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  Chromosome 6 - YAC Map - Single Contig
 

Chromosome 6 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_023399
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023399AL591073885100983      
S/G/Y/R/B/O NT_023399AL591030886780723      
S/G/Y/R/B/O NT_023399AL590426887911173      
S/G/Y/R/B/O NT_023399AL590663889952523      
S/G/Y/R/B/O NT_023399AL355612890502063      
S/G/Y/R/B/O NT_023399AL133460892125803      
S/G/Y/R/B/O NT_023399AL035466892967993WI-58076262.001 AL035466
S/G/Y/R/B/O NT_023399AL603648893271293      
S/G/Y/R/B/O NT_023399AL603833893786983      
S/G/Y/R/B/O NT_023399AL365222894168093      
S/G/Y/R/B/O NT_023399AL049595895859763AFM207YE7P6263.001 AL049595, AL390124
S/G/Y/R/B/O NT_023399AL390316896577353      
S/G/Y/R/B/O NT_023399AL591027897639763      
S/G/Y/R/B/O NT_023399AL603628898736113      
S/G/Y/R/B/O NT_023399AL590785899372023D6S15896261.001 AC023074, AC055116, AL590785
S/G/Y/R/B/O NT_023399AL591500900617643      
S/G/Y/R/B/O NT_023399AL050340901202273      
S/G/Y/R/B/O NT_023399AL353663902464623      
S/G/Y/R/B/O NT_023399AL391843903236373      
S/G/Y/R/B/O NT_023399AL356969903715093      
S/G/Y/R/B/O NT_023399AL512404905405933      
S/G/Y/R/B/O NT_023399AL035468905806973      
S/G/Y/R/B/O NT_023399AL121962906744023      
S/G/Y/R/B/O NT_023399AL121718908260543AFMA121YH56264.001 AL121718
S/G/Y/R/B/O NT_023399AL121718908261543D6S2846265.001 AL121718
S/G/Y/R/B/O NT_023399AL391709908373473      
S/G/Y/R/B/O NT_023399AL133226909224453D6S2866266.001 AL133226
S/G/Y/R/B/O NT_023399AL450327910949753WI-46666267.001 AL450327
S/G/Y/R/B/O NT_023399AL356776911330313      
S/G/Y/R/B/O NT_023399AL356374913014203      
S/G/Y/R/B/O NT_023399AL355796913225033      
S/G/Y/R/B/O NT_023399AL355379914744893      
S/G/Y/R/B/O NT_023399AL078601916134023WI-39666268.002AC012155, AC012155, AC023504, AL078601
S/G/Y/R/B/O NT_023399AL391840916375623      
S/G/Y/R/B/O NT_023399AL451064917471953      
S/G/Y/R/B/O NT_023399AL035700918317763D6S4606269.001 AL035700, AL450316
S/G/Y/R/B/O NT_023399AL078462919070173      
S/G/Y/R/B/O NT_023399AL590241919954263      
S/G/Y/R/B/O NT_023399AL132875920074873      
S/G/Y/R/B/O NT_023399AL133475921223963      
S/G/Y/R/B/O NT_023399AL591135922416143      
S/G/Y/R/B/O NT_023399AL391595922791793      
S/G/Y/R/B/O NT_023399AL049696925344663WI-91006272.001 AL049696
S/G/Y/R/B/O NT_023399AL049696925366343WI-75586271.001 AL049696
S/G/Y/R/B/O NT_023399AL359715925397533      
S/G/Y/R/B/O NT_023399AL596028926620323      
S/G/Y/R/B/O NT_023399AL590824927533353D6S17076273.001AC026880, AC026880, AL590824
S/G/Y/R/B/O NT_023399AL590035927691773      
S/G/Y/R/B/O NT_023399AL357892929668023CHLC.GATA62E126275.001 AL357892
S/G/Y/R/B/O NT_023399AL121930930884443      


