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  Chromosome 9 - YAC Map - Single Contig
 

Chromosome 9 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_008413
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008413AL5919683210603      
S/G/Y/R/B/O NT_008413AL1588323950073      
S/G/Y/R/B/O NT_008413AL1617255837523CHLC.GCT3G0599.001 AL161725
S/G/Y/R/B/O NT_008413AL1617257110993D9S177993.001 AC025306, AL161725
S/G/Y/R/B/O NT_008413AL3920897416173      
S/G/Y/R/B/O NT_008413AL1369798913073D9S185898.001 AL136979
S/G/Y/R/B/O NT_008413AL13636511951353AFMA113WA594.001 AL136365
S/G/Y/R/B/O NT_008413AL35897611954533      
S/G/Y/R/B/O NT_008413AL59147413054513      
S/G/Y/R/B/O NT_008413AL35649813274233      
S/G/Y/R/B/O NT_008413AL35893414564443WI-262595.001 AL358934
S/G/Y/R/B/O NT_008413AL35369615418123      
S/G/Y/R/B/O NT_008413AL35805317234291      
S/G/Y/R/B/O NT_008413AC02205317570921      
S/G/Y/R/B/O NT_008413AL35628418137493GCT17C0696.001 AL136978
S/G/Y/R/B/O NT_008413AL35359019491903      
S/G/Y/R/B/O NT_008413AL59164421071173      
S/G/Y/R/B/O NT_008413AL35907622028643      
S/G/Y/R/B/O NT_008413AL13875523397233      
S/G/Y/R/B/O NT_008413AL35366724996613      
S/G/Y/R/B/O NT_008413AL35361426679273      
S/G/Y/R/B/O NT_008413AL45046727870823      
S/G/Y/R/B/O NT_008413AL35472328619433      
S/G/Y/R/B/O NT_008413AL58967530198763      
S/G/Y/R/B/O NT_008413AL35907731276593      
S/G/Y/R/B/O NT_008413AL13354933081653      
S/G/Y/R/B/O NT_008413AL35494134703023      
S/G/Y/R/B/O NT_008413AL60363135613313      
S/G/Y/R/B/O NT_008413AL36520235633253      
S/G/Y/R/B/O NT_008413AL35497737384893      
S/G/Y/R/B/O NT_008413AL35357738999363      
S/G/Y/R/B/O NT_008413AL13707139591203      
S/G/Y/R/B/O NT_008413AL15801241449313D9S288910.001 AC016453
S/G/Y/R/B/O NT_008413AL15801242307763D9S1873913.001 AC016453, AL158012
S/G/Y/R/B/O NT_008413AL35909542534843      
S/G/Y/R/B/O NT_008413AL13328343145383D9S178911.001 AL133283
S/G/Y/R/B/O NT_008413AL13328343268763D9S1813912.001 AL133283
S/G/Y/R/B/O NT_008413AL16241944597062D9S1792914.001 AL162419
S/G/Y/R/B/O NT_008413AL16241945130562AFM260YH9915.001 AL162419
S/G/Y/R/B/O NT_008413AL16241945211482FB2G7916.001  
S/G/Y/R/B/O NT_008413AL16258746110083      
S/G/Y/R/B/O NT_008413AL13623147788233WI-7925917.001 AC023479, AL136231
S/G/Y/R/B/O NT_008413AL13623147805483WI-9463921.001 AC023479, AL136231
S/G/Y/R/B/O NT_008413AL13623147915883WI-6770919.001 AC023479, AL136231
S/G/Y/R/B/O NT_008413AL13623148376823D9S1686920.001 AL136231
S/G/Y/R/B/O NT_008413AL13623149013943WI-6832918.001 AC023479, AL136231, AL353142
S/G/Y/R/B/O NT_008413AL35315149143483      
S/G/Y/R/B/O NT_008413AL15814750249213      
S/G/Y/R/B/O NT_008413AL51335051951073      
S/G/Y/R/B/O NT_008413AL16145052120753      


  NT_008413 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008413AL13354753936443CHLC.GATA4F01922.001 AL133547
S/G/Y/R/B/O NT_008413AL13354753936543CHLC.GATA62F03924.001 AL133547
S/G/Y/R/B/O NT_008413AL13354753936823CHLC.GATA71C01923.001 AL133547
