NT_033944AL3589421249495213      
S/G/Y/R/B/O NT_033944AL5910511249946813      
S/G/Y/R/B/O NT_033944AL3600851251212963      
S/G/Y/R/B/O NT_033944AL3600151252801063      
S/G/Y/R/B/O NT_033944AL5906801254330783      
S/G/Y/R/B/O NT_033944AL0496951255387843D6S4236408.001 AL049695
S/G/Y/R/B/O NT_033944AL1627201255568143      
S/G/Y/R/B/O NT_033944AL5896841256950303D6S2666409.001 AL391275
S/G/Y/R/B/O NT_033944AL0213261257601213D6S16036410.001 AL021326
S/G/Y/R/B/O NT_033944AL5131231258711033AFM147XG16411.001 AC022812
S/G/Y/R/B/O NT_033944AL3575191258822303      
S/G/Y/R/B/O NT_033944AL5903231260391513      
S/G/Y/R/B/O NT_033944AL6068401260782633      
S/G/Y/R/B/O NT_033944AL6719661261084413      
S/G/Y/R/B/O NT_033944AL1326601261687683D6S2616412.001 AC021838
S/G/Y/R/B/O NT_033944AL6719671262362683CHLC.GATA7A076414.001 AL135919, AL671967
S/G/Y/R/B/O NT_033944AL5903981262894313      
S/G/Y/R/B/O NT_033944AL3554981263794543D6S4016413.001 AL355498
S/G/Y/R/B/O NT_033944AL5005241265293463      
S/G/Y/R/B/O NT_033944AL1364461265697913      
S/G/Y/R/B/O NT_033944AL0213271267708073WI-48626415.001 AL021327, AL356425


  NT_033944 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944AL1388301267872263      
S/G/Y/R/B/O NT_033944AL5906381269290503      
S/G/Y/R/B/O NT_033944AL5909641269847573      
S/G/Y/R/B/O NT_033944AL5905501271833013      
S/G/Y/R/B/O NT_033944AL4493031272417073      
S/G/Y/R/B/O NT_033944AL3569591272876113      
S/G/Y/R/B/O NT_033944Z925431274036693WI-31956417.001 AC011159, AC021765, Z92543
S/G/Y/R/B/O NT_033944AL5124891274585963      
S/G/Y/R/B/O NT_033944Z844751276252483AFM185YD26418.001 Z84475
S/G/Y/R/B/O NT_033944AL3536241276302593      
S/G/Y/R/B/O NT_033944AL6068451276535833      
S/G/Y/R/B/O NT_033944AL6459911277722833      
S/G/Y/R/B/O NT_033944Z987531278194823WI-74966419.001 Z98753
S/G/Y/R/B/O NT_033944AL5124071279021523      
S/G/Y/R/B/O NT_033944AL0495491280185093D6S3036420.001 AL049549
S/G/Y/R/B/O NT_033944AL5900261280612633      
S/G/Y/R/B/O NT_033944AL3601551280724973      
S/G/Y/R/B/O NT_033944AL0214511282396063WI-35366422.001 AC013613, AL021451, AL357074
S/G/Y/R/B/O NT_033944AL0214511282495393WI-13516421.001 AC011954, AC013613, AL021451, AL357074
S/G/Y/R/B/O NT_033944AL3571411282674113      
S/G/Y/R/B/O NT_033944AL1219631283924953      
S/G/Y/R/B/O NT_033944AL1219451284999493      
S/G/Y/R/B/O NT_033944AL0503311286058113WI-95656423.001 AL050331, AL355373, AL590312
S/G/Y/R/B/O NT_033944AL5905421286244193      
S/G/Y/R/B/O NT_033944Z844881287388353WI-34406424.001 AC024657, AC025215, AL590312, Z84488
S/G/Y/R/B/O NT_033944AL4452241288279423      
S/G/Y/R/B/O NT_033944AL1219531288375593      
S/G/Y/R/B/O NT_033944AL1327951290449923AFM268VH56425.001 AL132795, AL356304
S/G/Y/R/B/O NT_033944AL3547161290751133      
S/G/Y/R/B/O NT_033944AL3552721291654453      
S/G/Y/R/B/O NT_033944AL3553581292708083      
S/G/Y/R/B/O NT_033944AL5903701294125333      
S/G/Y/R/B/O NT_033944AL5130101294436953      
S/G/Y/R/B/O NT_033944AL3549451294614103      
S/G/Y/R/B/O NT_033944Z988801296218313WI-78366428.001 AL355292, Z98880
S/G/Y/R/B/O NT_033944AL1326711297496393WI-20386426.001 AL132671
S/G/Y/R/B/O NT_033944Z859991298914673WI-20406427.001 AC026646, Z85999
S/G/Y/R/B/O NT_033944AL5899391299218773      
S/G/Y/R/B/O NT_033944AL5903031299839743      
S/G/Y/R/B/O NT_033944Z981721301212233WI-56996429.001 Z98172
S/G/Y/R/B/O NT_033944AL5906341301369703      
S/G/Y/R/B/O NT_033944AL1364781302473623CHLC.GATA11H016431.001 AL136478, AL357511
S/G/Y/R/B/O NT_033944AL4504051302794133      
S/G/Y/R/B/O NT_033944AL5906211303496673      
S/G/Y/R/B/O NT_033944Z953261305403563WI-23576430.002AL355479, AL355308, AL355479, Z95326
S/G/Y/R/B/O NT_033944AL4491961305489103      
S/G/Y/R/B/O NT_033944AL1333791305819463      
S/G/Y/R/B/O NT_033944AL5906151306936103      
S/G/Y/R/B/O NT_033944AL5899931307129563      
S/G/Y/R/B/O NT_033944Z994961308926023WI-777612293.001 AL136974, Z99496


