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  Chromosome 4 - YAC Map - Single Contig
 

Chromosome 4 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006397
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006397AC1100891024500981      
S/G/Y/R/B/O NT_006397AC0974601025022803      
S/G/Y/R/B/O NT_006397AP0019621026591763      
S/G/Y/R/B/O NT_006397AC1080611027712003      
S/G/Y/R/B/O NT_006397AC0844211027928073      
S/G/Y/R/B/O NT_006397AC0839021028847813      
S/G/Y/R/B/O NT_006397AP0019601030348293      
S/G/Y/R/B/O NT_006397AC0975301031677223      
S/G/Y/R/B/O NT_006397AP0020261032875903      
S/G/Y/R/B/O NT_006397AC0191311034955273WI-79804397.001 AC019131, AP002028
S/G/Y/R/B/O NT_006397AC0938361036862233WI-101724396.001 AC093836
S/G/Y/R/B/O NT_006397AC0739751038229373D4S29864398.001AC114811, AC114811
S/G/Y/R/B/O NT_006397AC1148111038904691      
S/G/Y/R/B/O NT_006397AC0936341038910361      
S/G/Y/R/B/O NT_006397AP0018671039113943      
S/G/Y/R/B/O NT_006397AC0040611039714483      
S/G/Y/R/B/O NT_006397AC0926091041102493CHLC.GGAA18A064382.001 AC083952, AC092609, AP001950
S/G/Y/R/B/O NT_006397AC1053951042085963      
S/G/Y/R/B/O NT_006397AP0019691043688771      
S/G/Y/R/B/O NT_006397AC1147471043718241      
S/G/Y/R/B/O NT_006397AC0225701043723191      
S/G/Y/R/B/O NT_006397AC0976561043990011      
S/G/Y/R/B/O NT_006397AC0231771045073771      
S/G/Y/R/B/O NT_006397AC0235531045167861      
S/G/Y/R/B/O NT_006397AC0938321046906413      
S/G/Y/R/B/O NT_006397AC0938281048778733      
S/G/Y/R/B/O NT_006397AC0950541050219453      
S/G/Y/R/B/O NT_006397AC0937211051634843D4S15594384.001 AC018969, AC093721
S/G/Y/R/B/O NT_006397AC0966611052440703D4S15784385.001 AC018969, AC096661, AP001945
S/G/Y/R/B/O NT_006397AC0937761054130553CHLC.GATA53B074386.001 AC016078, AC093776, AP002742
S/G/Y/R/B/O NT_006397AC0937761054130833CHLC.GATA25A014383.001 AC016078, AC093776, AP002742
S/G/Y/R/B/O NT_006397AC1084641054783553      
S/G/Y/R/B/O NT_006397AC1048161055097533      
S/G/Y/R/B/O NT_006397AC1136131056881271WI-32734387.001AC107389, AC107389, AC113613
S/G/Y/R/B/O NT_006397AC1073891057471081      
S/G/Y/R/B/O NT_006397AC0796161057821853D4S15604389.001AC107389, AC113613, AC079616, AC107389, AC113613
S/G/Y/R/B/O NT_006397AC0796161058435723WI-40564388.001 AC079616, AP002821
S/G/Y/R/B/O NT_006397AC0965851059256033      
S/G/Y/R/B/O NT_006397AC0045441059652363      
S/G/Y/R/B/O NT_006397AC0799251061318803      
S/G/Y/R/B/O NT_006397AC1085151062145451      
S/G/Y/R/B/O NT_006397AC0218781064519433CHLC.GATA6D11.4074391.001 AC021878
S/G/Y/R/B/O NT_006397AC1082171064622313      
S/G/Y/R/B/O NT_006397AC0341541065714323      
S/G/Y/R/B/O NT_006397AP0023331067799951      
S/G/Y/R/B/O NT_006397AC0206521067931531      
S/G/Y/R/B/O NT_006397AC0924341068398531CHLC.GATA42E0345.002AC108139, AC092434, AC108139
S/G/Y/R/B/O NT_006397AC0924341068693731D4S292544.002AC007332, AC092437, AC007332, AC092434, AC092437
S/G/Y/R/B/O NT_006397AC1147341068357641      
S/G/Y/R/B/O NT_006397AC0741201068948393      


