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  Chromosome 6 - YAC Map - Single Contig
 

Chromosome 6 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_025741
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL0354651405182553CHLC.ATA3E046458.001 AL035465
S/G/Y/R/B/O NT_025741AL5900061405320673      
S/G/Y/R/B/O NT_025741AL4510731405746563      
S/G/Y/R/B/O NT_025741AL0355941406957643      
S/G/Y/R/B/O NT_025741AL3576211408638503CHLC.ATA23C056460.001 AL357621
S/G/Y/R/B/O NT_025741AL0343491409823453D6S4076457.001 AL034349
S/G/Y/R/B/O NT_025741AL0343491410030583D6S16906461.001 AL034349
S/G/Y/R/B/O NT_025741AL3598271410099613      
S/G/Y/R/B/O NT_025741AL1370061410125013      
S/G/Y/R/B/O NT_025741AL0803151410485143      
S/G/Y/R/B/O NT_025741AL3598241412073943      
S/G/Y/R/B/O NT_025741AL5899911412340283      
S/G/Y/R/B/O NT_025741AL4454391412531523      
S/G/Y/R/B/O NT_025741AL5899271414200773      
S/G/Y/R/B/O NT_025741AL5838531415963303WI-24056462.001 AL583853
S/G/Y/R/B/O NT_025741AL6699841416106253      
S/G/Y/R/B/O NT_025741AL5906131417244803STSG-99806463.001 AL590613
S/G/Y/R/B/O NT_025741AL5135271417923453      
S/G/Y/R/B/O NT_025741AL3561241419294661      
S/G/Y/R/B/O NT_025741AL4503101420360533      
S/G/Y/R/B/O NT_025741Z973521421910723WI-40046464.001 Z97352
S/G/Y/R/B/O NT_025741AL4510461422528673      
S/G/Y/R/B/O NT_025741AL3565791424854403D6S17056465.001 AL356579
S/G/Y/R/B/O NT_025741AL5838461425311753      
S/G/Y/R/B/O NT_025741AL3555811425851863      
S/G/Y/R/B/O NT_025741AL1219471427933853WI-47886468.001 AC022191, AC027030, AC055791, AL121947
S/G/Y/R/B/O NT_025741AL1219471428474413AFMA196XH16469.001 AC022191, AC027112, AC055791, AL121947
S/G/Y/R/B/O NT_025741AL4503301428644293      
S/G/Y/R/B/O NT_025741AL1371851429102863AFMA162TG16471.001 AC022191, AL137185
S/G/Y/R/B/O NT_025741AL1372511429435523WI-36536470.001 AL137251
S/G/Y/R/B/O NT_025741AL3572741431534043CHLC.GATA23F086467.001 AC025996, AC034140, AL357274
S/G/Y/R/B/O NT_025741AL5838031431762883      
S/G/Y/R/B/O NT_025741AL5900131432086573      
S/G/Y/R/B/O NT_025741AL1099381433237403WI-83216466.001 AL109938, AL355360
S/G/Y/R/B/O NT_025741AL5900141433325823      
S/G/Y/R/B/O NT_025741AL3589431433744341      
S/G/Y/R/B/O NT_025741AL3574961435052333D6S15726472.001 AL357496
S/G/Y/R/B/O NT_025741AL1372221435648923      
S/G/Y/R/B/O NT_025741AL1361101436755163      
S/G/Y/R/B/O NT_025741AL1370631437465953      
S/G/Y/R/B/O NT_025741AL0495461438982983D6S2626474.001 AL049546
S/G/Y/R/B/O NT_025741AL4452491439485113      
S/G/Y/R/B/O NT_025741AL1215751440226843D6S4576475.001 AC021167, AL121575
S/G/Y/R/B/O NT_025741AL1215751440727503WI-81026473.001 AC021167, AL121575
S/G/Y/R/B/O NT_025741AL1359041441309393      
S/G/Y/R/B/O NT_025741AL1573771441899643      
S/G/Y/R/B/O NT_025741AL1398051442700793D6S16566476.001 AL139805
S/G/Y/R/B/O NT_025741AL1173781443605273WI-33986477.001 AL117378
S/G/Y/R/B/O NT_025741AL3548661443705873      
S/G/Y/R/B/O NT_025741AL1333461444372133FB4G46481.001 AL133346


  NT_025741 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL0214081444947933WI-58666479.001 AL021408
S/G/Y/R/B/O NT_025741AL1173731446732423D6S4726478.001 AL117373
S/G/Y/R/B/O NT_025741AL0235781447772703D6S4136480.001 AL023578
S/G/Y/R/B/O NT_025741AL3570341447938963      
