Home    Genome Browser    BLAT Search    Help
  Chromosome 6 - YAC Map - Single Contig
 

Chromosome 6 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_007299
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007299AL049697999947163CHLC.ATA1F126302.001 AL049697
S/G/Y/R/B/O NT_007299AL4511261000896963      
S/G/Y/R/B/O NT_007299AL1332111001962963      
S/G/Y/R/B/O NT_007299AL3569701002786823      
S/G/Y/R/B/O NT_007299AL1389191003491473D6S15956303.001 AL138919
S/G/Y/R/B/O NT_007299AL1389191003717943CHLC.ATC2C036304.001 AL138919
S/G/Y/R/B/O NT_007299AL5903921004041013      
S/G/Y/R/B/O NT_007299AL1219421005061123      
S/G/Y/R/B/O NT_007299AL1387231005880213      
S/G/Y/R/B/O NT_007299AL1360961006884673WI-98256305.001 AL136096, U73304
S/G/Y/R/B/O NT_007299AL1218351007037153      
S/G/Y/R/B/O NT_007299AL1390421008203063      
S/G/Y/R/B/O NT_007299AL1387191009279513      
S/G/Y/R/B/O NT_007299AL1390901010499803AFMB298ZG96306.001 AL139090
S/G/Y/R/B/O NT_007299AL1357791010564133      
S/G/Y/R/B/O NT_007299AL1334081011304933      
S/G/Y/R/B/O NT_007299AL1604031012489653      
S/G/Y/R/B/O NT_007299AL0968681012629953      
S/G/Y/R/B/O NT_007299AL4455301014146563      
S/G/Y/R/B/O NT_007299AL0793421015650703D6S16446307.001 AL079342
S/G/Y/R/B/O NT_007299AL3531351016186613      
S/G/Y/R/B/O NT_007299AL3536591017462143      
S/G/Y/R/B/O NT_007299AL1218331017800643      
S/G/Y/R/B/O NT_007299AL1398041018764873      
S/G/Y/R/B/O NT_007299AL1387171019231253AFM185XD106308.001 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1369711019826103      
S/G/Y/R/B/O NT_007299AL1591741020651103      
S/G/Y/R/B/O NT_007299AL0966781021563903      
S/G/Y/R/B/O NT_007299AL1588131022945193      
S/G/Y/R/B/O NT_007299AL3536921024327093D6S16136310.001 AL353692
S/G/Y/R/B/O NT_007299AL1217871024885873      
S/G/Y/R/B/O NT_007299AL1581361025950433      
S/G/Y/R/B/O NT_007299AL1173421026412563WI-55226309.001 AL117342
S/G/Y/R/B/O NT_007299AL1219411027656383D6S4626313.001 AC027156, AL121941
S/G/Y/R/B/O NT_007299AL1591641027824503      
S/G/Y/R/B/O NT_007299AL5906411028448143      
S/G/Y/R/B/O NT_007299AL1329961029068183WI-6516311.001 AC027156, AL132996
S/G/Y/R/B/O NT_007299AL5910521029445153      
S/G/Y/R/B/O NT_007299AL3915591030310583D6S15706314.001 AL391559
S/G/Y/R/B/O NT_007299AL1219641031281673WI-30316312.001 AC025387, AL121964, AL161435
S/G/Y/R/B/O NT_007299AL1218371031326873      
S/G/Y/R/B/O NT_007299AL1359181032189853      
S/G/Y/R/B/O NT_007299AL4452081033296013      
S/G/Y/R/B/O NT_007299AL3653351033902433      
S/G/Y/R/B/O NT_007299AL6631121035510243      
S/G/Y/R/B/O NT_007299AL6070791035791983      
S/G/Y/R/B/O NT_007299AL4493431037217673      
S/G/Y/R/B/O NT_007299AL0802841038585683D6S4506315.001 AC027194
S/G/Y/R/B/O NT_007299AL0802841038774653D6S16316316.001 AC027194, AL080284
S/G/Y/R/B/O NT_007299AL5126001039839043      


  NT_007299 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007299AL3553511041249763      
S/G/Y/R/B/O NT_007299AL1327661042394873WI-32996317.001 AL358935
S/G/Y/R/B/O NT_007299AL5906351043930323CHLC.GATA7B066321.001 AC026043
S/G/Y/R/B/O NT_007299AL5906351044062623D6S4586319.001AL592428, AC026043, AL592428
S/G/Y/R/B/O NT_007299AL5924281044873553D6S4446320.001 AC026043, AL592428
S/G/Y/R/B/O NT_007299AL5924281044911623D6S4176318.001AL603903, AC026043, AL592428, AL603903
S/G/Y/R/B/O NT_007299AL6039031044923513      
S/G/Y/R/B/O NT_007299AL5908141046643813AFM310XA96322.001 AL590814
S/G/Y/R/B/O NT_007299AL6037511046886243      
S/G/Y/R/B/O NT_007299AL5961791047200973      
S/G/Y/R/B/O NT_007299AL1334571049020523D6S2756323.001 AC009924, AL133457
S/G/Y/R/B/O NT_007299AL5913041049707273      
S/G/Y/R/B/O NT_007299AL5908691050056403      
S/G/Y/R/B/O NT_007299AL5902301050057343      
S/G/Y/R/B/O NT_007299AL1602651050748503      
S/G/Y/R/B/O NT_007299AL3599871052436033CHLC.GATA74B036324.002 AC021418, AL359987, AL450123
S/G/Y/R/B/O NT_007299AL5899471052664493      
S/G/Y/R/B/O NT_007299AL3569561054100643      
S/G/Y/R/B/O NT_007299AL1387311056042283      
S/G/Y/R/B/O NT_007299AL3548571057889123WI-73956325.001 AC023873, AL354857
S/G/Y/R/B/O NT_007299AL5910361058940543WI-44916327.001 AC009425, AC023873, AC025054, AL591036
S/G/Y/R/B/O NT_007299AL1219661059346153CHLC.GATA68H046326.001 AC009425, AC025054
S/G/Y/R/B/O NT_007299AL5915191060784943WI-48166328.001 AL590707, AL591519
S/G/Y/R/B/O NT_007299AL5903051061340273      
S/G/Y/R/B/O NT_007299AL3560941062203863      
S/G/Y/R/B/O NT_007299AL3913361064466353WI-24416329.001 AL391336
S/G/Y/R/B/O NT_007299AL5922171064942053      
S/G/Y/R/B/O NT_007299AL3569711066014483D6S3006330.001 AL356971
S/G/Y/R/B/O NT_007299AL1573781066788413      
S/G/Y/R/B/O NT_007299AL1392331067717263      
S/G/Y/R/B/O NT_007299AL0785951068772223      
S/G/Y/R/B/O NT_007299AL1359131070014023      
S/G/Y/R/B/O NT_007299AL1217241070790383CHLC.GATA68D056333.001 AL121724
S/G/Y/R/B/O NT_007299AL1217241070791273CHLC.GATA41G046332.001 AL121724
S/G/Y/R/B/O NT_007299AL1217241071282073D6S15866331.001 AL121724
S/G/Y/R/B/O NT_007299AL5131861071588523      
S/G/Y/R/B/O NT_007299AL5906701072490183CHLC.GATA108.896335.001 AL590670
S/G/Y/R/B/O NT_007299AL3652271073560573D6S4246334.001 AC025601
S/G/Y/R/B/O NT_007299AL0314461074705023WI-40426337.001 AL031446
S/G/Y/R/B/O NT_007299AL1359061074784133      
S/G/Y/R/B/O NT_007299 - WI-61336336.000