  NT_006397 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006397AC1081591070377391CHLC.GATA2F11.9284395.001AC074120, AC092434, AC074120, AC092434, AC108159
S/G/Y/R/B/O NT_006397AC0096171071290401      
S/G/Y/R/B/O NT_006397AC0588231071466733WI-68694394.001AC108159, AC058823, AC108159
S/G/Y/R/B/O NT_006397AC0588231072394753WI-24094393.001 AC058823, AP001861
S/G/Y/R/B/O NT_006397AC0789611072824693      
S/G/Y/R/B/O NT_006397AC0190771073161513      
S/G/Y/R/B/O NT_006397AC0738551075668253WI-18704392.001 AC009826, AC073855, AP001866
S/G/Y/R/B/O NT_006397AC0188841076956123      
S/G/Y/R/B/O NT_006397AC0936281078831833WI-62444417.002AC107420, AC107420, AP001953, AC093628, AC107420, AC107420, AP001953
S/G/Y/R/B/O NT_006397AC0936281080063553D4S4114418.001AC004063, AC004063, AC093628, AP001862
S/G/Y/R/B/O NT_006397AC0040631080220033      
S/G/Y/R/B/O NT_006397AC0939181081033633      
S/G/Y/R/B/O NT_006397AC0040531081267653CHLC.ATA14A044419.001 AC004053, AP001954
S/G/Y/R/B/O NT_006397AC0040531082111993D4S15704420.001AC105918, AC004053, AC084769, AC105918, AP001955
S/G/Y/R/B/O NT_006397AC1059181082721481      
S/G/Y/R/B/O NT_006397AC0965771083219883      
S/G/Y/R/B/O NT_006397AC0040691085618833AFM199YB24422.001 AC004069
S/G/Y/R/B/O NT_006397AC0260291086117343      
S/G/Y/R/B/O NT_006397AC1068881088396563D4S30264421.001 AP001956
S/G/Y/R/B/O NT_006397AC0040661088713283      
S/G/Y/R/B/O NT_006397AC1053911090024383      
S/G/Y/R/B/O NT_006397AC0082431091439363      
S/G/Y/R/B/O NT_006397AC0937821093034573      
S/G/Y/R/B/O NT_006397AC1093611093853913WI-80084424.001AP001820, AC109361, AP001820
S/G/Y/R/B/O NT_006397AP0018201094701483      
S/G/Y/R/B/O NT_006397AP0019571094875571      
S/G/Y/R/B/O NT_006397AC1073811095534903      
S/G/Y/R/B/O NT_006397AC0207491095918271      
S/G/Y/R/B/O NT_006397AC0871081096756571      
S/G/Y/R/B/O NT_006397AC0936801097740661      
S/G/Y/R/B/O NT_006397AC0732291098464041      
S/G/Y/R/B/O NT_006397AC0924581098504723      
S/G/Y/R/B/O NT_006397AC1054001099690233      
S/G/Y/R/B/O NT_006397AC0924451100855563WI-33234426.001 AC016029, AC092445
S/G/Y/R/B/O NT_006397AC1048291102313103      
S/G/Y/R/B/O NT_006397AC0040581103194713WI-12574425.001 AC004058, AC068842, AP001821, AP001863
S/G/Y/R/B/O NT_006397AC0030991103788653CHLC.GATA65D064427.001 AC003099, AP001821
S/G/Y/R/B/O NT_006397AP0018191104588333AFMA081WB14423.001 AC004048, AC079110, AC106863, AP001819
S/G/Y/R/B/O NT_006397AC1046631106793833WI-24454428.001 AC026921, AC104663, AP001958
S/G/Y/R/B/O NT_006397AC0031001107239733      
S/G/Y/R/B/O NT_006397AC0040551108692453D4S15644429.001 AC004055
S/G/Y/R/B/O NT_006397AC0985861110278011NIB14784430.001AC060815, AC084840, AC060815, AC084810, AC084840, AC098586, U53447
S/G/Y/R/B/O NT_006397AC0608151110473751      
S/G/Y/R/B/O NT_006397AC0848401110524331      
S/G/Y/R/B/O NT_006397AC1068611110677493      
S/G/Y/R/B/O NT_006397AC0040451111528803WI-40634431.001 AC004045, AC084810
S/G/Y/R/B/O NT_006397AC1081701111879113AFMB280XA54432.001 AC108170
S/G/Y/R/B/O NT_006397AC0965641112018063      
S/G/Y/R/B/O NT_006397AC1147331113631231      
S/G/Y/R/B/O NT_006397AC0000161113800831      


  NT_006397 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006397AF0957031114481483WI-65334433.001AC021524, AC021524
S/G/Y/R/B/O NT_006397AC0040591114495943      
S/G/Y/R/B/O NT_006397AP0020771114903271      
S/G/Y/R/B/O NT_006397AC0215241115031911      
S/G/Y/R/B/O NT_006397AC0925391115401521      
S/G/Y/R/B/O NT_006397AC0970671115566043      
S/G/Y/R/B/O NT_006397AC0055101118132043WI-31214434.001 AC005510, AC018945
S/G/Y/R/B/O NT_006397AC0936461118595723      
S/G/Y/R/B/O NT_006397AC0842091120353783RP_L34_14435.001 AB061832, AC084209
S/G/Y/R/B/O NT_006397AC1070711120420333      
S/G/Y/R/B/O NT_006397AC0974731121508273      
S/G/Y/R/B/O NT_006397AC0734271123003053      
S/G/Y/R/B/O NT_006397AC0950661124554533      
S/G/Y/R/B/O NT_006397AC0047011126003573D4S15714436.001 AC079099
S/G/Y/R/B/O NT_006397AC0040511126930263