S/G/Y/R/B/O NT_025741AL5896911449214993      
S/G/Y/R/B/O NT_025741AL5135241449663413      
S/G/Y/R/B/O NT_025741AL0328211451072693      
S/G/Y/R/B/O NT_025741AL1377831452697203WI-14296482.001 AB061840, AL137783
S/G/Y/R/B/O NT_025741AL1391021453595273      
S/G/Y/R/B/O NT_025741AL5964431454579173      
S/G/Y/R/B/O NT_025741AL5911151454882223      
S/G/Y/R/B/O NT_025741AL3567741455779853      
S/G/Y/R/B/O NT_025741AL1219591456775483D6S9756483.001 AL121959
S/G/Y/R/B/O NT_025741AL3562421457485943      
S/G/Y/R/B/O NT_025741AL0244971458144273      
S/G/Y/R/B/O NT_025741AL4502701459550093      
S/G/Y/R/B/O NT_025741AL4503051460417943      
S/G/Y/R/B/O NT_025741AL0785861461877433CHLC.GATA23B126487.001 AC024539, AL078586
S/G/Y/R/B/O NT_025741AL0785861461940413D6S17226486.001 AC024539, AL078586
S/G/Y/R/B/O NT_025741AL1370111462197333      
S/G/Y/R/B/O NT_025741AL3561091463287213      
S/G/Y/R/B/O NT_025741AL0356991464000353WI-50546485.001 AC023293, AL035699
S/G/Y/R/B/O NT_025741AL4493631464585313      
S/G/Y/R/B/O NT_025741AL1358391465997203      
S/G/Y/R/B/O NT_025741AL3558811467132933      
S/G/Y/R/B/O NT_025741Z844861467860863D6S2706488.001 Z84486
S/G/Y/R/B/O NT_025741AL0968151468424103      
S/G/Y/R/B/O NT_025741AL0785901468741693      
S/G/Y/R/B/O NT_025741AL5961881470690913      
S/G/Y/R/B/O NT_025741AL1219701471367663      
S/G/Y/R/B/O NT_025741AL1219431472034733      
S/G/Y/R/B/O NT_025741AL0219391473808323WI-49436489.001 AL021939
S/G/Y/R/B/O NT_025741AL4451901473918133      
S/G/Y/R/B/O NT_025741AL3535961474569623      
S/G/Y/R/B/O NT_025741AL0236931476468883D6S18376490.001 AL023693, U22376
S/G/Y/R/B/O NT_025741AL0236931476702753WI-89836491.001 AL023693, U22376
S/G/Y/R/B/O NT_025741AL0236931477430603AFMA074ZG96492.001 AL023693
S/G/Y/R/B/O NT_025741AL0495521477533783      
S/G/Y/R/B/O NT_025741AL1335441478521063      
S/G/Y/R/B/O NT_025741AL5124261479640913      
S/G/Y/R/B/O NT_025741AL0356041480192153      
S/G/Y/R/B/O NT_025741AL1333191481927443WI-50676493.001 AL133319
S/G/Y/R/B/O NT_025741AL3601781484134853D6S16266495.001 AL360178, U54776
S/G/Y/R/B/O NT_025741AL5122901484464793D6S2926494.001 AL512290
S/G/Y/R/B/O NT_025741AL1388281486479073WI-50776498.001 AC022654, AL138828
S/G/Y/R/B/O NT_025741AL1217131486953113      
S/G/Y/R/B/O NT_025741AL0232841487975303WI-42276497.001 AL023284
S/G/Y/R/B/O NT_025741AL0232841489212723WI-27166496.001 AL023284
S/G/Y/R/B/O NT_025741AL1335111489303733      
S/G/Y/R/B/O NT_025741AL0245081489818623      


  NT_025741 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL1219331491365503      
S/G/Y/R/B/O NT_025741AL3570821493219173      
S/G/Y/R/B/O NT_025741AL3652231494333503CHLC.GATA32B036499.001 AL365223
S/G/Y/R/B/O NT_025741AL1359021494387663      
S/G/Y/R/B/O NT_025741AL0503371496500333UTR-96576500.001 AL050337, AL158138, AL445424
S/G/Y/R/B/O NT_025741AL3654371497238353WI-50026501.001 AL365437, AL445424
S/G/Y/R/B/O NT_025741AL3548561497436913      
S/G/Y/R/B/O NT_025741AL0235801498567373      
S/G/Y/R/B/O NT_025741AL3547551500036923      
S/G/Y/R/B/O NT_025741AL3562341501251813WI-50866502.001 AC058810, AC068118, AL356234
S/G/Y/R/B/O NT_025741AL3570601501673723      
S/G/Y/R/B/O NT_025741AL5914681503494813      
S/G/Y/R/B/O NT_025741AL5913971504027423      