S/G/Y/R/B/O NT_008413AL13354754514473WI-1138926.001 AL133547
S/G/Y/R/B/O NT_008413AL13354754793003D9S1681925.001 AL133547
S/G/Y/R/B/O NT_008413AL13578654912863      
S/G/Y/R/B/O NT_008413AL16225357277763WI-5527927.001 AL162253
S/G/Y/R/B/O NT_008413AL35474458096313WI-10787928.001 AL354744
S/G/Y/R/B/O NT_008413AL13698058428643      
S/G/Y/R/B/O NT_008413AL36536060123263      
S/G/Y/R/B/O NT_008413AL35360661692493      
S/G/Y/R/B/O NT_008413AL16238462043083IB791929.001 AC022252, AL162384
S/G/Y/R/B/O NT_008413AL35374163597333WI-4805930.001 AL353741
S/G/Y/R/B/O NT_008413AL35374164292183D9S1852933.001 AL353741
S/G/Y/R/B/O NT_008413AL36022164648253      
S/G/Y/R/B/O NT_008413AL13348065501393WI-1931932.001 AC021645, AL133480
S/G/Y/R/B/O NT_008413AL13348065870033AFM150XG7931.001 AC021645, AL133480
S/G/Y/R/B/O NT_008413AL35371867201633WI-4409934.001 AL353718
S/G/Y/R/B/O NT_008413AL35371867257333WI-7214937.002AC108215, AC108215, AL353718
S/G/Y/R/B/O NT_008413AL35371867789393CHLC.GATA8A10935.001 AL353718
S/G/Y/R/B/O NT_008413AL35371867789393CHLC.GATA8E06936.001 AL353718
S/G/Y/R/B/O NT_008413AL16241168049923      
S/G/Y/R/B/O NT_008413AL35470768629561      
S/G/Y/R/B/O NT_008413AL44559270497613D9S281939.001 AL445592
S/G/Y/R/B/O NT_008413AL51341271817763CHLC.GGAT12H06938.001AL137020, AL137020, AL513412
S/G/Y/R/B/O NT_008413AL13702072503253      
S/G/Y/R/B/O NT_008413AL16144373683703WI-5271940.001 AL161443
S/G/Y/R/B/O NT_008413AL51331374946643D9S1849941.001 AL513313
S/G/Y/R/B/O NT_008413AL15770375955383WI-3535942.001AL391872, AL157703, AL391872
S/G/Y/R/B/O NT_008413AL39187277591233WI-3355944.001 AC023475, AL391872
S/G/Y/R/B/O NT_008413AL59150977704173      
S/G/Y/R/B/O NT_008413AL35469478752613      
S/G/Y/R/B/O NT_008413AL39198380284853      
S/G/Y/R/B/O NT_008413AL13592381733123WI-4878943.001 AL135923
S/G/Y/R/B/O NT_008413AL13578882601383      
S/G/Y/R/B/O NT_008413AL35777383562413      
S/G/Y/R/B/O NT_008413AL44592683890163      
S/G/Y/R/B/O NT_008413AL59039785631163WI-646116243.001 AC026466, AL590397
S/G/Y/R/B/O NT_008413AL13712586142653      
S/G/Y/R/B/O NT_008413AL35658486942333      
S/G/Y/R/B/O NT_008413AL58380588597223      
S/G/Y/R/B/O NT_008413AL45113089474503      
S/G/Y/R/B/O NT_008413AL66990890456783      
S/G/Y/R/B/O NT_008413AL59645190484053      
S/G/Y/R/B/O NT_008413AL35363892332802WI-10059946.001 AC016418, AL353638, AL356033
S/G/Y/R/B/O NT_008413AL59113393359853      
S/G/Y/R/B/O NT_008413AL59162294004623      
S/G/Y/R/B/O NT_008413AL35472294884063      
S/G/Y/R/B/O NT_008413AL35373396124523      
S/G/Y/R/B/O NT_008413AL15782697943063D9S144947.001 AL157826


  NT_008413 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008413AL39186498567813      
S/G/Y/R/B/O NT_008413AL51342298876013      
S/G/Y/R/B/O NT_008413AL137851100268253      
S/G/Y/R/B/O NT_008413AL441884100828573AFM275YB9948.001 AL441884
S/G/Y/R/B/O NT_008413AL441884101919663WI-3357945.001 AL441884
S/G/Y/R/B/O NT_008413AL390723102030933      
S/G/Y/R/B/O NT_008413AL133479104233273CHLC.GATA84D07949.001 AL133479
S/G/Y/R/B/O NT_008413AL590307104650333      
