Chromosome 4 - YAC Map - Single Contig

Chromosome 4 - YAC Map - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_026996	NT_006111	NT_022865	NT_006081	NT_033075	NT_029956	NT_006051	NT_033060
NT_033064	NT_006362	NT_006307	NT_006342	NT_029958	NT_016407	NT_033056	NT_030649
NT_006344	NT_023072	NT_033076	NT_006350	NT_006285	NT_006316	NT_023052	NT_006189
NT_022794	NT_006305	NT_022751	NT_022995	NT_033067	NT_006098	NT_029274	NT_033069
NT_016297	NT_022782	NT_033059	NT_006238	NT_022831	NT_022853	NT_022850	NT_022778
NT_022852	NT_033063	NT_022813	NT_022836	NT_022862	NT_006303	NT_030640	NT_033073
NT_006281	NT_006216	NT_033072	NT_022760	NT_006109	NT_006328	NT_022844	NT_030642
NT_006114	NT_030659	NT_006204	NT_033074	NT_023068	NT_006201	NT_006383	NT_006397
NT_033061	NT_033068	NT_006365	NT_028147	NT_028173	NT_006371	NT_025694	NT_031780
NT_016599	NT_031781	NT_016354	NT_033055	NT_033062	NT_033065	NT_006167	NT_006302
NT_022755	NT_022753	NT_022803	NT_022846	NT_022856	NT_022805	NT_022819	NT_022845
NT_006124	NT_022811	NT_006127	NT_006258	NT_016606	NT_029950	NT_028160	NT_029954
NT_022851	NT_022832	NT_015169	NT_006129	NT_022740	NT_029955	NT_022801	NT_022824
NT_006171	NT_022776	NT_022768	NT_006198	NT_006257	NT_022775	NT_006118	NT_022792
NT_006256	NT_006169	NT_022841	NT_033070	NT_022800	NT_033066	NT_033071	NT_028146
NT_029961	NT_025688

NT_006316

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006316	AC021248	26366733	1	WI-6539	4	106.00	1	AC058821,	AC021248, AC058821, AC105145, AC110812
S/G/Y/R/B/O	NT_006316	AC058821	20473816	1
S/G/Y/R/B/O	NT_006316	AC020706	20477256	1
S/G/Y/R/B/O	NT_006316	AC105290	26506465	1	D4S3044	4	108.00	1		AC105290
S/G/Y/R/B/O	NT_006316	AC105290	26541191	1	D4S3022	4	107.00	1	AC092436,	AC006393, AC092436, AC105290
S/G/Y/R/B/O	NT_006316	AC018967	20530817	1
S/G/Y/R/B/O	NT_006316	AC114736	20637773	1
S/G/Y/R/B/O	NT_006316	AC097457	20662999	3
S/G/Y/R/B/O	NT_006316	AC024595	20783835	1
S/G/Y/R/B/O	NT_006316	AC109362	20949611	3	D4S306	4	68.00	1		AC109362
S/G/Y/R/B/O	NT_006316	AC109362	20949622	3	D4S292	4	67.00	1		AC109362
S/G/Y/R/B/O	NT_006316	AC103562	20976290	3	D4S1267	4	66.00	1	AC093658,	AC093658, AC103562
S/G/Y/R/B/O	NT_006316	AC103562	21029341	3	D4S903	4	65.00	1		AC103562
S/G/Y/R/B/O	NT_006316	AC024230	21118968	3
S/G/Y/R/B/O	NT_006316	AC110767	21277237	3
S/G/Y/R/B/O	NT_006316	AC114728	21315829	1
S/G/Y/R/B/O	NT_006316	AC093658	21375998	1
S/G/Y/R/B/O	NT_006316	AC093898	21400951	3	WI-1924	4	57.00	1		AC007118, AC093898
S/G/Y/R/B/O	NT_006316	AC093898	21500145	3	WI-10819	4	56.00	1		AC007118, AC093898
S/G/Y/R/B/O	NT_006316	AC093898	21525371	3	D4S344	4	59.00	1	AC112245,	AC093898, AC112245
S/G/Y/R/B/O	NT_006316	AC093898	21540009	3	D4S285	4	63.00	1	AC112245,	AC007118, AC093898, AC112245
S/G/Y/R/B/O	NT_006316	AC093898	21547785	3	CHLC.GATA90B10	4	61.00	1	AC112245,	AC093898, AC112245
S/G/Y/R/B/O	NT_006316	AC093898	21547789	3	CHLC.GATA81G05	4	60.00	1	AC112245,	AC093898, AC112245
S/G/Y/R/B/O	NT_006316	AC093898	21551385	3	D4S419	4	58.00	1	AC112245,	AC093898, AC112245
S/G/Y/R/B/O	NT_006316	AC110074	21599361	3	WI-3049	4	62.00	1	AC112245,	AC110074, AC112245
S/G/Y/R/B/O	NT_006316	AC112245	21612401	1
S/G/Y/R/B/O	NT_006316	AC006840	21790068	3	D4S1608	4	64.00	1	AC114736,	AC006840, AC114736
S/G/Y/R/B/O	NT_006316	AC079755	21832732	3
S/G/Y/R/B/O	NT_006316	AC098862	22017203	3
S/G/Y/R/B/O	NT_006316	AC096718	22301925	3	D4S279	4	69.00	1	AC108011,	AC096718, AC108011, AL136447
S/G/Y/R/B/O	NT_006316	AC108011	22304525	1	D4S1063	4	71.00	1		AC108011, AL136447
S/G/Y/R/B/O	NT_006316	AC108011	22317103	1	WI-4000	4	70.00	1		AC108011
S/G/Y/R/B/O	NT_006316	AC092577	22380812	3
S/G/Y/R/B/O	NT_006316	AC021118	22454740	3
S/G/Y/R/B/O	NT_006316	AC104065	22647354	3
S/G/Y/R/B/O	NT_006316	AC097505	22747954	3	D4S1546	4	73.00	1		AC007762
S/G/Y/R/B/O	NT_006316	AC097505	22896523	3	D4S456	4	72.00	1		AC097505
S/G/Y/R/B/O	NT_006316	AC109636	22904524	3
S/G/Y/R/B/O	NT_006316	AC108161	22974339	1
S/G/Y/R/B/O	NT_006316	AC093735	23166274	3
S/G/Y/R/B/O	NT_006316	AC093814	23277663	3
S/G/Y/R/B/O	NT_006316	AC098583	23438864	3
S/G/Y/R/B/O	NT_006316	AC093917	23751789	3	D4S336	4	83.00	1	AC016782,	AC016782, AC093917
S/G/Y/R/B/O	NT_006316	AC016782	23769932	1
S/G/Y/R/B/O	NT_006316	AC093626	23822777	1
S/G/Y/R/B/O	NT_006316	AC097512	23935804	3	WI-2961	10	41.00	1		AC097512
S/G/Y/R/B/O	NT_006316	AC097512	24008941	3	D4S2933	4	85.00	1		AC097512
S/G/Y/R/B/O	NT_006316	AC114912	24040353	1
S/G/Y/R/B/O	NT_006316	AC092440	24194514	3	D4S972	4	86.00	1	AC114912,	AC006295, AC092440, AC114912
S/G/Y/R/B/O	NT_006316	AC092440	24260393	3	D4S1265	4	87.00	1		AC006295, AC092440