  NT_033944 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944Z994961309483133CHLC.GATA22F0512294.001 AL355356
S/G/Y/R/B/O NT_033944AL3900691309573923      
S/G/Y/R/B/O NT_033944AL5131311310231033      
S/G/Y/R/B/O NT_033944AL1328741311311743      
S/G/Y/R/B/O NT_033944AL3652751312437123      
S/G/Y/R/B/O NT_033944AL1370091313766253D6S3046432.001 AL355502
S/G/Y/R/B/O NT_033944AL0227221314476803WI-73136433.001 AL022722
S/G/Y/R/B/O NT_033944AL0227221315009623D6S2876435.001 AL022722
S/G/Y/R/B/O NT_033944AL0227221315189373D6S16966434.001 AL022722
S/G/Y/R/B/O NT_033944AL1388861315653883      
S/G/Y/R/B/O NT_033944AL0786001315654213      
S/G/Y/R/B/O NT_033944AL3602151316989563CHLC.GATA81C126436.001 AL360215
S/G/Y/R/B/O NT_033944AL5899201317947643      
S/G/Y/R/B/O NT_033944AL4491651318124923      
S/G/Y/R/B/O NT_033944AL0802771319889403D6S2676437.001 AL080277, AL359768
S/G/Y/R/B/O NT_033944AL4491631320147723      
S/G/Y/R/B/O NT_033944AL5905451320279773      
S/G/Y/R/B/O NT_033944AL1623821321026863      
S/G/Y/R/B/O NT_033944AL1581351321562803      
S/G/Y/R/B/O NT_033944AL0496131322210343      
S/G/Y/R/B/O NT_033944AL1363151323409343      
S/G/Y/R/B/O NT_033944AL1391051324581613D6S4126438.001 AC022218, AL139105
S/G/Y/R/B/O NT_033944AL6068301324982833      
S/G/Y/R/B/O NT_033944AL6039041326169823D6S16576439.001 AC022218, AC023753
S/G/Y/R/B/O NT_033944AL5907311326631353      
S/G/Y/R/B/O NT_033944AL0968541328587183D6S16086440.001 AL096854
S/G/Y/R/B/O NT_033944AL3573321329015913      
S/G/Y/R/B/O NT_033944AL3575131329754823      
S/G/Y/R/B/O NT_033944AL5124461331530273      
S/G/Y/R/B/O NT_033944AC0648781332562423CHLC.GATA6D046441.001 AC064878
S/G/Y/R/B/O NT_033944AC0648781332563863CHLC.GATA22A076442.001 AC064878
S/G/Y/R/B/O NT_033944AL0355931333491183      
S/G/Y/R/B/O NT_033944AL3655081333747333      
S/G/Y/R/B/O NT_033944AL5902251334709483      
S/G/Y/R/B/O NT_033944AL5899101335359623      
S/G/Y/R/B/O NT_033944AL1390981337165063WI-69885370.001 AL139098, AL391242
S/G/Y/R/B/O NT_033944AL1387291337338543      
S/G/Y/R/B/O NT_033944AL5920791338093363      
S/G/Y/R/B/O NT_033944AL6038651338843833      
S/G/Y/R/B/O NT_033944AL5914721339548703      
S/G/Y/R/B/O NT_033944Z939311340820483D6S17126443.001 AC074368, Z93931
S/G/Y/R/B/O NT_033944AL6039161341796693      
S/G/Y/R/B/O NT_033944AL5962191341948383      
S/G/Y/R/B/O NT_033944AL5123231342779891      
S/G/Y/R/B/O NT_033944AL5915991344810323      
S/G/Y/R/B/O NT_033944AL1218461345252063      
S/G/Y/R/B/O NT_033944AL3581121345662583      
S/G/Y/R/B/O NT_033944AL1219541346573193      
S/G/Y/R/B/O NT_033944Z991291347011593WI-87536445.001 Z99129
S/G/Y/R/B/O NT_033944Z991291347118673WI-69076446.001 Z99129


  NT_033944 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944Z991291347118673IB4776444.001 Z99129
S/G/Y/R/B/O NT_033944AL5134811348315073      
S/G/Y/R/B/O NT_033944AL5122831348579302      
S/G/Y/R/B/O NT_033944AL6458111350115073      
S/G/Y/R/B/O NT_033944AC0109891350726721      
S/G/Y/R/B/O NT_033944AC0734601350770861      
S/G/Y/R/B/O NT_033944AC0341351350984791      
S/G/Y/R/B/O NT_033944AC0249211351264881      
S/G/Y/R/B/O NT_033944 - CHLC.ATA16B016387.000  
S/G/Y/R/B/O NT_033944 - WI-86336395.001AC000031, AL355310, AC000031, AC011780, AL353702, AL355310, M96233
S/G/Y/R/B/O NT_033944 - WI-93816416.001AL008987, AL008987