S/G/Y/R/B/O NT_025741AL0235821504833883      
S/G/Y/R/B/O NT_025741AL3553621505528413D6S15876503.001 AL355362
S/G/Y/R/B/O NT_025741AL0314331505715733      
S/G/Y/R/B/O NT_025741AL3912401507007003      
S/G/Y/R/B/O NT_025741AL0310031507658633WI-26446504.001 AC036236, AL031003
S/G/Y/R/B/O NT_025741AL0310031508003023WI-45426505.001 AC036236, AL031003, AL161620
S/G/Y/R/B/O NT_025741AL3916691508657363      
S/G/Y/R/B/O NT_025741AL5913751509687513WI-97296506.001 AL591375
S/G/Y/R/B/O NT_025741AL5906111510260683      
S/G/Y/R/B/O NT_025741AL5906171511019563      
S/G/Y/R/B/O NT_025741AL1218341512265553      
S/G/Y/R/B/O NT_025741AL5910331514027153      
S/G/Y/R/B/O NT_025741AL5903081514203653      
S/G/Y/R/B/O NT_025741AL0317721515491993D6S16996507.001 AL031772
S/G/Y/R/B/O NT_025741AL0317721515690403WI-50586508.001 AL031772
S/G/Y/R/B/O NT_025741AL0317721516163203AFMA176XF56516.001 AL031772
S/G/Y/R/B/O NT_025741AL0317721516329293NIB15276509.001 AB033496, AL031772
S/G/Y/R/B/O NT_025741AL1588501516450273      
S/G/Y/R/B/O NT_025741AL5924341517362783      
S/G/Y/R/B/O NT_025741AL5924291518444863D6S4036510.001 AC104267
S/G/Y/R/B/O NT_025741AL0344511519706033D6S4716515.001 AC006571
S/G/Y/R/B/O NT_025741AL3902051521395323D6S16756513.001 AL390205
S/G/Y/R/B/O NT_025741AL3902051521457193D6S3146512.001 AL390205
S/G/Y/R/B/O NT_025741AL6068281522266943WI-50236514.001 AL606828
S/G/Y/R/B/O NT_025741AL5132161522532693      
S/G/Y/R/B/O NT_025741AL0503381523156203D6S16846511.001 AL050338
S/G/Y/R/B/O NT_025741AL3571461524234013      
S/G/Y/R/B/O NT_025741AL1387371525057953      
S/G/Y/R/B/O NT_025741AL0224771525757203      
S/G/Y/R/B/O NT_025741AL5899041526576933      
S/G/Y/R/B/O NT_025741AL0317711527253893      
S/G/Y/R/B/O NT_025741AL3591731528128413      
S/G/Y/R/B/O NT_025741AL3561371529806453      
S/G/Y/R/B/O NT_025741AL5914001531163823      
S/G/Y/R/B/O NT_025741AL0354461532784883WI-50926520.001 AC068949, AL035446
S/G/Y/R/B/O NT_025741AL3570841533878443D6S3086519.001 AL357084
S/G/Y/R/B/O NT_025741AL3570841533890503FB14E56517.001 AL357084


  NT_025741 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL3570801535124063D6S4536518.001 AL357080
S/G/Y/R/B/O NT_025741AL5961861535645883      
S/G/Y/R/B/O NT_025741AL6037571536240193      
S/G/Y/R/B/O NT_025741AL3555961537325393      
S/G/Y/R/B/O NT_025741AL5904861539113173      
S/G/Y/R/B/O NT_025741AL3567941539877133      
S/G/Y/R/B/O NT_025741AL5900291541501523      
S/G/Y/R/B/O NT_025741AL0498231542081633D6S16486521.001 AL049823
S/G/Y/R/B/O NT_025741AL5123651543116033      
S/G/Y/R/B/O NT_025741AL3561271543120541      
S/G/Y/R/B/O NT_025741AL5896741544510403      
S/G/Y/R/B/O NT_025741AL0335221545617043      
S/G/Y/R/B/O NT_025741AL3600071547672753AFM269ZG56522.001 AL360007
S/G/Y/R/B/O NT_025741AL0333771547866773      
S/G/Y/R/B/O NT_025741AL1619041549216673      
S/G/Y/R/B/O NT_025741AL3593131549873923      
S/G/Y/R/B/O NT_025741AL3553371550404803AFMC030WB96523.001 AC011723, AC036235, AL355337
S/G/Y/R/B/O NT_025741AL1361221551521063WI-48946524.001 AL136122
S/G/Y/R/B/O NT_025741AL0235841552090503CHLC.GATA68F066526.001 AF153836, AL023584
S/G/Y/R/B/O NT_025741AL3553071553361653      
S/G/Y/R/B/O NT_025741AL3553041553767643      
S/G/Y/R/B/O NT_025741AL0235811554532453      
S/G/Y/R/B/O NT_025741AL3917261555910923      