S/G/Y/R/B/O NT_008413AL137069104670271      
S/G/Y/R/B/O NT_008413AL356054106368793      
S/G/Y/R/B/O NT_008413AL135790107025813CHLC.GATA21A06950.001 AL135790
S/G/Y/R/B/O NT_008413AL135790107813163D9S168951.001 AL135790
S/G/Y/R/B/O NT_008413AL513024108463223      
S/G/Y/R/B/O NT_008413AL161788110869563AFMB292XG5954.001AL162413, AL161788, AL162413
S/G/Y/R/B/O NT_008413AL162413111995262D9S256952.001 AL162413
S/G/Y/R/B/O NT_008413AL354952112345473D9S269953.001 AL354952
S/G/Y/R/B/O NT_008413AL354992112588043      
S/G/Y/R/B/O NT_008413AL451129114307153      
S/G/Y/R/B/O NT_008413AL355672115511753WI-9748955.001 AL355672
S/G/Y/R/B/O NT_008413AL445586115929143      
S/G/Y/R/B/O NT_008413AL592227117913123      
S/G/Y/R/B/O NT_008413AL513332118448473      
S/G/Y/R/B/O NT_008413AL512596119673783      
S/G/Y/R/B/O NT_008413AL353595119885033      
S/G/Y/R/B/O NT_008413AL596262121541323      
S/G/Y/R/B/O NT_008413AL589678122139723WI-4388956.001 AL589678, AL596091
S/G/Y/R/B/O NT_008413AL357772123261933      
S/G/Y/R/B/O NT_008413AL162422124866983      
S/G/Y/R/B/O NT_008413AL353605125500093      
S/G/Y/R/B/O NT_008413AL139114126831633      
S/G/Y/R/B/O NT_008413AL138753129023083WI-7091958.001 AL138753
S/G/Y/R/B/O NT_008413AL157828129772533      
S/G/Y/R/B/O NT_008413AL353711131064443D9S267957.001 AL353711
S/G/Y/R/B/O NT_008413AL161449132448483CHLC.GATA50G08960.001 AL161449
S/G/Y/R/B/O NT_008413AL161449132493263D9S268959.001 AL161449
S/G/Y/R/B/O NT_008413AL353639133230913      
S/G/Y/R/B/O NT_008413AL162386134249133      
S/G/Y/R/B/O NT_008413AL583785135870513      
S/G/Y/R/B/O NT_008413AL354948137005873      
S/G/Y/R/B/O NT_008413AL138750137978653      
S/G/Y/R/B/O NT_008413AL353810139034583WI-2432961.001 AL353810
S/G/Y/R/B/O NT_008413AL158157139328133      
S/G/Y/R/B/O NT_008413AL691508141161231      
S/G/Y/R/B/O NT_008413AL360089141274503      
S/G/Y/R/B/O NT_008413AL441963142749971WI-6883962.001 AL133478, AL441963
S/G/Y/R/B/O NT_008413AL449443144160893      
S/G/Y/R/B/O NT_008413AL136366144671623D9S1869963.001 AL136366
S/G/Y/R/B/O NT_008413AL137017145476333D9S274964.001 AL137017
S/G/Y/R/B/O NT_008413AL159169147038503      
S/G/Y/R/B/O NT_008413AL390732147899053      


  NT_008413 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008413AL512643149330513      
S/G/Y/R/B/O NT_008413AL354672150478573      
S/G/Y/R/B/O NT_008413AL592293151111113      
S/G/Y/R/B/O NT_008413AL390958152666853      
S/G/Y/R/B/O NT_008413AL591393153304763      
S/G/Y/R/B/O NT_008413AL390246155033873      
S/G/Y/R/B/O NT_008413AL441925156587993WI-6705971.002AF199339, AL359998, AL391335, AF199339, AL359998, AL391335, AL441925
S/G/Y/R/B/O NT_008413AL359998156597723      
S/G/Y/R/B/O NT_008413AF199339156610093      
S/G/Y/R/B/O NT_008413AF192524156885261      
S/G/Y/R/B/O NT_008413AC022043157082691      
S/G/Y/R/B/O NT_008413 - D9S16391.001AL353795, AL353795, AL391668
S/G/Y/R/B/O NT_008413 - CHLC.GGAA8B0492.001AL590708, AC006312, AL590708
S/G/Y/R/B/O NT_008413 - WI-929497.002AC007292, AC079782, AC093904, AC104521, AC007292, AC079782, AC093904, AC104521