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  Chromosome 4 - YAC Map - Single Contig
 

Chromosome 4 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006204
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006204AC021566890510641      
S/G/Y/R/B/O NT_006204AC104827890530073      
S/G/Y/R/B/O NT_006204AC096953892458423AFMA059XC94350.001 AC011658, AC096953
S/G/Y/R/B/O NT_006204AC110076894610533D4S24624349.001 AC109819, AC110076
S/G/Y/R/B/O NT_006204AC097657895702143CHLC.GATA62A114348.001 AC097657
S/G/Y/R/B/O NT_006204AC097657896373683WI-100414345.001 AC097657
S/G/Y/R/B/O NT_006204AC105413896763523WI-37704346.001 AC105413
S/G/Y/R/B/O NT_006204AC105413897045623WI-92974347.001 AC105413
S/G/Y/R/B/O NT_006204AC079237897175243      
S/G/Y/R/B/O NT_006204AC093827897391423      
S/G/Y/R/B/O NT_006204AC093779899294053      
S/G/Y/R/B/O NT_006204AC092658899870683      
S/G/Y/R/B/O NT_006204AC108516901160011      
S/G/Y/R/B/O NT_006204AC112250902912801      
S/G/Y/R/B/O NT_006204AC093906903789193      
S/G/Y/R/B/O NT_006204AC093895905682053      
S/G/Y/R/B/O NT_006204AC108495906615343      
S/G/Y/R/B/O NT_006204AC093768907856853WI-8585432.005AC006226, AC026573, AC091046, AL139392, AC006226, AC026573, AC091046, AC093768, AL139392, J04988
S/G/Y/R/B/O NT_006204AC087106908761141UTR-96694357.001 AC087106, D14813, U20758
S/G/Y/R/B/O NT_006204AC084732909122293WI-65594358.001AC087106, AC084732, AC087106
S/G/Y/R/B/O NT_006204AC097484910721103      
S/G/Y/R/B/O NT_006204AC107067912181433D4S29294363.001 AC107067
S/G/Y/R/B/O NT_006204AC083829912682343      
S/G/Y/R/B/O NT_006204AC098582914999743AFMB337WH94360.001AC023521, AC023521
S/G/Y/R/B/O NT_006204AP001966915887503WI-69024361.001AC019279, AC108065, AC019279, AC093161, AC108065, AP001966
S/G/Y/R/B/O NT_006204AP001966916002373WI-79494362.001AC019279, AC108065, AC019279, AC108065, AP001966
S/G/Y/R/B/O NT_006204AC108065916321691      
S/G/Y/R/B/O NT_006204AC021183916655543      
S/G/Y/R/B/O NT_006204AC079141918057863D4S24604359.001 AC079141
S/G/Y/R/B/O NT_006204AC079141919143063WI-11134356.001AC055833, AC104785, AC055833, AC079141, AC104785
S/G/Y/R/B/O NT_006204AC104785919536641      
S/G/Y/R/B/O NT_006204AC019279920031721      
S/G/Y/R/B/O NT_006204AC023521920063231      
S/G/Y/R/B/O NT_006204AC055833920126291      
S/G/Y/R/B/O NT_006204AC105388921186293CHLC.GATA31H044364.001 AC105388, AP001940, AP002082
S/G/Y/R/B/O NT_006204AC093862922184453D4S24614365.001 AC093862, AP001940
S/G/Y/R/B/O NT_006204AC093866923662413      
S/G/Y/R/B/O NT_006204AC097478926325593WI-78904366.001 AC011954, AC097478, AF163864, AP001947
S/G/Y/R/B/O NT_006204AC108208926914893      
S/G/Y/R/B/O NT_006204AC093759927084113      
S/G/Y/R/B/O NT_006204AC105445928842183      
S/G/Y/R/B/O NT_006204AC108038930144893D4S15444367.001AP002083, AC108038, AP002083