S/G/Y/R/B/O NT_025741AL4503351557120213      
S/G/Y/R/B/O NT_025741AL1361161557194103      
S/G/Y/R/B/O NT_025741AL5900301558201253      
S/G/Y/R/B/O NT_025741AL0313201558778763D6S2796527.001 AC009472
S/G/Y/R/B/O NT_025741AL3571171560132083D6S17046528.001 AC023219, AL357117
S/G/Y/R/B/O NT_025741AL3602281561058933      
S/G/Y/R/B/O NT_025741AL0785931562647783WI-26336529.001 AL078593
S/G/Y/R/B/O NT_025741AL0498441562844813WI-74746530.001 AL049844
S/G/Y/R/B/O NT_025741AL1097551564078553      
S/G/Y/R/B/O NT_025741AL0313901564974243      
S/G/Y/R/B/O NT_025741AL5123541565991703      
S/G/Y/R/B/O NT_025741AL1359171566038473      
S/G/Y/R/B/O NT_025741AL0244741567255773CHLC.ATA1F086531.001 AL024474
S/G/Y/R/B/O NT_025741AL5907041568031423      
S/G/Y/R/B/O NT_025741AL5904881568622393      
S/G/Y/R/B/O NT_025741AL5134751569897183      
S/G/Y/R/B/O NT_025741AL5131841571794703      
S/G/Y/R/B/O NT_025741AL3571491572608313      
S/G/Y/R/B/O NT_025741AL3573761574621303      
S/G/Y/R/B/O NT_025741AL1371221575074163      
S/G/Y/R/B/O NT_025741AL0503341576212033CHLC.GATA41E036532.001 AL050334
S/G/Y/R/B/O NT_025741AL0232831576380063      
S/G/Y/R/B/O NT_025741AL3567391577874843CHLC.GATA51G046533.001 AL356739
S/G/Y/R/B/O NT_025741AL3918181578552583      
S/G/Y/R/B/O NT_025741AL0311191579302023      
S/G/Y/R/B/O NT_025741AL3651931580459373      
S/G/Y/R/B/O NT_025741AL0238061581490723D6S17036534.001 AL023806


  NT_025741 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL3565991582475843      
S/G/Y/R/B/O NT_025741AL4511451583557833      
S/G/Y/R/B/O NT_025741AL0968671585095323WI-41786535.001 AL096867, AL353632
S/G/Y/R/B/O NT_025741AL5924231585783293      
S/G/Y/R/B/O NT_025741AL0317691586659353CHLC.GATA29B056536.001 AL031769
S/G/Y/R/B/O NT_025741AL0356981588438163WI-46616537.001 AL035698
S/G/Y/R/B/O NT_025741AL1335391589841783D6S9786538.001 AL133539
S/G/Y/R/B/O NT_025741AL1361651590075653      
S/G/Y/R/B/O NT_025741AL3595471590242163      
S/G/Y/R/B/O NT_025741AL1581991591533613      
S/G/Y/R/B/O NT_025741AL1389161592193963      
S/G/Y/R/B/O NT_025741AL5123451594024113      
S/G/Y/R/B/O NT_025741AL5126361595156853WI-50746540.001 AC074265, AL512636
S/G/Y/R/B/O NT_025741AL5126361596043043WI-47596539.001 AC013720, AC074265, AL512636
S/G/Y/R/B/O NT_025741AL3564151596112503      
S/G/Y/R/B/O NT_025741AL5907091597521493      
S/G/Y/R/B/O NT_025741AL3553651597906783      
S/G/Y/R/B/O NT_025741AL3548801599533283      
S/G/Y/R/B/O NT_025741AL0343501599976723WI-99166541.001 AL034350, AP001975
S/G/Y/R/B/O NT_025741AL5899061601021633      
S/G/Y/R/B/O NT_025741AL3652711601433433      
S/G/Y/R/B/O NT_025741AL0335041602593223      
S/G/Y/R/B/O NT_025741AL4451231603950373      
S/G/Y/R/B/O NT_025741AL5130091605156463      
S/G/Y/R/B/O NT_025741AL3593821605824333D6S9776544.001 AL359382
S/G/Y/R/B/O NT_025741AL3593821606725743WI-22856545.001 AL359382
S/G/Y/R/B/O NT_025741AL5131641608210413D6S3116543.001 AL513164
S/G/Y/R/B/O NT_025741AL5899401608518693      
S/G/Y/R/B/O NT_025741AL3575671608730303      
S/G/Y/R/B/O NT_025741AL0333781610130203WI-30016542.001 AC006599, AL033378
S/G/Y/R/B/O NT_025741AL1361341610252153      
S/G/Y/R/B/O NT_025741 - CHLC.GATA8G046484.001AP000885, AL163252, AP000885, AP001707
S/G/Y/R/B/O NT_025741 - CHLC.GATA112B126525.000 AF153836