NT_006316 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006316	AC092440	24282221	3	D4S326	4	88.00	1		AC006295, AC092440
S/G/Y/R/B/O	NT_006316	AC098676	24296606	3
S/G/Y/R/B/O	NT_006316	AC006052	24316532	3
S/G/Y/R/B/O	NT_006316	AC093607	24495198	3	D4S616	4	91.00	1		AC044905, AC093607
S/G/Y/R/B/O	NT_006316	AC093607	24581205	3	WI-5645	4	89.00	1		AC044905, AC093607
S/G/Y/R/B/O	NT_006316	AC093607	24602906	3	D4S425	4	90.00	1		AC093607
S/G/Y/R/B/O	NT_006316	AC097508	24622618	3
S/G/Y/R/B/O	NT_006316	AC092834	24844244	3	D4S3013	4	92.00	1		AC092834
S/G/Y/R/B/O	NT_006316	AC108071	24872849	3
S/G/Y/R/B/O	NT_006316	AC006229	25040234	3	AFMA071ZE9	4	93.00	1		AC006229
S/G/Y/R/B/O	NT_006316	AC108076	25181984	3	D4S404	4	94.00	1		AC108076
S/G/Y/R/B/O	NT_006316	AC092846	25218687	3	D4S1590	4	95.00	1		AC005769, AC027482, AC092846
S/G/Y/R/B/O	NT_006316	AC092846	25360487	3	D4S860	4	97.00	1	AC108028,	AC005769, AC027482, AC092846, AC108028
S/G/Y/R/B/O	NT_006316	AC108028	25520506	1	WI-3401	4	98.00	1	AC115110,	AC108028, AC115110
S/G/Y/R/B/O	NT_006316	AC115110	25402274	1
S/G/Y/R/B/O	NT_006316	AC114777	25587395	1
S/G/Y/R/B/O	NT_006316	AC006390	25691835	3	D4S1009	4	100.00	1	AC114777,	AC006390, AC114777
S/G/Y/R/B/O	NT_006316	AC006390	25697217	3	D4S1551	4	96.00	1	AC114777,	AC006390, AC114777
S/G/Y/R/B/O	NT_006316	AC006390	25728672	3	D4S1024	4	99.00	1	AC073829, AC114777,	AC006390, AC073829, AC114777
S/G/Y/R/B/O	NT_006316	AC006390	25786691	3	D4S2911	4	101.00	1		AC006390
S/G/Y/R/B/O	NT_006316	AC073829	25824020	1	D4S3052	4	102.00	1		AC073829, AC116422
S/G/Y/R/B/O	NT_006316	AC113614	25879580	1
S/G/Y/R/B/O	NT_006316	AC007073	25955815	3	D4S2948	4	103.00	1	AC113614,	AC007073, AC113614
S/G/Y/R/B/O	NT_006316	AC007073	26035026	3	D4S517	4	104.00	1	AC104662,	AC007073, AC104662
S/G/Y/R/B/O	NT_006316	AC104662	26078104	1
S/G/Y/R/B/O	NT_006316	AC108218	26255831	3	D4S2970	4	105.00	2	AC058821,	AC044900, AC058821, AC105145, AC108218, AC110812
S/G/Y/R/B/O	NT_006316	AC092436	26592935	3
S/G/Y/R/B/O	NT_006316	AC093660	26727481	1
S/G/Y/R/B/O	NT_006316	AC006839	26728535	1
S/G/Y/R/B/O	NT_006316	AC097714	26874707	3
S/G/Y/R/B/O	NT_006316	AC111003	27271224	1	D4S863	4	109.00	1	AC110779,	AC110779, AC111003
S/G/Y/R/B/O	NT_006316	AC110779	27084065	1
S/G/Y/R/B/O	NT_006316	AC097109	27104088	1	AFMB355YA5	4	110.00	1	AC111003,	AC097109, AC111003
S/G/Y/R/B/O	NT_006316	AC084735	27194309	1
S/G/Y/R/B/O	NT_006316	AC093637	27381542	3	WI-7822	4	112.00	1	AC084735,	AC006391, AC084735, AC092446, AC093637, D85606
S/G/Y/R/B/O	NT_006316	AC093807	27423553	3	AFMA283YH5	4	111.00	1		AC006391
S/G/Y/R/B/O	NT_006316	AC107390	27570604	3
S/G/Y/R/B/O	NT_006316	AC106047	27683302	3
S/G/Y/R/B/O	NT_006316	AC006928	27902220	3	WI-4086	4	113.00	1		AC006928
S/G/Y/R/B/O	NT_006316	AC111195	28024692	1
S/G/Y/R/B/O	NT_006316	AC024132	28036229	3
S/G/Y/R/B/O	NT_006316	AC006568	28372315	3	D4S1609	4	116.00	1		AC006568
S/G/Y/R/B/O	NT_006316	AC093845	28374486	3
S/G/Y/R/B/O	NT_006316	AC097380	28510951	3	D4S391	4	114.00	1		AC020628, AC097380
S/G/Y/R/B/O	NT_006316	AC093854	28586951	3	D4S313	4	115.00	1		AC093854
S/G/Y/R/B/O	NT_006316	AC093753	28705526	3
S/G/Y/R/B/O	NT_006316	AC007106	28809909	3
S/G/Y/R/B/O	NT_006316	AC098863	28980098	3
S/G/Y/R/B/O	NT_006316	AC108012	29067359	1
S/G/Y/R/B/O	NT_006316	AC093791	29243648	3	WI-10874	4	118.00	1		AC093791