  NT_023399 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023399AL137123932237783      
S/G/Y/R/B/O NT_023399AL365446932947153      
S/G/Y/R/B/O NT_023399AC016100933162171      
S/G/Y/R/B/O NT_023399AC016012933271131      
S/G/Y/R/B/O NT_023399AL445303933681263D6S4636276.001AC016012, AC016012, AL445303
S/G/Y/R/B/O NT_023399AL355352933859893      
S/G/Y/R/B/O NT_023399AL390057935556363      
S/G/Y/R/B/O NT_023399AL122017936561143      
S/G/Y/R/B/O NT_023399AL359693937353673      
S/G/Y/R/B/O NT_023399AL078599939276363WI-36786277.001 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939356853D6S4456278.001 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939383443WI-51706279.001 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL355294940138593      
S/G/Y/R/B/O NT_023399AL360157941147753      
S/G/Y/R/B/O NT_023399AL356492942906673      
S/G/Y/R/B/O NT_023399AL050333943608943WI-86766281.001 AC025610, AL050333
S/G/Y/R/B/O NT_023399AL050333944279813GCT16B086280.001 AC025610, AL050333
S/G/Y/R/B/O NT_023399AL121977944447503      
S/G/Y/R/B/O NT_023399AL132670945665593      
S/G/Y/R/B/O NT_023399AL596184947084033      
S/G/Y/R/B/O NT_023399AL353661947723811      
S/G/Y/R/B/O NT_023399AC012132948213181      
S/G/Y/R/B/O NT_023399AC026880948226061      
S/G/Y/R/B/O NT_023399AC073142948278331      
S/G/Y/R/B/O NT_023399AC048371948332531      
S/G/Y/R/B/O NT_023399AL450333949285183      
S/G/Y/R/B/O NT_023399AL450482950854823      
S/G/Y/R/B/O NT_023399AL034377951906663WI-37776283.001 AL034377, AL161441, AL355613
S/G/Y/R/B/O NT_023399AL450483952007533      
S/G/Y/R/B/O NT_023399AL357121952618743      
S/G/Y/R/B/O NT_023399AL139333953138593      
S/G/Y/R/B/O NT_023399AL121716954103023      
S/G/Y/R/B/O NT_023399AL049699955010463WI-73626285.001 AL049699, AL390998
S/G/Y/R/B/O NT_023399AL049699955579413CHLC.ATA10C066284.001 AL049699, AL390998
S/G/Y/R/B/O NT_023399AL136970955901173      
S/G/Y/R/B/O NT_023399AL391416956340003      
S/G/Y/R/B/O NT_023399AL355577957592783      
S/G/Y/R/B/O NT_023399AL121939957726523      
S/G/Y/R/B/O NT_023399AL109915959652233D6S16096282.001 AC019158
S/G/Y/R/B/O NT_023399AL109915959703863WI-44716286.001 AC019158, AL109915
S/G/Y/R/B/O NT_023399AL136972959990913      
S/G/Y/R/B/O NT_023399AL391281960501793      
S/G/Y/R/B/O NT_023399AL139232960547363      
S/G/Y/R/B/O NT_023399AL034347962091383D6S16346287.001 AL034347
S/G/Y/R/B/O NT_023399AL161621963092403      
S/G/Y/R/B/O NT_023399AL138742964058551      
S/G/Y/R/B/O NT_023399AL138728965244033      
S/G/Y/R/B/O NT_023399AL391815965513023      
S/G/Y/R/B/O NT_023399AL049550966623703WI-33086290.001 AL049550
S/G/Y/R/B/O NT_023399AL137010967169703      


  NT_023399 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023399AL590823967463823      
S/G/Y/R/B/O NT_023399AL445932967754623      
S/G/Y/R/B/O NT_023399AL590143969390123      
S/G/Y/R/B/O NT_023399AL035694970270083WI-40786288.001 AL035694, AL158814
S/G/Y/R/B/O NT_023399AL035694970721553AFMA119WD96289.001 AL035694, AL158814
S/G/Y/R/B/O NT_023399AL109941971630673CHLC.GATA112F026292.001 AL109941
S/G/Y/R/B/O NT_023399AL136312972632833      
S/G/Y/R/B/O NT_023399AL136095973192113      
S/G/Y/R/B/O NT_023399AL139806974532083WI-29486293.001 AL139806, AL353758
S/G/Y/R/B/O NT_023399AL122016975341223D6S16526294.001 AL122016, AL353758
S/G/Y/R/B/O NT_023399AL135903975751223      
S/G/Y/R/B/O NT_023399AL589666977452503      
S/G/Y/R/B/O NT_023399AL136082978741603      
S/G/Y/R/B/O NT_023399AL355615979483973      
S/G/Y/R/B/O NT_023399AL450338981247593      
S/G/Y/R/B/O NT_023399AL356601982738753      
S/G/Y/R/B/O NT_023399AL049545983649473      
S/G/Y/R/B/O NT_023399AL355354984689283      
S/G/Y/R/B/O NT_023399AL603964985218223      
S/G/Y/R/B/O NT_023399AL390125985468083      
S/G/Y/R/B/O NT_023399AL391417986855913      
S/G/Y/R/B/O NT_023399AL357272987749463      
S/G/Y/R/B/O NT_023399AL365189988677753      
S/G/Y/R/B/O NT_023399AL353133989718503WI-31786297.003AC108119, AC108119, AC109460, AL139126, AL353133
S/G/Y/R/B/O NT_023399AL512327990906363      
S/G/Y/R/B/O NT_023399AL121717991000773      
S/G/Y/R/B/O NT_023399AL157777992062243AFM342XF96298.001 AL157777
S/G/Y/R/B/O NT_023399AL157777992418693AFM296TF16295.001 AL157777
S/G/Y/R/B/O NT_023399AL138827993285773      
S/G/Y/R/B/O NT_023399AL139274994629153WI-35106300.001 AL139274
S/G/Y/R/B/O NT_023399AL139274995527313WI-89136299.001 AC005069, AL139274
S/G/Y/R/B/O NT_023399AL160258995727023      
S/G/Y/R/B/O NT_023399AL096817996035213WI-47026301.001 AL096817, AL137180
S/G/Y/R/B/O NT_023399AC021687996912251      
S/G/Y/R/B/O NT_023399 - WI-84556270.000AL049696, AL049696, AL138732
S/G/Y/R/B/O NT_023399 - WI-66996274.001AC023500, AC073896, AC023500, AC073896
S/G/Y/R/B/O NT_023399 - AFMB354XG16296.001 AC109460, AL139126