S/G/Y/R/B/O NT_006204AC093781932377043WI-56394368.001 AC093781, AP001941
S/G/Y/R/B/O NT_006204AC098593933040373      
S/G/Y/R/B/O NT_006204AC097524934109743      
S/G/Y/R/B/O NT_006204AC093729936226643WI-54184369.001 AC093729, AP001948
S/G/Y/R/B/O NT_006204AC019188936692033      
S/G/Y/R/B/O NT_006204AC093793938750383      
S/G/Y/R/B/O NT_006204AC004054939764303      
S/G/Y/R/B/O NT_006204AC096897940866153      


  NT_006204 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006204AC114787941643791D4S30064370.001AC074124, AC074124, AC114787, AP001942
S/G/Y/R/B/O NT_006204AC074124942419673      
S/G/Y/R/B/O NT_006204AC110796942976951      
S/G/Y/R/B/O NT_006204AC079301944243473D4S4144371.001 AC079301, AP001949
S/G/Y/R/B/O NT_006204AC110774944520953      
S/G/Y/R/B/O NT_006204AC107049945711111      
S/G/Y/R/B/O NT_006204AC093810946855583WI-80534372.001AC107049, AC087607, AC093810, AC107049, AP001943
S/G/Y/R/B/O NT_006204AC093847948304853      
S/G/Y/R/B/O NT_006204AC093597950034113      
S/G/Y/R/B/O NT_006204AC097520951511233WI-52074374.001 AC097520
S/G/Y/R/B/O NT_006204AC112695952197513D4S30374373.001 AC112695
S/G/Y/R/B/O NT_006204AC115537952979613      
S/G/Y/R/B/O NT_006204AC093596954854491CHLC.GATA21G024375.002AC092744, AC018575, AC092744, AC093596, AP001944
S/G/Y/R/B/O NT_006204AC022317955030223CHLC.GAAT1F094376.001 AP001944
S/G/Y/R/B/O NT_006204AC022317956286973WI-100214377.001 AC022317
S/G/Y/R/B/O NT_006204AC095059956716593      
S/G/Y/R/B/O NT_006204AC108158957792453      
S/G/Y/R/B/O NT_006204AC020699957875473      
S/G/Y/R/B/O NT_006204AC096769959725083      
S/G/Y/R/B/O NT_006204AC115111960413143      
S/G/Y/R/B/O NT_006204AC011660961405441      
S/G/Y/R/B/O NT_006204AC110800961732623      
S/G/Y/R/B/O NT_006204AC105452963639523WI-55804378.001 AC105452, AP002084
S/G/Y/R/B/O NT_006204AC105315964157183      
S/G/Y/R/B/O NT_006204AC093733964315343      
S/G/Y/R/B/O NT_006204AC104077966912063AFMA054WG14379.001 AC104077, AP001864
S/G/Y/R/B/O NT_006204AC087413967251513      
S/G/Y/R/B/O NT_006204AC104647968038523      
S/G/Y/R/B/O NT_006204AC098677969497363D4S15574380.001AC022249, AC022249, AC098677
S/G/Y/R/B/O NT_006204AC096746970657143      
S/G/Y/R/B/O NT_006204AC034182972227581      
S/G/Y/R/B/O NT_006204AC022249972300861      
S/G/Y/R/B/O NT_006204AC007715972435131      
S/G/Y/R/B/O NT_006204AC037468972493261      
S/G/Y/R/B/O NT_006204AP002083972549711      
S/G/Y/R/B/O NT_006204 - WI-63364351.001AC012208, AC016295, AC104059, AC012208, AC016295, AC104059, AP001967
S/G/Y/R/B/O NT_006204 - WI-79134352.001AC012208, AC016295, AC104059, AC012208, AC016295, AC104059, AP001967
S/G/Y/R/B/O NT_006204 - WI-11654353.001AC097108, AC018983, AC097108
S/G/Y/R/B/O NT_006204 - WI-9374354.001AC097108, AC018983, AC097108
S/G/Y/R/B/O NT_006204 - D4S15344355.001AC019036, AC090499, AC019036, AC090499