NT_006316 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	YAC Chr	WI YAC	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_006316	AC093791	29251968	3	D4S577	4	117.00	1		AC093791
S/G/Y/R/B/O	NT_006316	AC109588	29278741	3
S/G/Y/R/B/O	NT_006316	AC097480	29336182	3
S/G/Y/R/B/O	NT_006316	AC091602	29609492	3	D4S338	4	119.00	1		AC091602
S/G/Y/R/B/O	NT_006316	AC096566	29638841	3
S/G/Y/R/B/O	NT_006316	AC111004	29738772	3
S/G/Y/R/B/O	NT_006316		-		CHLC.GATA13C05	4	74.00	1	AC073450, AC098597, AC109360,	AC011633, AC073450, AC098597, AC109360
S/G/Y/R/B/O	NT_006316		-		D4S3020	4	75.00	1	AC009568, AC110296,	AC009568, AC110296
S/G/Y/R/B/O	NT_006316		-		D4S1593	4	76.00	1	AC009568, AC110296,	AC009568, AC110296
S/G/Y/R/B/O	NT_006316		-		D4S1562	4	77.00	1	AC009568, AC110296,	AC009568, AC110296
S/G/Y/R/B/O	NT_006316		-		D4S2905	4	78.00	1	AC009568, AC110296,	AC009568, AC110296
S/G/Y/R/B/O	NT_006316		-		D4S2994	4	79.00	1	AC110612,	AC021536, AC110612
S/G/Y/R/B/O	NT_006316		-		D4S3017	4	80.00	1	AC110612,	AC021536, AC110612
S/G/Y/R/B/O	NT_006316		-		WI-1041	4	81.00	1	AC096576,	AC096576
S/G/Y/R/B/O	NT_006316		-		WI-6508	4	82.00	1	AC110612,	AC021536, AC110612
S/G/Y/R/B/O	NT_006316		-		WI-2960	4	84.00	1	AL160391,	AC013772, AC013803, AF252279, AL160391